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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1527 fasta sequence
[CCGCGGACGCGTGGGCGAAGGTCCTAGCAAAGCCGACATTACCTACCATGACAACAAGGATGGTACGGTTTCGGTGTCGTACTTGCCGACCGCCCCCGGCGAGTACAAAATCTCCGTCCGCTTTGGTGACAAGCATATCAAGGGATCGCCCTACTTCGCGAAGATCACTGGCGAGGGCCGCAAGCGTAACCAGATTTCGGTCGGCTCCTGCTCGGAGGTGACGCTGCCCGGTGTGATCAGCGATAACGATCTGCGCTCGCTGAACGCCTCGATCCAGGCTCCGTCCGGGCTGGAGGAGCCGTGCTTCCTGAAACGTATGCCCACCGGCAACATCGGCATCTCGTTCACGCCGCGCGAGATTGGCGAGCACACCGTGTCGGTGAAGCGTTTGGGCAAGCACATCGCCAACTCACCGTTCAAGGTGAACGTGTGCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATCGTGACGGGCAACGCGCTGAAGGAGGGCAAAACGCACCAGGACAACGTGTTCTCGATCGATACGCGCAACGCCGGCTACGGTGGGCTGTCGCTCTCGATCGAGGGCCCGAGTAAGGCGGAGATCCAGTGCACGGACAAGGACGACGGCACGCTCAACATCGCGTACAAACCGACCGAGCCGGGCTACTACATCGTGAACCTCAAGTTCGCCGACCATCACGTCACCGGATCGCCGTTCACGGTGAAGGTTTCGGGCGAGGGCACCAACCGGCAGCGCGAGAAGATCCAGCGCCAGCGGGAGGCCGTGCCGATCACCGAGGTGGGCAGCCAGTGCAAGCTGACGTTCAAGATGCCCGGCATTACGTCGTTCGATCTGTCCGCCACGGTCACGTCGCCGGGTGGCGTGAGCGAGGATGCCGAGATCCAGGAGATTGAGGATGGCCTGTACGCGGTGCACTTCATCCCGAAGGGAGCTGGGCGTGCACACGGTTTCGGTCAAGTACAAGCAGATCCATATTCCTGGATCGCCATTCCAGTTTACCGTTGGTCCGCTGAAGGATACCGGCGCGCATCTGGTCAAGGCCGGCGGTCCGGGTCTGGAGCACGGCGAACAGGGCGTACCGGCCGAGTTTAACGTATGGACGCGCGAAGCTGGCGGTGGCACTTTGGCCATCTCCGTGGAGGGCCCCAGCAAGGCAGAGATCGAGTTCAAGGATCGCAAGGACGGCTCCTGCGATGTTTCGTACGTCGTCAGTGAACCAGGTGACTACCGTATCGGCTTGAAGTTCAACGATCGCCATATTCCGGACTCTCCGTTCAAGGTTTACATTTCGCCGGCCATGGGCGAGGCCCACAAGCTAGAGGTGGCTCAGTTCCCGACTGGCTGCGTGCAAGCTGACAAGCCGGCCCAGTTTATGGTCCGTAAGAACGGTGCCAAGGGAGAGCTTGACGCGAAGGTCGTTGCTCCCTCGAACAACGAGGACGATTGTTTCATCCAGCTGATCGACCAGGATCAGTAACTCGGTGCGGTTCTATCCGCGCGAGAACGGCATCCACGCGATC]
[+] EMBL BM654298 [CCGCGGACGCGTGGGCGAAGGTCCTAGCAAAGCCGACATTACCTACCATGACAACAAGGATGGTACGGTTTCGGTGTCGTACTTGCCGACCGCCCCCGGCGAGTACAAAATCTCCGTCCGCTTTGGTGACAAGCATATCAAGGGATCGCCCTACTTCGCGAAGATCACTGGCGAGGGCCGCAAGCGTAACCAGATTTCGGTCGGCTCCTGCTCGGAGGTGACGCTGCCCGGTGTGATCAGCGATAACGATCTGCGCTCGCTGAACGCCTCGATCCAGGCTCCGTCCGGGCTGGAGGAGCCGTGCTTCCTGAAACGTATGCCCACCGGCAACATCGGCATCTCGTTCACGCCGCGCGAGATTGGCGAGCACACCGTGTCGGTGAAGCGTTTGGGCAAGCACATCGCCAACTCACCGTTCAAGGTGAACGTGTGCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATCGTGACGGGCAACGCGCTGAAGGAGGGCAAAACGCACCAGGACAACGTGTTCTCGATCGATACGCGCAACGCCGGCTACGGTGGGCTGTCGCTCTCGATCGAGGGCCCGAGTAAGGCGGAGATCCAGTGCACGGACAAGGACGACGGCACGCTCAACATCGC ]
[+] EMBL BM582835 [ ccgCGCATGCCCACCGGCAACATCGGCATCTCGTTCACGCCGCGCGAGATTGGCGAGCACACCGTGTCGGTGAAGCGTTTGGGCAAGCACATCGCCAACTCACCGTTCAAGGTGAACGTGTGCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATCGTGACGGGCAACGCGCTGAAGGAGGGCAAAACGCACCAGGACAACGTGTTCTCGATCGATACGCGCAACGCCGGCTACGGTGGGCTGTCGCTCTCGATCGAGGGCCCGAGTAAGGCGGAGATCCAGTGCACGGACAAGGACGACGGCACGCTCAACATCGCGTACAAACCGACCGAGCCGGGCTACTACATCGTGAACCTCAAGTTCGCCGACCATCACGTCACCGGATCGCCGTTCACGGTGAAGGTTTCGGGCGAGGGCACCAACCGGCAGCGCGAGAAGATCCAGCGCCAGCGGGAGGCCGTGCCGATCACCGAGGTGGGCAGCCAGTGCAAGCTGACGTTCAAGATGCCCGGCATTACGTCGTTCGATCTGTCCGCCACGGTCACGTCGCCGGGTGGCGTGAGCGAGGATGCCGAGATCCAGGAGATTGAGGATGGCCTGTACGCGGTGCACTTCATCCCGAAGGGAGCTGGGCGTGCACACGGTTTCGGTCAAGTACAAGCAGATCCATATTCCTGGATCGCCATTCCAGTT ]
[+] EMBL BM585691 [ ccGCGAGGATGCCGAGATCCAGGAGATTGAGGATGGCCTGTACGCGGTGCACTTCATCCCGAA GGAGCTGGGCGTGCACACGGTTTCGGTCAAGTACAAGCAGATCCATATTCCTGGATCGCCATTCCAGTTTACCGTTGGTCCGCTGAAGGATACCGGCGCGCATCTGGTCAAGGCCGGCGGTCCGGGTCTGGAGCACGGCGAACAGGGCGTACCGGCCGAGTTTAACGTATGGACGCGCGAAGCTGGCGGTGGCACTTTGGCCATCTCCGTGGAGGGCCCCAGCAAGGCAGAGATCGAGTTCAAGGATCGCAAGGACGGCTCCTGCGATGTTTCGTACGTCGTCAGTGAACCAGGTGACTACCGTATCGGCTTGAAGTTCAACGATCGCCATATTCCGGACTCTCCGTTCAAGGTTTACATTTCGCCGGCCATGGGCGAGGCCCACAAGCTAGAGGTGGCTCAGTTCCCGACTGGCTGCGTGCAAGCTGACAAGCCGGCCCAGTTTATGGTCCGTAAGAACGGTGCCAAGGGAGAGCTTGACGCGAAGGTCGTTGCTCCCTCGAACAACGAGGACGATTGTTTCATCCAGCTGATCGACCAGGATCAGTAACTCGGTGCGGTTCTATCCGCGCGAGAACGGCATCCACGCGATC]
consensusID : consensus_6205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTCAAGGCCGGCGGTCCGGGTCTGGAGCACGGCGAACAGGGCGTACCGGCCGAGTTTAACGTATGGACGCGCGAAGCTGGCGGTGGCACTTTGGCCATCTCCGTGGAGGGCCCCAGCAAGGCAGAGATCGAGTTCAAGGATCGCAAGGACGGCTCCTGCGATGTTTCGTACGTCGTCAGTGAACCAGGCGACTACCGCATCGGCTTGAAGTTCAACGATCGCCATATTCCGGACTCTCCGTTCAAGGTTTACATCTCGCCGGCCATGGGCGAGGCCCACAAGCTAGAGGTGGCTCAGTTCCCGACTGGCTGCGTGCAAGCTGACAAGCCTGCCCAGTTTATGGTCCGTAAGAACGGTGCCAAGGGAGAGCTTGACGCGAAGGTCGTTGCTCCCTCGAACAACGAGGACGATTGTTTCATCCAGCTGATCGACCAGGATCAGTACTCGGTGCGGTTCTATCCGCGCGAGAACGGCATCCACGCGATCCACGTCAAGTTCAACGGTGTGCACATACCCGGCTCGCCGTACCGCATC]
[+] EMBL BM656144 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCAAGGCCGGCGGTCCGGGTCTGGAGCACGGCGAACAGGGCGTACCGGCCGAGTTTAACGTATGGACGCGCGAAGCTGGCGGTGGCACTTTGGCCATCTCCGTGGAGGGCCCCAGCAAGGCAGAGATCGAGTTCAAGGATCGCAAGGACGGCTCCTGCGATGTTTCGTACGTCGTCAGTGAACCAGGCGACTACCGCATCGGCTTGAAGTTCAACGATCGCCATATTCCGGACTCTCCGTTCAAGGTTTACATCTCGCCGGCCATGGGCGAGGCCCACAAGCTAGAGGTGGCTCAGTTCCCGACTGGCTGCGTGCAAGCTGACAAGCCTGCCCAGTTTATGGTCCGTAAGAACGGTGCCAAGGGAGAGCTTGACGCGAAGGTCGTTGCTCCCTCGAACAACGAGGACGATTGTTTCATCCAGCTGATCGACCAGGATCAGTACTCGGTGCGGTTCTATCCGCGCGAGAACGGCATCCACGCGATCCACGTCAAGTTCAACGGTGTGCACATACCCGGCTCGCCGTACCGCATC]
consensusID : consensus_6205#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[CCGCCCACGCGTCCGTGCAAATGGCCGTCGAAGGTCCTAGCAAAGCCGACATTACCTACCATGACAACAAGGATGGTACGGTTTCGGTGTCGTACTTGCCGACCGCCCCCGGCGAGTACAAAATCTCCGTCCGCTTTGGTGACAAGCATATCAAGGGATCGCCCTACTTCGCGAAGATCACTGGCGAGGGCCGCAAGCGTAACCAGATTTCGGTCGGCTCCTGCTCGGAGGTGACGCTGCCCGGTGTGATCAGCGATAACGATCTGCGCTCGCTGAACGCCTCGATCCAGGCTCCGTCCGGGCTGGAGGAGCCGTGCTTCCTGAAACGTATGCCCACCGGCAACATCGGCATCTCGTTCACGCCGCGCGAGATTGGCGAGCACACCGTGTCGGTGAAGCGTTTGGGCAAGCACATCGCCAACTCACCGTTCAAGGTGAACGTGTGCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATCGTGACGGGCAACGCGCTGAAGGAGGGCAAAACGCACCAGGACA]
[+] EMBL BM638297 [CCGCCCACGCGTCCGTGCAAATGGCCGTCGAAGGTCCTAGCAAAGCCGACATTACCTACCATGACAACAAGGATGGTACGGTTTCGGTGTCGTACTTGCCGACCGCCCCCGGCGAGTACAAAATCTCCGTCCGCTTTGGTGACAAGCATATCAAGGGATCGCCCTACTTCGCGAAGATCACTGGCGAGGGCCGCAAGCGTAACCAGATTTCGGTCGGCTCCTGCTCGGAGGTGACGCTGCCCGGTGTGATCAGCGATAACGATCTGCGCTCGCTGAACGCCTCGATCCAGGCTCCGTCCGGGCTGGAGGAGCCGTGCTTCCTGAAACGTATGCCCACCGGCAACATCGGCATCTCGTTCACGCCGCGCGAGATTGGCGAGCACACCGTGTCGGTGAAGCGTTTGGGCAAGCACATCGCCAACTCACCGTTCAAGGTGAACGTGTGCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATCGTGACGGGCAACGCGCTGAAGGAGGGCAAAACGCACCAGGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6205#0 ------------CCGCGGACGCG-TGGGCGAAGGTCCTAGCAAAGCCGACATTACCTACC 47
consensus_6205#2 CCGCCCACGCGTCCGTGCAAATGGCCGTCGAAGGTCCTAGCAAAGCCGACATTACCTACC 60
consensus_6205#1 CCGCCCACGCGTCCGCCCACGCGTCCGGTCAAGGCC--GGCGGTCCGGGTCTGG---AGC 55
*** * * * **** * ** * * * * *
consensus_6205#0 ATGACAACAAGGATGGTACGGTTTCGGTGTCGTACTTGC-CGACCGCCCCCGGCGAGTAC 106
consensus_6205#2 ATGACAACAAGGATGGTACGGTTTCGGTGTCGTACTTGC-CGACCGCCCCCGGCGAGTAC 119
consensus_6205#1 ACGGCGAACAGGGCG-TACCGGCCGAGTTTAACGTATGGACGCGCGAAGCTGGCGGTGGC 114
* * * * *** * *** * ** * ** ** ** * **** *
consensus_6205#0 AAAATCTCCGTCCGCTTTGGTGACA--AGCATATCAAGGGATCGCCCT---ACTTCGCGA 161
consensus_6205#2 AAAATCTCCGTCCGCTTTGGTGACA--AGCATATCAAGGGATCGCCCT---ACTTCGCGA 174
consensus_6205#1 ACTTTGGCCATCTCCGTGGAGGGCCCCAGCAAGGCA-GAGATCGAGTTCAAGGATCGCAA 173
* * ** ** * * * * * **** ** * ***** * **** *
consensus_6205#0 AGATCACTGGCGAGG-GCCGCAAGCGTAACCAG-ATTTCGGTCGGCTCCTGCTCGGAGGT 219
consensus_6205#2 AGATCACTGGCGAGG-GCCGCAAGCGTAACCAG-ATTTCGGTCGGCTCCTGCTCGGAGGT 232
consensus_6205#1 GGACGGCTCCTGCGATGTTTCGTACGTCGTCAGTGAACCAGGCGACTACCGCATCGGCTT 233
** ** * * * * *** *** * * ** ** * ** * *
consensus_6205#0 GACGCTGCCCGGTGTGATCAGCGATAACGATCTGCGCTCGCTGAACGCCTCGAT--CCA- 276
consensus_6205#2 GACGCTGCCCGGTGTGATCAGCGATAACGATCTGCGCTCGCTGAACGCCTCGAT--CCA- 289
consensus_6205#1 GAAGTTCAACGATCGCCATATTCCGGACTCTCCGTTCAAGGTTTACATCTCGCCGGCCAT 293
** * * ** * * ** ** * * * * ** **** ***
consensus_6205#0 -GGCTCCGTCCG--GGCTGGAGGAGCCGTGCTTCCTGA---AACGTATGCCCACCGGCAA 330
consensus_6205#2 -GGCTCCGTCCG--GGCTGGAGGAGCCGTGCTTCCTGA---AACGTATGCCCACCGGCAA 343
consensus_6205#1 GGGCGAGGCCCACAAGCTAGAGGTGGCTCAGTTCCCGACTGGCTGCGTGCAAGCTGACAA 353
*** * ** *** **** * * **** ** * *** * * ***
consensus_6205#0 CATCG----GCATCTCGTTCAC---------GCCGCGCGAGA--TTGGCGAGCACACCGT 375
consensus_6205#2 CATCG----GCATCTCGTTCAC---------GCCGCGCGAGA--TTGGCGAGCACACCGT 388
consensus_6205#1 GCCTGCCCAGTTTATGGTCCGTAAGAACGGTGCCAAGGGAGAGCTTGACGCGAAGGTCGT 413
* * * * ** * *** * **** *** ** * * ***
consensus_6205#0 G---TCGGTGAAGCGTTTGGGCAAGCACATCG-CCAACTCACCGTTCAAGGTGAACGTGT 431
consensus_6205#2 G---TCGGTGAAGCGTTTGGGCAAGCACATCG-CCAACTCACCGTTCAAGGTGAACGTGT 444
consensus_6205#1 TGCTCCCTCGAACAACGAGGACGATTGTTTCATCCAGCTGATCGACCAGGATCAGTACTC 473
* *** ** * * ** *** ** * ** ** * * *
consensus_6205#0 GCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATC--GTGACGGGCAACGCGCTGAA-GG 488
consensus_6205#2 GCGAGCGCGAGGTGGGTGACGCGAAAAAGGTGATC--GTGACGGGCAACGCGCTGAA-GG 501
consensus_6205#1 G---GTGCGGTTCTATCCGCGCGAGAACGGCATCCACGCGATCCACGTCAAGTTCAACGG 530
* * *** ***** ** ** * * ** * * * * ** **
consensus_6205#0 AGGGCAAA-ACGCACCAGGACAACGTGTTCTCGATCGATACGCGCAACGCCGGCTACGGT 547
consensus_6205#2 AGGGCAAA-ACGCACCAGGACA-------------------------------------- 522
consensus_6205#1 TGTGCACATACCCGGCTCGCCGTACCGCATC----------------------------- 561
* *** * ** * * * *
consensus_6205#0 GGGCTGTCGCTCTCGATCGAGGGCCCGAGTAAGGCGGAGATCCAGTGCACGGACAAGGAC 607
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 GACGGCACGCTCAACATCGCGTACAAACCGACCGAGCCGGGCTACTACATCGTGAACCTC 667
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 AAGTTCGCCGACCATCACGTCACCGGATCGCCGTTCACGGTGAAGGTTTCGGGCGAGGGC 727
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 ACCAACCGGCAGCGCGAGAAGATCCAGCGCCAGCGGGAGGCCGTGCCGATCACCGAGGTG 787
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 GGCAGCCAGTGCAAGCTGACGTTCAAGATGCCCGGCATTACGTCGTTCGATCTGTCCGCC 847
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 ACGGTCACGTCGCCGGGTGGCGTGAGCGAGGATGCCGAGATCCAGGAGATTGAGGATGGC 907
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 CTGTACGCGGTGCACTTCATCCCGAAGGGAGCTGGGCGTGCACACGGTTTCGGTCAAGTA 967
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 CAAGCAGATCCATATTCCTGGATCGCCATTCCAGTTTACCGTTGGTCCGCTGAAGGATAC 1027
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 CGGCGCGCATCTGGTCAAGGCCGGCGGTCCGGGTCTGGAGCACGGCGAACAGGGCGTACC 1087
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 GGCCGAGTTTAACGTATGGACGCGCGAAGCTGGCGGTGGCACTTTGGCCATCTCCGTGGA 1147
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 GGGCCCCAGCAAGGCAGAGATCGAGTTCAAGGATCGCAAGGACGGCTCCTGCGATGTTTC 1207
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 GTACGTCGTCAGTGAACCAGGTGACTACCGTATCGGCTTGAAGTTCAACGATCGCCATAT 1267
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 TCCGGACTCTCCGTTCAAGGTTTACATTTCGCCGGCCATGGGCGAGGCCCACAAGCTAGA 1327
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 GGTGGCTCAGTTCCCGACTGGCTGCGTGCAAGCTGACAAGCCGGCCCAGTTTATGGTCCG 1387
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 TAAGAACGGTGCCAAGGGAGAGCTTGACGCGAAGGTCGTTGCTCCCTCGAACAACGAGGA 1447
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 CGATTGTTTCATCCAGCTGATCGACCAGGATCAGTAACTCGGTGCGGTTCTATCCGCGCG 1507
consensus_6205#2 ------------------------------------------------------------
consensus_6205#1 ------------------------------------------------------------
consensus_6205#0 AGAACGGCATCCACGCGATC 1527
consensus_6205#2 --------------------
consensus_6205#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||