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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1149 fasta sequence
[AGGCAACTCTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTCCTTTTCAGGTACCATCATTCAATCGCTGATGGAATTGCAATATTTCGAACGTTCTGCAAAGAATTCCTCGACAGTACGGGCACGGCGGAGGAACACGTGTGGAATCCAAATGCGGCCAATCAGACCTCGGTGAAAGGTTTTTTCACTTGGCGCAATCTCTTCCGTATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTACTCAAACGGGAATGCAATCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGCAGGGCGACCAGCAAATCACGCGACTCCGGCGATAAGCGCAATCAAGACAGTCAAGCATTTGGTAAATGATTGCAGCTTTACAGACATCTTGCTGACGGCATTTGCCACGAGTCTTGGGGCGTACTGCAGGCGGAAGCGCTTACCCGTGCCAACGACCGTCACTATCGGGCAGATGCGACGGTTCCATCGCGAGTCTGAAGTAATACAGCTGCGTAATCGCTCAACGGCTGTATTTAAATCGTTGCCAATAGGCAGTCTGCCATGCGGATCGAGCACNATCGACCAGCTCATATGCCAGATAAATGCTGTAAAAGGTCCAGACGACGCATTTCAGGCCAGTACAGATGCTTTAATTACTCACCTGAGCGTGTCGTACCTTCCAGAGCTACTGCCGGCTGCAGTTGTACGGGCATTATTTGCTAGAAGCAAGTTTTCGATTGCTCTGTCCAACATTCCTGCCTTCGTCGGCACTGTCTCTCTGGAAAGGTACATTCTCCGAGAGGCCACATTCTGGGTACCCAACATTGAGCGCAATCTGTTCGGGTTGACCTTACTGACAACGGACGGCCGCCTACAGATAGGTTCAATCGCTGATAGGACAATAATTAAGGATGAAGAAGAACTCGAACAAATACTTAACGAAACATTGCAGGAGCTAAGCAATATGGCGTGCATGATAAAATGCAACTAAATATCTTTTACGTGAAACAGACCTTATGTAAGTGTGAACTGACTGGGATAA]
[+] EMBL BX623142 [AGGCAACTCTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTCCTTTTCAGGTACCATCATTCAATCGCTGATGGAATTGCAATATTTCGAACGTTCTGCAAAGAATTCCTCGACAGTACGGGCACGGCGGAGGAACACGTGTGGAATCCAAATGCGGCCAATCAGACCTCGGTGAAAGGTTTTTTCACTTGGCGCAATCTCTTCCGTATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTACTCAAACGGGAATGCAATCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGCAGGGCGACCAGCAAATCACGCGACTCCGGCGATAAGCGCAATCAAGACAGTCAAGCATTTGGTAAATGATTGCAGCTTTACAGACATCTTGCTGACGGCATTTGCCACGAGTCTTGGGGCGTACTGCAGGCGGAAGCGCTTACCCGTGCCAACGACCGTCACTATCGGGCAGATGCGACGGTTCCATCGCGAGTCTGAAGTAATACAGCTGCGTAATCGCTCAACGGCTGTATTTAAATCGTTGCCAATAGGCAGTCTGCCATGCGGATCGAGCACNATCGACCAGCTCATATGCCAGATAAA ]
[+] EMBL BX628119 [ ATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTCCTTTTCAGGTACCATCATTCAATCGCTGATGGAATTGCAATATTTCGAACGTTCTGCAAAGAATTCCTCGACAGTACGGCCACGGCGGAGGAACACGTGTGGAATCCAAATGCGGCCAATCAGACCTCGGTGAATGGTTTTTTCACTTGGCGCAATCTCTTCCGTATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTACTCAAACGGGAATGCAATCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGCAGGGCGACCAGCAAATCACGCGACTCCTGTGATAAGCGCAATCAAGACAGTCAAGCATTTGGTAAATGATTGCAGCTTTACAGACATCTTGCTGACGGCATTTGCCACGAGTCTTGGGGCGTACTGCAGGCGGAAGAGCTTACCCGTGCCAACGGCCGTCACTATCGGTCAGATGCGA ]
[+] EMBL BM638899 [ cCGCTCAACGGCTGTATTTAAAACGTTGCCAATAGGCAGTCTGCCATGCGGATCGAGCACAATCGACCAGCTCATATGCCAGATAAATGCTGTAAAAGGTCCAGACGACGCATTTCAGGCCAGTACAGATGCTTTAATTACTCACCTGAGCGTGTCGTACCTTCCAGAGCTACTGCCGGCTGCAGTTGTACGGGCATTATTTGCTAGAAGCAAGTTTTCGATTGCTCTGTCCAACATTCCTGCCTTCGTCGGCACTGTCTCTCTGGAAAGGTACATTCTCCGAGAGGCCACATTCTGGGTACCCAACATTGAGCGCAATCTGTTCGGGTTGACCTTACTGACAACGGACGGCCGCCTACAGATAGGTTCAATCGCTGATAGGACAATAATTAAGGATGAAGAAGAACTCGAACAAATACTTAACGAAACATTGCAGGAGCTAAGCAATATGGCGTGCATGATAAAATGCAACTAAATATCTTTTACGTGAAACAGACCTTATGTAAGTGTGAACTGACTGGGATAA]
consensusID : consensus_6196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[CCGAATTATTGACTAGCGGGAGTGGATTTGTGTACGATGAAACACTCTAAACGGATTGTTTCACTTTTGACGAACACAGTGCTGCTGGTTGGGATTATATTGGCTTTACCTGTGATAATAGCAATCTTGGTGTTGTTTCAAGTGCATCGACAAATAGTGGCGCAATTGCTGGCGATTAAATATGGCTCATCGTTCCGTGGGCTGCTGCAAGGATCGGATGTGGTGTGGGCAGGGCAGGAACGATCATCCAAGGCAGTGGCAAGCGTGTTGCTTCTGTTTGAGAAACCTGTGCATGTGTCAGACGACAGCGTGCATTTGCTGGAGCTGTTTCGTGATCGATTCAAACGTCTCCACACAGTTGATGCGTATCAGAAATTGTTCTGGCAAAGGCGCATTCAGTGGGGTTACTATTTTTGGATCAAACAGGGACTTCCGCTTTGGAGCGATCGTTACGTCAAACAGCTCGACGTGATTCCCACCAGCAGCAGCTGCCTTTCCAAAAGGCAACTTTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTGAGAGCGCAACAGTCTCGTTGTTTCGTTCGCAATTGTACTTGTGCTAATGT]
[+] EMBL BM578635 [CCGAATTATTGACTAGCGGGAGTGGATTTGTGTACGATGAAACACTCTAAACGGATTGTTTCACTTTTGACGAACACAGTGCTGCTGGTTGGGATTATATTGGCTTTACCTGTGATAATAGCAATCTTGGTGTTGTTTCAAGTGCATCGACAAATAGTGGCGCAATTGCTGGCGATTAAATATGGCTCATCGTTCCGTGGGCTGCTGCAAGGATCGGATGTGGTGTGGGCAGGGCAGGAACGATCATCCAAGGCAGTGGCAAGCGTGTTGCTTCTGTTTGAGAAACCTGTGCATGTGTCAGACGACAGCGTGCATTTGCTGGAGCTGTTTCGTGATCGATTCAAACGTCTCCACACAGTTGATGCGTATCAGAAATTGTTCTGGCAAAGGCGCATTCAGTGGGGTTACTATTTTTGGATCAAACAGGGACTTCCGCTTTGGAGCGATCGTTACGTCAAACAGCTCGACGTGATTCCCACCAGCAGCAGCTGCCTTTCCAAAAGGCAACTTTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTGAGAGCGCAACAGTCTCGTTGTTTCGTTCGCAATTGTACTTGTGCTAATGT]
consensusID : consensus_6196#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[CCGTGCTGGAGCTGTTTCGTGATCGATTCAAACGTCTCCACACAGTTGATGCGTATCAGAAATTGTTCTGGCAAAGGCGCATTCAGTGGGGTTACTATTTTTGGATCAAACAGGGACTTCCGCTTTGGAGCGATCGTTACGTCAAACAGCTCGACGTGATTCCCACCAGCAGCAGCTGCCTTTCCAAAAGGCAACTTTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTACCATCATTCAATCGCTGATGGAATTGCAATATTTCGAACGTTCTGCAAAGAATTTCTCGACAGTACGGCCACGGCGGAGGAACACGTGTGGAATCCAAATGCGGCCAATCAGACCTCGGTGAATGGTTTTTTCACTTGGCGCAATCTCTTCCGTATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTGCTCAAACGGGAATGCAGTCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGCAGGGCGACCAGCAAATCACGCGACTCCTGTGATAAGCGCAATCAAGACAGTCAAGCATTTGGTAAATGATTGCAGCTTTACAG]
[+] EMBL BM626340 [CCGTGCTGGAGCTGTTTCGTGATCGATTCAAACGTCTCCACACAGTTGATGCGTATCAGAAATTGTTCTGGCAAAGGCGCATTCAGTGGGGTTACTATTTTTGGATCAAACAGGGACTTCCGCTTTGGAGCGATCGTTACGTCAAACAGCTCGACGTGATTCCCACCAGCAGCAGCTGCCTTTCCAAAAGGCAACTTTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAAGACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCGGTACCATCATTCAATCGCTGATGGAATTGCAATATTTCGAACGTTCTGCAAAGAATTTCTCGACAGTACGGCCACGGCGGAGGAACACGTGTGGAATCCAAATGCGGCCAATCAGACCTCGGTGAATGGTTTTTTCACTTGGCGCAATCTCTTCCGTATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTGCTCAAACGGGAATGCAGTCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGCAGGGCGACCAGCAAATCACGCGACTCCTGTGATAAGCGCAATCAAGACAGTCAAGCATTTGGTAAATGATTGCAGCTTTACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6196#0 ------------------------------------------------------------
consensus_6196#2 CCGTGCTGGAGCTGTTTCGTGATCGATTCAAACGTCTCCACACAGTTGATGCGTATCAGA 60
consensus_6196#1 ------------------------------------------------------------
consensus_6196#0 ------------------------------------------------------------
consensus_6196#2 AATTGTTCTGGCAAAGGCGCATTCAGTGGGGTTACTATTTTTGGATCAAACAGGGACTTC 120
consensus_6196#1 ------------------------------------------------------------
consensus_6196#0 ------------------------------------------------------------
consensus_6196#2 CGCTTTGGAGCGATCGTTACGTCAAACAGCTCGACGTGATTCCCACCAGCAGCAGCTGCC 180
consensus_6196#1 -------------------------------------------------CCGAATTATTG 11
consensus_6196#0 --------AGGCAACTCTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTA 52
consensus_6196#2 TTTCCAAAAGGCAACTTTGTGCACTAATTGGCTCAATCAGCAATCGGGATTGCAATGGTA 240
consensus_6196#1 ACTAGCGGGAGTGGATTTGTGTACGATGAAACACTCTAAACGGATTGTTTCACTTTTG-A 70
* * **** ** * * * * * * * * * * * *
consensus_6196#0 CGAGCTGGGAGTTGCTCGTTGGAAG-ACAACCATTATGCC-ACGACGACAGCACTGT-AA 109
consensus_6196#2 CGAGCTGGGAGTTGCTCGTTGGAAG-ACAACCATTATGCC-ACGACGACAGCACTGT-AA 297
consensus_6196#1 CGAACACAGTGCTGCTGGTTGGGATTATATTGGCTTTACCTGTGATAATAGCAATCTTGG 130
*** * * * **** ***** * * * * * ** ** * **** * *
consensus_6196#0 TGCTGTACCCGGTCCTTTTCAGGTACCATCATTCAATCGCTGATGGAATTGCAATATTTC 169
consensus_6196#2 TGCTGTACCCGGT-----------ACCATCATTCAATCGCTGATGGAATTGCAATATTTC 346
consensus_6196#1 TGTTGTTTCAAGT------------GCATCGACAAATAG-TGGCGCAATTGCTGGCGATT 177
** *** * ** **** *** * ** * ****** *
consensus_6196#0 GAACGTTCTGCAAAGAATTCCTCGACAGTACGGGCACGGCGGAGGAACACGTGTGGAATC 229
consensus_6196#2 GAACGTTCTGCAAAGAATTTCTCGACAGTACGGCCACGGCGGAGGAACACGTGTGGAATC 406
consensus_6196#1 AAATATG--GCTCATCGTTCCGTGG-GCTGCTGCAAGGATCGGATGTGGTGTGGGCAGGG 234
** * ** * ** * * * * * * * * *** * *
consensus_6196#0 CAAATGCGGCCAATCA-GACCTCGGTGAAAG-GTTTTTTCACTTGGCGCAATCTCTTCCG 287
consensus_6196#2 CAAATGCGGCCAATCA-GACCTCGGTGAATG-GTTTTTTCACTTGGCGCAATCTCTTCCG 464
consensus_6196#1 CAGGAACGATCATCCAAGGCAGTGGCAAGCGTGTTGCTTCTGTTTGAGAAACCTGTGC-A 293
** ** ** ** * * ** * * *** *** ** * * ** ** * *
consensus_6196#0 TATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTACTCAAACGGGAATGCAA 347
consensus_6196#2 TATGGCTTACCGTGGGCCGAGATTTTTGGCACACGAAATATTGCTCAAACGGGAATGCAG 524
consensus_6196#1 TGTGTCAGACGACAGCGTGCATTTGCTGG------AGCTGTTTCGTGATCG---ATTCAA 344
* ** * ** * * ** *** * * ** * * ** ** **
consensus_6196#0 TCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGC 407
consensus_6196#2 TCCGTTCTACGGTCCGGAACCAAGCAATAATAAAATCGTCTGTTGGGCAGGCGACCATGC 584
consensus_6196#1 ACGTCTCCACACAGTTGATGCG---TATCAGAAATTGTTCTGGCAAAGGCGCATTCA-GT 400
* ** ** ** * ** * *** * **** ** ** *
consensus_6196#0 AGGGCGACCAGC---AAATCACGC---GACTCCGGCGATAAGCGCAATCAAGACAGTCAA 461
consensus_6196#2 AGGGCGACCAGC---AAATCACGC---GACTCCTGTGATAAGCGCAATCAAGACAGTCAA 638
consensus_6196#1 GGGGTTACTATTTTTGGATCAAACAGGGACTTCCGCTTTGGA-GCGATCGTTAC-GTCAA 458
*** ** * **** * **** * * * ** *** ** *****
consensus_6196#0 GCATTTGGTAAATGATTGCAGCT--TTACAGACATCTTGCTGACGGC--ATTTGCCACGA 517
consensus_6196#2 GCATTTGGTAAATGATTGCAGCT--TTACAG----------------------------- 667
consensus_6196#1 ACAGCTCG-ACGTGATTCCCACCAGCAGCAGCTGCCTTTCCAAAAGGCAACTTTGTGCAC 517
** * * * ***** * * ***
consensus_6196#0 GTCTTGGGGCGTACTGCAGGCGGAAGCGC--TTACCCGTGCCAACGACCG-TCACTATCG 574
consensus_6196#2 ------------------------------------------------------------
consensus_6196#1 TAATTGGCTCAATCAGCAATCGGGATTGCAATGGTACGAGCTGGGAGTTGCTCGTTGGAA 577
consensus_6196#0 GGCAGATGCGACGGTTCCATCGCGAGTCTGAAGTAATACAGCTGCGTAATCGCTCAACGG 634
consensus_6196#2 ------------------------------------------------------------
consensus_6196#1 GACAACCATTATGCCACGACGACAGCACTGTAATGCTGTACCCG-GTGAGAGCGCAACAG 636
consensus_6196#0 CTGTATTTAAATCGTTGCCAATAGGCAGTCTGCCA-TGCGGATCGAGCACNATCGACCAG 693
consensus_6196#2 ------------------------------------------------------------
consensus_6196#1 TCTCGTT-GTTTCGTTCGCAATTGTACTTGTGCTAATGT--------------------- 674
consensus_6196#0 CTCATATGCCAGATAAATGCTGTAAAAGGTCCAGACGACGCATTTCAGGCCAGTACAGAT 753
consensus_6196#2 ------------------------------------------------------------
consensus_6196#1 ------------------------------------------------------------
consensus_6196#0 GCTTTAATTACTCACCTGAGCGTGTCGTACCTTCCAGAGCTACTGCCGGCTGCAGTTGTA 813
consensus_6196#2 ------------------------------------------------------------
consensus_6196#1 ------------------------------------------------------------
consensus_6196#0 CGGGCATTATTTGCTAGAAGCAAGTTTTCGATTGCTCTGTCCAACATTCCTGCCTTCGTC 873
consensus_6196#2 ------------------------------------------------------------
consensus_6196#1 ------------------------------------------------------------
consensus_6196#0 GGCACTGTCTCTCTGGAAAGGTACATTCTCCGAGAGGCCACATTCTGGGTACCCAACATT 933
consensus_6196#2 ------------------------------------------------------------
consensus_6196#1 ------------------------------------------------------------
consensus_6196#0 GAGCGCAATCTGTTCGGGTTGACCTTACTGACAACGGACGGCCGCCTACAGATAGGTTCA 993
consensus_6196#2 ------------------------------------------------------------
consensus_6196#1 ------------------------------------------------------------
consensus_6196#0 ATCGCTGATAGGACAATAATTAAGGATGAAGAAGAACTCGAACAAATACTTAACGAAACA 1053
consensus_6196#2 ------------------------------------------------------------
consensus_6196#1 ------------------------------------------------------------
consensus_6196#0 TTGCAGGAGCTAAGCAATATGGCGTGCATGATAAAATGCAACTAAATATCTTTTACGTGA 1113
consensus_6196#2 ------------------------------------------------------------
consensus_6196#1 ------------------------------------------------------------
consensus_6196#0 AACAGACCTTATGTAAGTGTGAACTGACTGGGATAA 1149
consensus_6196#2 ------------------------------------
consensus_6196#1 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||