These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1278 fasta sequence [CCGACTAATCCTCTTCCTTGTTCAATCGCAACCGATGACCTATCGGTAAATAAGCGATCCCACAAGTCAAAACTTAGCGTTCGGTCGTGTTTTATGTGTTCGCTGCACACGGTGCACCGAACACAAAAAACCAACTAGGTTTTAGACCGCTCCTAGAGCCCCCTAGCCCACAAGGTTTCGCACTTGCAGAAGCTCTGAAGGAAACGGATTTTTAAAGCAAATCGTTGTTAATTTTATATTGTACATATTGTGAAGGTTTTCTCTGCGTCTTTCGCTGAAACTACAGCGATGGTAGAAGCAACCTCCTTCCGATCGTTCTACCGTTATCGAAGATCTATACCATTCATCGGTTATCATCCAAATTGTTTCGTGTGTCAAACCTCTATCAGTTTACAAAGTTTGAATTTCGGAAAATTGCTTTTTTGTGTCCATTGCCTCTGGAAGAGTATATAGAAGAGTGGGTGGGTGGGTGTGTGTAAATAAGATTGTTCGAGCAAACAGTTTGGAAGTATCAGCAATTTTTTGAAATAATCAAAGTTCACAAGTATTGAATGCAGTAACAAGACAAGCACACGAGTTCTTATCGGATATATGATATTATTGAAACCATCAAGCCCGATTTAAACGATCTACGATATGTTTCTTCGTTGAAATGACAGAAACTCGACAGCATAGCATTTGCATCTTACATCTTGTTGAGACATTTTCGTCAGAAGCCTGTGCGATGTAAAATACTGCTGATCAAGCAAAAACTGTACATTCAGTTCATGTATGATCTGTCGTATAATGTATGATCGTGTCTCCAACAATCGGGGAGGAACAGCGTGACGTTGATGATAAATGAGGAGGAATGTGCTGTTTATTTATTCTTCCCCCTTGAAGTAACCCC-TCCAACCAGCATATCCGCCTCGTTTAGCTACCTCTAGGCTGATAAGAACTTTGCAAAAAAGCTTACTATTCAAGCATCAATCACTACGGTCGCCAATCGTTAGATTTCGCGGAGAAACGTCCGATCGGCTCGATGTAACTGGTGTGGACAGGTCTGGTGCTCTTATTAGTCTCTTTTTCCTAAAGTACGTGGTGTGGTATCTACAACTATCTTTCTTTATTTCGAAAATTTGTACATAAGACTATACACTACAAACTGGTGATAAAAAAAAGAAAGAAATACGACACGCAAACGGATTCGAAAGCTCGATTAGTTGTACCATGGTAAACTCGATCGATATTCTCCGGTTATGTGACCTGTTGTTTTGNTTTGNTCGATAATTAAATAAA] [-] EMBL AGA280147 [CCGACTAATCCTCTTCCTTGTTCAATCGCAACCGATGACCTATCGGTAAATAAGCGATCCCACAAGTCAAAACTTAGCGTTCGGTCGTGTTTTATGTGTTCGCTGCACACGGTGCACCGAACACAAAAAA ] [+] EMBL BX615657 [ TTAGCGTTCGGTCGTGTTTTATGTGTTCTCTGCACACGGTGCACCGGATACCGCGGTCCAACTAGGTTTTAGACCGCTCCTAGAGCCCCCTAGCCCACAAGGTTTCGCACTTGCAGAAGCTCTGAAGGAAACGGATTTTTAAAGCAAATCGTTGTTAATTTTATATTGTACATATTGTGAAGGTTTTCTCTGCGTCTTTCGCTGAAACTACAGCGATGGTAGAAGCAACCTCCTTCCGATCGTTCTACCGTTATCGAAGATCTATACCATTCATCGGTTATCATCCAAATTGTTTCGTGTGTCAAACCTCTATCAGTTTACAAAGTTTGAATTTCGGAAAATTGCTTTTTTGTGTCCATTGCCTCTGGAAGAGTATATAGAAGAGTGGGTGGGTGGGTGTGTGTAAATAAGATTGTTCGAGCAAACAGTTTGGAAGTATCAGCAATTTTTTGAAATAATCAAAGTTCACAAGTATTGAATGCAGTAACAAGACAAGTACACGAGTTCTTATCGGATATATGATATTATTGAAACCATCAAGCCCGATTTAAACGATCTACGATATGTTTCTTCGTTGAAATGACAGAAACTCGACAGCATAGCATTTGCATCTTACATCTTGTTGAGACATTTTCGTCAGAAGCCTGTGCGATGTAAAATACTGCTGATCAAGCAAAAACTGTACATTCAGTTCATGTATGATCTGTCGTATAATGTATGATCGTGTCTCCAACA ] [+] EMBL BX610885 [ CCGATCGTTCTACCGTTATCGAAGATCTATACCATTCATCGGTTATCATCCAAATTGTTTCGTGTGTCAAACCTCTATCAGTTTACAAAGTTTGAATTTCGGAAAATTGCTTTTTTTTGTCCATTGCCTCTGGAAGAGTATATAGAAGAGTGGGTGGGTGGGTGTGTGTAAATAAGATTGTTCGAGCAAACAGTTTGGAAGTATCAGCAATTTTTTGAAATAATCAAAGTTCACAAGTATTGAATGCAGTAACAAGACAAGCACACGAGTTCTTATCGGATATATGATATTATTGAAACCATCAAGCCCGATTTAAACGATCTACGATATGTTTCTTCGTTGAAATGACAGAAACTCGACAGCATAGCATTTGCATCTTACATCTTGTTGAGACATTTTCGTCAGAAGCCTGTGCGATGTAAAATACTGCTGATCAAGCAAAAACTGTACATTCAGTTCATGTATGATCTGTCGTATAATGTATGATCGTGTCTCCAACAATCGGGGAGGAACAGCGTGACGTTGATGATAAATGAGGAGGAATGTGCTGTTTATTTATTCTTCCCCCTTGAAGTAACCCC TCCAACCAGCATATCCGCCTCGTTTAGCTACCTCTAGGCTGATAAGAACTTTGCAAAAAAGCTTACTATTCAAGCATCAATCACTACGGTCGCCAATCGTTAGATTTCGCGGAGAAACGT ] [+] EMBL BX626463 [ GCAGTAACAAGACAAGCACACGAGTTCTTATCGGATATATGATATTATTGAAACCATCAAGCCCGATTTAAACGATCTACGATCTGTTTCTTCGTTGAAATGACAGAAACTCGACAGCATAGCATTTGCATCTTACATCTTGTTGAGACATTTTCGTCAGAAGCCTGTGCGATGTAAAATACTGCTGATCAAGCAACAACTGTACATTCAGTTCATGTATGATCTGTCGTATAATGTATGATCGTGTCTCCAACAATCGGGGAGGAACAGCGTGACGTTGATGATAAATGAGGAGGAATGTGCTGTTTATTTATTCTTCCCCCTTGCAGTAACCCCATCCACCCAGCATATCCGCCTCGTTTAGCTACCTCTAGGCTGATAAGAACTTTGCAAAAAAGCTTACTATTCAAGCATCAATCACTACGGTTGCCAATCGTTAGATTTCGCGGAGAAGCGTCCGATCGGCTCGATGTAACTGGTGTGGACAGGTCTGGTGCTCTTATTAGTCTCTTTTTCCTAAAGTACGTGGTGTGGTATCTACAACTATCTTTCTTTATTTCGAAAATTTGTACATAAGACTATACACTACAAACTGGTGATAAAAAAAAGAAAGAAATACGACACGCAAACGGATTCGAAAGCTCGATTAGTTGTACCATGGTAAACTCGATCGATATTCTCCGGTTATGTGACCTGTTGTTTTGNTTTGNTCGATAATTAAATAAA] consensusID : consensus_6200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 133 fasta sequence [CCTCTTCCTTGTTCAATCGCAACCGATGACCTATCGGTAAATAAGCGATCCCACAAGTCAAAACTTAGCGTTCGGTCGTGTTTTATGTGTTCGCTGCACACGGTGCACCGAACACTATAAAAAAAAGAAAAAA] [+] EMBL AGA281848 [CCTCTTCCTTGTTCAATCGCAACCGATGACCTATCGGTAAATAAGCGATCCCACAAGTCAAAACTTAGCGTTCGGTCGTGTTTTATGTGTTCGCTGCACACGGTGCACCGAACACTATAAAAAAAAGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6200#0 CCGACTAATCCTCTTCCTTGTTCAATCGCAACCGATGACCTATCGGTAAATAAGCGATCC 60 consensus_6200#1 ---------CCTCTTCCTTGTTCAATCGCAACCGATGACCTATCGGTAAATAAGCGATCC 51 *************************************************** consensus_6200#0 CACAAGTCAAAACTTAGCGTTCGGTCGTGTTTTATGTGTTCGCTGCACACGGTGCACCGA 120 consensus_6200#1 CACAAGTCAAAACTTAGCGTTCGGTCGTGTTTTATGTGTTCGCTGCACACGGTGCACCGA 111 ************************************************************ consensus_6200#0 ACACAAAAAACCAACTAGGTTTTAGACCGCTCCTAGAGCCCCCTAGCCCACAAGGTTTCG 180 consensus_6200#1 ACACTATAAAAAAAAGAAAAAA-------------------------------------- 133 **** * *** ** * consensus_6200#0 CACTTGCAGAAGCTCTGAAGGAAACGGATTTTTAAAGCAAATCGTTGTTAATTTTATATT 240 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 GTACATATTGTGAAGGTTTTCTCTGCGTCTTTCGCTGAAACTACAGCGATGGTAGAAGCA 300 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 ACCTCCTTCCGATCGTTCTACCGTTATCGAAGATCTATACCATTCATCGGTTATCATCCA 360 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 AATTGTTTCGTGTGTCAAACCTCTATCAGTTTACAAAGTTTGAATTTCGGAAAATTGCTT 420 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 TTTTGTGTCCATTGCCTCTGGAAGAGTATATAGAAGAGTGGGTGGGTGGGTGTGTGTAAA 480 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 TAAGATTGTTCGAGCAAACAGTTTGGAAGTATCAGCAATTTTTTGAAATAATCAAAGTTC 540 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 ACAAGTATTGAATGCAGTAACAAGACAAGCACACGAGTTCTTATCGGATATATGATATTA 600 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 TTGAAACCATCAAGCCCGATTTAAACGATCTACGATATGTTTCTTCGTTGAAATGACAGA 660 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 AACTCGACAGCATAGCATTTGCATCTTACATCTTGTTGAGACATTTTCGTCAGAAGCCTG 720 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 TGCGATGTAAAATACTGCTGATCAAGCAAAAACTGTACATTCAGTTCATGTATGATCTGT 780 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 CGTATAATGTATGATCGTGTCTCCAACAATCGGGGAGGAACAGCGTGACGTTGATGATAA 840 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 ATGAGGAGGAATGTGCTGTTTATTTATTCTTCCCCCTTGAAGTAACCCCTCCAACCAGCA 900 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 TATCCGCCTCGTTTAGCTACCTCTAGGCTGATAAGAACTTTGCAAAAAAGCTTACTATTC 960 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 AAGCATCAATCACTACGGTCGCCAATCGTTAGATTTCGCGGAGAAACGTCCGATCGGCTC 1020 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 GATGTAACTGGTGTGGACAGGTCTGGTGCTCTTATTAGTCTCTTTTTCCTAAAGTACGTG 1080 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 GTGTGGTATCTACAACTATCTTTCTTTATTTCGAAAATTTGTACATAAGACTATACACTA 1140 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 CAAACTGGTGATAAAAAAAAGAAAGAAATACGACACGCAAACGGATTCGAAAGCTCGATT 1200 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 AGTTGTACCATGGTAAACTCGATCGATATTCTCCGGTTATGTGACCTGTTGTTTTGNTTT 1260 consensus_6200#1 ------------------------------------------------------------ consensus_6200#0 GNTCGATAATTAAATAAA 1278 consensus_6200#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||