cluster # 6197

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6197 cluster # 6197 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6197#0 length = 1162 sequences # 4

consensus_6197#1 length = 483 sequences # 1

consensusID : consensus_6197#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1162
fasta sequence

                              [CCGCGGACGCGTGGGAAAGTGTAGAACGTGTCTATGTTGCGTTGCTCGTCCCGCAAACGATGGAATCAGAATTTGAAGGCTTTTCCAGTGGCAGTGAAATATTGACCAAACATGCCGATCGGTGGCATAAGGTGAGCTTCGGTGTACCGGTTTTCGATCGGCTTACGGGTGGCGGTATCGGTGCCCGGGGAATCTTCGAGCTGGCGGGTGATCCGGGATCGGGCAAAACACAGATCGCACTAAAGCTAGCACTGACGGCCCAGCGCACCGTGCCGAACTCCTGCGTGGTGTACATCTGCACCGAGCATAGGTTTCCTTCGCGCAGGCTGCTACAGATGGAGGCAGAATACAAACGCCAGCAGAGTGCGGATGATGCCGTCCGGGACCATAACTTTGTGGACCACATACTGGTGGAGCACGTATGGTGTGTGCCTACCCTGATGGCCTGTTTGTTCGATCGCCTGCCCAAGCTGCTGGAAAGCACAAAAATCAGTGTGCTCATCATCGATTCCATCGCGAGCCCATTCGTGGAGGAAAGGGACTACATTTCGCGGGCGGAAACCTTCCGCTCGATAGTGCACCGGCTGCACCAGCTGCAGGAGCGGCACAACTTTGCCATCTGCGTAACGAACCAGGTCCGTTCGGTGATCGACTCTTCAACGCTGGACGACCAGCGGAACGTACCGGCGCTGGGGCTCGCCTGGAGTACGCTGGTGCACAC-GCGCTTGCAGCTTTCCCGCACCACGCTAAGCTCGAACGATCGACGCTGCACGGTTGTGTTTGGACCATCGGCCCCACCGAAGCATGGCTTCTATCAGATCGACGAGTCGGGACCGGTGGATACCGAAGCCCTTCGAGTATCAATGAGCTGAGTAAGAAACAACTCCCACACATGTTTTGTAGCTTTTCTATTACACACCTCTCACTAGTGGTGTTCCAGCTTTATTATTGTTCATAGGAGATAGATGTCGTGATCGGGCCCATCCGTGCCGAATATACCTAATATCAGTAGAGTATGAGCGATCGCGCGAGTTGACCTCTTTTTTTTGCGGGAACGGTGAGATCTTTTCTGCCATACACACACATACACCAATTACAATCAATTTTCTTCGACCAAATACGATAAAAAGTAGAGAGTATATAGATTTGATTGTTAACAGTA]

[+] EMBL BM613329             [CCGCGGACGCGTGGGAAAGTGTAGAACGTGTCTATGTTGCGTTGCTCGTCCCGCAAACGATGGAATCAGAATTTGAAGGCTTTTCCAGTGGCAGTGAAATATTGACCAAACATGCCGATCGGTGGCATAAGGTGAGCTTCGGTGTACCGGTTTTCGATCGGCTTACGGGTGGCGGTATCGGTGCCCGGGGAATCTTCGAGCTGGCGGGTGATCCGGGATCGGGCAAAACACAGATCGCACTAAAGCTAGCACTGACGGCCCAGCGCACCGTGCCGAACTCCTGCGTGGTGTACATCTGCACCGAGCATAGGTTTCCCTCGCGCAGGCTGCTACAGATGGAGGCAGAATACAAACGCCAGCAGAGTGCGGATGATGCCGTCCGGGACCATAACTTTGTGGACCACATACTGGTGGAGCACGTATGGTGTGTGCCTACCCTGATGGCCTGTTTGTTCGATCGCCTGCCCAAGCTGCTGGAAAGCACAAAAATCAGTGTGCTCATCATCGATTCCATCGCGAGCCCATTCGTGGAGGAAAGGGACTACATTTCGCGGGCGGAAACCTTCCGCTCGATAGTGCACCGGCTGCACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX620640             [                                    TTGCGTTGCTCGTCCCGCAAACGATGGAATCAGAATTTGAAGGCTTTTCCAGTGGCAGTGAAATATTGACCAAACATGCCGATCGGTGGCGTAAGGTGAGCTTCGGTGNACCGGTTTTCGATCGGCTTACGGGTGGCGGTATCGGTGCCCGGGGAATCTTCGAGCTGGCGGGTGATCCGGGATCGGGCAAAACACAGATCGCACTAAAGCTAGCACTGACGGCCCAGCGCACCGTGCCGAACTCCTGCGTGGTGTACATCTGCACCGAGCATAGGTTTCCTTCGCGCAGGCTGCTACAGATGGAGGCAGAATACAAACGCCAGCAGAGTGCGGATGAT   GTCCGGGACCATAACTTTGTGGACCACATACTGGTGGAGCACGTATGGTGTGTGCCTACCCTGATGGCCTGTTTGTTCGATCGCCTGCCCAAGCTGCTGGAAAGCACAAAAATCAGTATGCTCATCATCGATTCCATCGCGAGCCCATTCTTGGAGGAAAGGGACTACATTTCGCGGGCGGAAACCTTCCGCTCGATAGTGCACCNGCTGCACCAGCTGCAGGAGCGGCACAACTTTGCCATCTGCGTAACGAACCAGGTCCGTTCGGTGATCGACTCTTCAACGCTGGACGACCAGCGGAACGTACCGGCGCTGGGGCTCGCCTGGAGTACGCTGGTGCACAC GCG                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CNS09FJD             [                                                                                                                                                                                                                 GATCCGGGATCGGGCAAAACACAGATCGCACTAAAGCTAGCGCTGACGGCCCAGCGCACCGTGCCGAACTCCTGCGTGGTGTACATCTGCACCGAGCATAGGTTTCCTTCGCGCAGGCTGCTACAGATGGAGGCAGAATACAAACGCCAGCAGAGTGCGGATGATGCCGTCCGGGACCATAACTTTGTGGACCACATACTGGTGGAGCACGTATGGTGTGTGCCCACCCTGATGGCCTGTTTGTTCGATCGCCTGCCCAAGCTGCTGGAAAGCACAAAAATCAGTGTGCTCATCATCGATTCCATCGCGAGCCCATTCGTGGAGGAAAGGGACTACATTTCGCGGGCGGAAACCTTTCGCTCGATAGTGCACCGGCTGCACCAGCTGCAGGAGCGGCACAACTTTGCCATCTGCGTAACGAACCAGGTCCGTTCGGTGATCGACTCTTCCACGCTGGACGACCAGCGGAACGTTCCGGCGCTGGGGCTCGCCTGGAGTACGCTGGTGCACAC GCGCTTGCAGCTTTCCCGCACCACGCTAAGCTCGAACGATCGACGCTGCACGGTTGTGTTTGGACCATCGGCCCCACCGAAGCATGGCTTCTATCAGATCGACGAGTCGGGACCGGTGGATACCGAAGCCCTTCGAGTATCAATGAGCTGAGTAAGAAACAACTCCCACACATGTTTTGTAGCTTTTCTATTACACACCTCTCACTAGTGGTGTTCCAGCTTTATTATTGTTCATAGGAGATAGATGTCGTGATCGGGCCCATCCGTGCCGAATATACCTAATATCAGTAGAGTATGAGCGATCGCGCGAGTTGACCTCTTTTTTTTGCGGGAACGGTGAGATCTTTTCTGCCATACACACACATACACCAATTACAATCAATTTTCTTCGACCAAATACGATAAAAAGTAGAGAGTATATAGATTTGATTGTTAACAGTA]
[-] EMBL CNS09FJE             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCGCCTGGAGTACGCTGGTGCAAACGGCGCTTGCAGCTTTCCCGCACCACGCTAAGCTCGAACGATCGACGCTGCACGGTTGTGTTTGGACCATCGGCCCCACCGAAGCATGGCTTTTATCAGATCGACGAGTCGGGACCGGTGGATACCGAAGCCCTTCGAGTATCAATGAGCTGAGTAAGAAACAACTCCCACACATGTTTTGTAGCTTTTCTATTACACACCTCTCACTAGTGGTGTTCCAGCTTTATTATTGTTCATAGGAGATAGATGTCGTGATCGGGCCCATCCGTGCCGAATATACCTAATATCAGTAGAGTATGAGCGATCGCGCGAGTTGACCTCTTTTTTTTGCGGGAACGGTGAGATCTTTTCTGCCATACACACACATACACCAATTACAAT                                                              ]




>consensus_6197#0
CCGCGGACGCGTGGGAAAGTGTAGAACGTGTCTATGTTGCGTTGCTCGTCCCGCAAACGA
TGGAATCAGAATTTGAAGGCTTTTCCAGTGGCAGTGAAATATTGACCAAACATGCCGATC
GGTGGCATAAGGTGAGCTTCGGTGTACCGGTTTTCGATCGGCTTACGGGTGGCGGTATCG
GTGCCCGGGGAATCTTCGAGCTGGCGGGTGATCCGGGATCGGGCAAAACACAGATCGCAC
TAAAGCTAGCACTGACGGCCCAGCGCACCGTGCCGAACTCCTGCGTGGTGTACATCTGCA
CCGAGCATAGGTTTCCTTCGCGCAGGCTGCTACAGATGGAGGCAGAATACAAACGCCAGC
AGAGTGCGGATGATGCCGTCCGGGACCATAACTTTGTGGACCACATACTGGTGGAGCACG
TATGGTGTGTGCCTACCCTGATGGCCTGTTTGTTCGATCGCCTGCCCAAGCTGCTGGAAA
GCACAAAAATCAGTGTGCTCATCATCGATTCCATCGCGAGCCCATTCGTGGAGGAAAGGG
ACTACATTTCGCGGGCGGAAACCTTCCGCTCGATAGTGCACCGGCTGCACCAGCTGCAGG
AGCGGCACAACTTTGCCATCTGCGTAACGAACCAGGTCCGTTCGGTGATCGACTCTTCAA
CGCTGGACGACCAGCGGAACGTACCGGCGCTGGGGCTCGCCTGGAGTACGCTGGTGCACA
CGCGCTTGCAGCTTTCCCGCACCACGCTAAGCTCGAACGATCGACGCTGCACGGTTGTGT
TTGGACCATCGGCCCCACCGAAGCATGGCTTCTATCAGATCGACGAGTCGGGACCGGTGG
ATACCGAAGCCCTTCGAGTATCAATGAGCTGAGTAAGAAACAACTCCCACACATGTTTTG
TAGCTTTTCTATTACACACCTCTCACTAGTGGTGTTCCAGCTTTATTATTGTTCATAGGA
GATAGATGTCGTGATCGGGCCCATCCGTGCCGAATATACCTAATATCAGTAGAGTATGAG
CGATCGCGCGAGTTGACCTCTTTTTTTTGCGGGAACGGTGAGATCTTTTCTGCCATACAC
ACACATACACCAATTACAATCAATTTTCTTCGACCAAATACGATAAAAAGTAGAGAGTAT
ATAGATTTGATTGTTAACAGTA

consensusID : consensus_6197#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [GCACCAGCTGCAGGAGCGGCACAACTTTGCCATCTGCGTAACGAACCAGGTCCGTTCGGTGATCGACTCTTCCACGCTGGACGACCAGCGGAACGTTCCGGCGCTGGGGCTCGCCTGGAGTACGCTGGTGCACACGCGCTTGCAGCTTTCCCGCACCACGCTAAGCTCGAACGATCGACGCTGCACGGTTGTGTTTGGACCATCGGCCCCACCGAAGCATGGCTTCTATCAGATCGACGAGTCGGGACCGGTGGATACCGAAGCCCTTCGAGTATCAATGAGCTGAGTAAGAAACAACTCCCACACATGTTTTGTAGCTTTTCTATTACACACCTCTCACTAGTGGTGTTCCAGCTTTATTATTGTTCATAGGAGATAGATGTCGTGATCGGGCCCATCCGTGCCGAATATACCTAATATCAGTAGAGTATGAGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGGGC]

[+] EMBL CNS08NU5             [GCACCAGCTGCAGGAGCGGCACAACTTTGCCATCTGCGTAACGAACCAGGTCCGTTCGGTGATCGACTCTTCCACGCTGGACGACCAGCGGAACGTTCCGGCGCTGGGGCTCGCCTGGAGTACGCTGGTGCACACGCGCTTGCAGCTTTCCCGCACCACGCTAAGCTCGAACGATCGACGCTGCACGGTTGTGTTTGGACCATCGGCCCCACCGAAGCATGGCTTCTATCAGATCGACGAGTCGGGACCGGTGGATACCGAAGCCCTTCGAGTATCAATGAGCTGAGTAAGAAACAACTCCCACACATGTTTTGTAGCTTTTCTATTACACACCTCTCACTAGTGGTGTTCCAGCTTTATTATTGTTCATAGGAGATAGATGTCGTGATCGGGCCCATCCGTGCCGAATATACCTAATATCAGTAGAGTATGAGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGGGC]




>consensus_6197#1
GCACCAGCTGCAGGAGCGGCACAACTTTGCCATCTGCGTAACGAACCAGGTCCGTTCGGT
GATCGACTCTTCCACGCTGGACGACCAGCGGAACGTTCCGGCGCTGGGGCTCGCCTGGAG
TACGCTGGTGCACACGCGCTTGCAGCTTTCCCGCACCACGCTAAGCTCGAACGATCGACG
CTGCACGGTTGTGTTTGGACCATCGGCCCCACCGAAGCATGGCTTCTATCAGATCGACGA
GTCGGGACCGGTGGATACCGAAGCCCTTCGAGTATCAATGAGCTGAGTAAGAAACAACTC
CCACACATGTTTTGTAGCTTTTCTATTACACACCTCTCACTAGTGGTGTTCCAGCTTTAT
TATTGTTCATAGGAGATAGATGTCGTGATCGGGCCCATCCGTGCCGAATATACCTAATAT
CAGTAGAGTATGAGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCG
GGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6197#0      CCGCGGACGCGTGGGAAAGTGTAGAACGTGTCTATGTTGCGTTGCTCGTCCCGCAAACGA 60
consensus_6197#1      ------------------------------------------------------------
                                                                                  

consensus_6197#0      TGGAATCAGAATTTGAAGGCTTTTCCAGTGGCAGTGAAATATTGACCAAACATGCCGATC 120
consensus_6197#1      ------------------------------------------------------------
                                                                                  

consensus_6197#0      GGTGGCATAAGGTGAGCTTCGGTGTACCGGTTTTCGATCGGCTTACGGGTGGCGGTATCG 180
consensus_6197#1      ------------------------------------------------------------
                                                                                  

consensus_6197#0      GTGCCCGGGGAATCTTCGAGCTGGCGGGTGATCCGGGATCGGGCAAAACACAGATCGCAC 240
consensus_6197#1      ------------------------------------------------------------
                                                                                  

consensus_6197#0      TAAAGCTAGCACTGACGGCCCAGCGCACCGTGCCGAACTCCTGCGTGGTGTACATCTGCA 300
consensus_6197#1      ------------------------------------------------------------
                                                                                  

consensus_6197#0      CCGAGCATAGGTTTCCTTCGCGCAGGCTGCTACAGATGGAGGCAGAATACAAACGCCAGC 360
consensus_6197#1      ------------------------------------------------------------
                                                                                  

consensus_6197#0      AGAGTGCGGATGATGCCGTCCGGGACCATAACTTTGTGGACCACATACTGGTGGAGCACG 420
consensus_6197#1      ------------------------------------------------------------
                                                                                  

consensus_6197#0      TATGGTGTGTGCCTACCCTGATGGCCTGTTTGTTCGATCGCCTGCCCAAGCTGCTGGAAA 480
consensus_6197#1      ------------------------------------------------------------
                                                                                  

consensus_6197#0      GCACAAAAATCAGTGTGCTCATCATCGATTCCATCGCGAGCCCATTCGTGGAGGAAAGGG 540
consensus_6197#1      ------------------------------------------------------------
                                                                                  

consensus_6197#0      ACTACATTTCGCGGGCGGAAACCTTCCGCTCGATAGTGCACCGGCTGCACCAGCTGCAGG 600
consensus_6197#1      ----------------------------------------------GCACCAGCTGCAGG 14
                                                                    **************

consensus_6197#0      AGCGGCACAACTTTGCCATCTGCGTAACGAACCAGGTCCGTTCGGTGATCGACTCTTCAA 660
consensus_6197#1      AGCGGCACAACTTTGCCATCTGCGTAACGAACCAGGTCCGTTCGGTGATCGACTCTTCCA 74
                      ********************************************************** *

consensus_6197#0      CGCTGGACGACCAGCGGAACGTACCGGCGCTGGGGCTCGCCTGGAGTACGCTGGTGCACA 720
consensus_6197#1      CGCTGGACGACCAGCGGAACGTTCCGGCGCTGGGGCTCGCCTGGAGTACGCTGGTGCACA 134
                      ********************** *************************************

consensus_6197#0      CGCGCTTGCAGCTTTCCCGCACCACGCTAAGCTCGAACGATCGACGCTGCACGGTTGTGT 780
consensus_6197#1      CGCGCTTGCAGCTTTCCCGCACCACGCTAAGCTCGAACGATCGACGCTGCACGGTTGTGT 194
                      ************************************************************

consensus_6197#0      TTGGACCATCGGCCCCACCGAAGCATGGCTTCTATCAGATCGACGAGTCGGGACCGGTGG 840
consensus_6197#1      TTGGACCATCGGCCCCACCGAAGCATGGCTTCTATCAGATCGACGAGTCGGGACCGGTGG 254
                      ************************************************************

consensus_6197#0      ATACCGAAGCCCTTCGAGTATCAATGAGCTGAGTAAGAAACAACTCCCACACATGTTTTG 900
consensus_6197#1      ATACCGAAGCCCTTCGAGTATCAATGAGCTGAGTAAGAAACAACTCCCACACATGTTTTG 314
                      ************************************************************

consensus_6197#0      TAGCTTTTCTATTACACACCTCTCACTAGTGGTGTTCCAGCTTTATTATTGTTCATAGGA 960
consensus_6197#1      TAGCTTTTCTATTACACACCTCTCACTAGTGGTGTTCCAGCTTTATTATTGTTCATAGGA 374
                      ************************************************************

consensus_6197#0      GATAGATGTCGTGATCGGGCCCATCCGTGCCGAATATACCTAATATCAGTAGAGTATGAG 1020
consensus_6197#1      GATAGATGTCGTGATCGGGCCCATCCGTGCCGAATATACCTAATATCAGTAGAGTATGAG 434
                      ************************************************************

consensus_6197#0      CGATCGCGCGAGTTGACCTCTTTTTTTTGCGGGAACGGTGAGATCTTTTCTGCCATACAC 1080
consensus_6197#1      CGAAAAAAAAAAAAAAAAAAAAA-----AAAAAAAAGGCCAAATGTGCCCGGGC------ 483
                      ***       *    *                 ** **  * ** *   * * *      

consensus_6197#0      ACACATACACCAATTACAATCAATTTTCTTCGACCAAATACGATAAAAAGTAGAGAGTAT 1140
consensus_6197#1      ------------------------------------------------------------
                                                                                  

consensus_6197#0      ATAGATTTGATTGTTAACAGTA 1162
consensus_6197#1      ----------------------