cluster # 6191

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Anopheles gambiae
cluster # 6191 cluster # 6191 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6191#0 length = 876 sequences # 4

consensus_6191#1 length = 572 sequences # 1

consensusID : consensus_6191#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 876
fasta sequence

                              [TTTTTTTTTTTTGTGGTGTGGGGATTTGGTTTTTATGTTTATTATTAATCAAAACAGTGCCTAAATGTGTCTCTAAAAG-GGGCTCTAAAATAAAAAAG-TCTTTCTAACACTAATA-GGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCTGTTCCTTTTAAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCAATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTGCCGTTCTCCGTTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCTTTCATTTCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGTGTGGCGGGGTCTTCTCACGTGGAGCGTGGCGGCGCATCTACCATCACCTGTAGCGCCTGATTACGCTGGCAACGATCTCGGCAGCCAGAAACGCTGTATAAATGCCACCAAGCACCAGGAAGTAGGAGCTGAATACCGTAAACTGACCGAA-AAGTCCAGCGCAAACCAGCCGTCCGAATCGGTGACCGAGAACGTGAGCAGCGTTTGCAGCGACAGTGCGACGAGCGTATTGAAGCCGAACACCAGCCCAAAGCAATCGTCCGAAATGTTTTTTGCAATTTCCGCACTCACCACGGTAATCGCGAACGCGTACAGCACGCAGAAAATCATGTACCCGAGATAGGACACGATCAAGTTGCCGGTGTTGGTTGCTAGCATCATTGCGCCGCCCGCTGCAAACGAAAGCAGCGCCACAATTAGTAGGCTGGTGCGCGGTTTTTAGAAAACCGCTGTGCAAGTAACCGGCCAGCAGGGAGACGATGGCTCCGAGCAGTGTAAC]

[+] EMBL CNS08OP3             [TTTTTTTTTTTTGTGGTGTGGGGATTTGGTTTTTATGTTTATTATTAATCAAAACAGTGCCTAAATGTGTCTCTAAAAG GGGCTCTAAAATAAAAAAG TCTTTCTAACACTAATA GGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCTGTTCCTTTTAAACCAACAAGTGTGTGTACGGTCAATGTACTGCGATACAAGAGCACTTCAATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTGCCGTTCTCCGTTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCTTTCATTTCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGTGTGGCGGGGTCTTCTCACGTGGAGCGTGGCGGCGCATCTACCATCACCTGTAGCGCCTGATTACGCTGGCAACGATCTCGGCAGCCAGAAACGCTGTATAAATGCCACCAAGCACCAGGAAGTAGGAGCTGAATACCGTAAACTGACCGAA AAGTCCAGCGCAAACCAGCCGTCCGAATCGGTGACCGAGAACGTGAGCAGCGTTTGCAGCGACAGTGCGACGAGCGTATTGAAGCCGAACACCAGCCCAAAGCAATCGTCCGAAATGTTTTTTGCAATTTCCGCACTCACCACGGTA                                                                                                                                                                                                         ]
[+] EMBL CNS08HW7             [                   tGGGATTTGGTTTTTATGTTTATTATTAATCAAAACAGTGCCTAAATGTGTCTCTAAAAG GGGCTCTAAAAAAAAAAAG TCTTTCTAACACTAATA GGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCTGTTCCTTTTAAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCAATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTGCCGTTCTCCGTTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCTTTCATTTCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGTTTGGCGGGGTCTTCTCACGAAGAGCGTGGCGGCGCATCTACCATCACCTGTAGCGCCTGATTACGCTGGCAACGATCTCGGCAGCCAGAAACGCTGTATAAATGCCACCAAGCACCAGGAAGTAGGAGCTGAATACCGTAAACTGACCGAACACGTCCAGCGCAAACCAGCCGTCCGAATCGGTGACCGAGAACGTGAGCCGCGTTTGCAGCGACAGTGCGACGAGCGTATTGAAGCCGAACACCAGCCCAAAGCAATCGTCCGAAATGTTTTTGGCAATTTCCGCACTCACCACGGTAATCGCGAACGCGTACAGCACGCAGAAAATCATGTACCCGAGATAGGACACGATCAAGTTGCCGGTGTTGGTTGCTAGCATCATTGCGCCGCCCGCTGCAAACGAAAGCAGCGCCACAATTAGTAGGCTGGTGCGCGGTTTTTAGAAAACCGCTGTGCAAGTAACCGGCCAGCAGGGAGACGATGGCTCCGAGCAGTGTAAC]
[+] EMBL CNS08LPS             [                       ATTTGG TTTTATGTTTATTATTAATCAAAACAGTGCCTAAATGTGTCTCTAAAAGAGGGCTCTAAAATAAAAAAGCTCTTTCTAACACTAATAGGGACACATTACCTGGGCCATTATAAg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CNS0905M             [                                                                         TAAAAG GGGCTCTAAAATAAAAAAG TCTTTCTAACACTAATA GGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCTGTTCCTTTTAAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCAATCGATCATGCCGATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]




>consensus_6191#0
TTTTTTTTTTTTGTGGTGTGGGGATTTGGTTTTTATGTTTATTATTAATCAAAACAGTGC
CTAAATGTGTCTCTAAAAGGGGCTCTAAAATAAAAAAGTCTTTCTAACACTAATAGGACA
CATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCTGTTCCTTTTAAACCA
ACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCAATCGATCATGCCGAT
CGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTGCCGTTCTCCGTTACCG
ATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCTTTCATTTCAGCCTCGTCAGTG
TGTGTGTGTGTGTGTGTGTGGCGGGGTCTTCTCACGTGGAGCGTGGCGGCGCATCTACCA
TCACCTGTAGCGCCTGATTACGCTGGCAACGATCTCGGCAGCCAGAAACGCTGTATAAAT
GCCACCAAGCACCAGGAAGTAGGAGCTGAATACCGTAAACTGACCGAAAAGTCCAGCGCA
AACCAGCCGTCCGAATCGGTGACCGAGAACGTGAGCAGCGTTTGCAGCGACAGTGCGACG
AGCGTATTGAAGCCGAACACCAGCCCAAAGCAATCGTCCGAAATGTTTTTTGCAATTTCC
GCACTCACCACGGTAATCGCGAACGCGTACAGCACGCAGAAAATCATGTACCCGAGATAG
GACACGATCAAGTTGCCGGTGTTGGTTGCTAGCATCATTGCGCCGCCCGCTGCAAACGAA
AGCAGCGCCACAATTAGTAGGCTGGTGCGCGGTTTTTAGAAAACCGCTGTGCAAGTAACC
GGCCAGCAGGGAGACGATGGCTCCGAGCAGTGTAAC

consensusID : consensus_6191#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [CCGCCCACGCGTCCGTTTTTTTTTTGTGCTGTTGGGATTTGGTTTTTATGTTTATTATTAATCAAAACAGTGACTAAATGTGTCTCTAAAAGGGGCTCTAAAATAAAAAAAAGTCTTTCTAACACTAATAGGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCTGTTCCTTTTCAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCAATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTCCCGTTCTCCGGTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCGTTCATTTCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGTGGCGGGGTCTTCTCACGTGGAGCGTGGCGGCTCATCTACCATCACCTGTAGCGCCTGATTACGTTGGCTGGCGTTTTGTGGAGCATGGACGAATACGGAGGTAGTGTGTGTGCGTGTGTGTGTGGCCACTCGAAGAAAGAAGCCAAGTAACATGAACGATAATACAAATAGTAAGTAAAG]

[+] EMBL BM622352             [CCGCCCACGCGTCCGTTTTTTTTTTGTGCTGTTGGGATTTGGTTTTTATGTTTATTATTAATCAAAACAGTGACTAAATGTGTCTCTAAAAGGGGCTCTAAAATAAAAAAAAGTCTTTCTAACACTAATAGGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCTGTTCCTTTTCAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCAATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTCCCGTTCTCCGGTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCGTTCATTTCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGTGGCGGGGTCTTCTCACGTGGAGCGTGGCGGCTCATCTACCATCACCTGTAGCGCCTGATTACGTTGGCTGGCGTTTTGTGGAGCATGGACGAATACGGAGGTAGTGTGTGTGCGTGTGTGTGTGGCCACTCGAAGAAAGAAGCCAAGTAACATGAACGATAATACAAATAGTAAGTAAAG]




>consensus_6191#1
CCGCCCACGCGTCCGTTTTTTTTTTGTGCTGTTGGGATTTGGTTTTTATGTTTATTATTA
ATCAAAACAGTGACTAAATGTGTCTCTAAAAGGGGCTCTAAAATAAAAAAAAGTCTTTCT
AACACTAATAGGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCT
GTTCCTTTTCAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCA
ATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTCC
CGTTCTCCGGTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCGTTCATT
TCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGTGGCGGGGTCTTCTCACGTGGAGCGTGGC
GGCTCATCTACCATCACCTGTAGCGCCTGATTACGTTGGCTGGCGTTTTGTGGAGCATGG
ACGAATACGGAGGTAGTGTGTGTGCGTGTGTGTGTGGCCACTCGAAGAAAGAAGCCAAGT
AACATGAACGATAATACAAATAGTAAGTAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6191#0      -------------TTTTTTTTTTTTGTGGTGTGGGGATTTGGTTTTTATGTTTATTATTA 47
consensus_6191#1      CCGCCCACGCGTCCGTTTTTTTTTTGTGCTGTTGGGATTTGGTTTTTATGTTTATTATTA 60
                                     ************* *** ***************************

consensus_6191#0      ATCAAAACAGTGCCTAAATGTGTCTCTAAAAGGGGCTCTAAAATAAAAAA--GTCTTTCT 105
consensus_6191#1      ATCAAAACAGTGACTAAATGTGTCTCTAAAAGGGGCTCTAAAATAAAAAAAAGTCTTTCT 120
                      ************ *************************************  ********

consensus_6191#0      AACACTAATAGGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCT 165
consensus_6191#1      AACACTAATAGGACACATTACCTTGCGCATTATAATGCTTCCTACAGTCAATCACTATCT 180
                      ************************************************************

consensus_6191#0      GTTCCTTTTAAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCA 225
consensus_6191#1      GTTCCTTTTCAACCAACAAGTGTGTATACGGTCAATGTACTGCGATACAAGAGCACTTCA 240
                      ********* **************************************************

consensus_6191#0      ATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTGC 285
consensus_6191#1      ATCGATCATGCCGATCGATAATATCTCTTCTACGTAAGTAATGTATTTGCTGGCTTGTCC 300
                      ********************************************************** *

consensus_6191#0      CGTTCTCCGTTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCTTTCATT 345
consensus_6191#1      CGTTCTCCGGTACCGATATAGCATCCCGAGAACTAATTTGTACTACCTGTTGCGTTCATT 360
                      ********* ******************************************* ******

consensus_6191#0      TCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGTGTGGCGGGGTCTTCTCACGTGGAGCGTG 405
consensus_6191#1      TCAGCCTCGTCAGTGTGTGTGTGTGTGTGTGT--GGCGGGGTCTTCTCACGTGGAGCGTG 418
                      ********************************  **************************

consensus_6191#0      GCGGCGCATCTACCATCACCTGTAGCGCCTGATTACGCTGGCAACGATCTCGGCAGCCAG 465
consensus_6191#1      GCGGCTCATCTACCATCACCTGTAGCGCCTGATTACGTTGGCTGGCGTTTTGTGGAGCAT 478
                      ***** ******************************* ****     * * *     ** 

consensus_6191#0      AAACGCTGTATAAATGCCACCAAGCACCAGGAAGTAGGAGCTGAATACCGTAAACTGACC 525
consensus_6191#1      GGACGA-ATACGGAGGT-AGTGTGTGTGCGTGTGTGTGTGGCCACTCGAAGAAAGAAGCC 536
                        ***   **   * *  *    *     *   **  * *   * *     ***    **

consensus_6191#0      GAAAAGTCCAGCGCAAACCAGCCGTCCGAATCGGTGACCGAGAACGTGAGCAGCGTTTGC 585
consensus_6191#1      AAG-----TAACATGAACGA-TAATACAAAT-AGTAAGTAAAG----------------- 572
                       *       * *   *** *    * * ***  ** *   *                   

consensus_6191#0      AGCGACAGTGCGACGAGCGTATTGAAGCCGAACACCAGCCCAAAGCAATCGTCCGAAATG 645
consensus_6191#1      ------------------------------------------------------------
                                                                                  

consensus_6191#0      TTTTTTGCAATTTCCGCACTCACCACGGTAATCGCGAACGCGTACAGCACGCAGAAAATC 705
consensus_6191#1      ------------------------------------------------------------
                                                                                  

consensus_6191#0      ATGTACCCGAGATAGGACACGATCAAGTTGCCGGTGTTGGTTGCTAGCATCATTGCGCCG 765
consensus_6191#1      ------------------------------------------------------------
                                                                                  

consensus_6191#0      CCCGCTGCAAACGAAAGCAGCGCCACAATTAGTAGGCTGGTGCGCGGTTTTTAGAAAACC 825
consensus_6191#1      ------------------------------------------------------------
                                                                                  

consensus_6191#0      GCTGTGCAAGTAACCGGCCAGCAGGGAGACGATGGCTCCGAGCAGTGTAAC 876
consensus_6191#1      ---------------------------------------------------