cluster # 6211

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Anopheles gambiae
cluster # 6211 cluster # 6211 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6211#0 length = 887 sequences # 4

consensus_6211#1 length = 665 sequences # 1

consensusID : consensus_6211#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 887
fasta sequence

                              [CCGCGGACGCGTGGGGCAGGTGAACATCCGCCGCAGAAAGTTGAGCAACAAACGAGATCCGAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCGTATGGTGTGCGGTGGTGGTGGTGTGCTGTGTCGTGGCTGGCCCACTCCCAGCGGAACACCCGAATGATCATTCCGAGTCCTCCGGCTCCTCGTCCCAGGAGAAAGATCAAGGCTACCCGCTCAACTCGCTGTACAGTCCGCTCGAGTACGGTGCGACGGTGGAGAGTGACGAGGCGACACTCATCGGTGGCAACAGCACCCAGAACACTACCAAGGAGTTGTACGTGATCAAAGCGGTGGTGTATGAAATTGGAATTCTGGCCGACGTGCCCGAGAACGAAACGCTCGAAGGAGATGAACCAATCACCCACCAGCAGGTCGATCTGTCCTTCTTCAGCCACGGCGGTAACGATACGCACCTCGATCTGGGCGACATTCCCGTGCCCATCCAGACGAGCGTGCAGGGGCAGGTGTTCACCGGTATCGCCCCGGTGCATGTCGGCACCGTGCCGACCAAGCTGAGCGATCTGCTGTCCGCCCTGCCGATCGCCGGCACGGTGGTGGAACATTTTCGCAAACCAACAGCTCGTACGTGGAGGGGCACAAGCACAACATTAGCGATGCGGCCGTCCTGCTGCAGGGGCAGAACGATCTGAGCAGCTTACCGTTTGGCAGCTCCGTGAGCGAACCGCTGGTGCCGGCGAGCGTGGACGAGACGGTTGTTGGACTGACGAACAAGGCGAAAACGCCGGAAGCGGAGAACCATTGAGTGTAGAGTAAAAGGGACAGAAAGGGCAGATGTGTGTGTTTAGCATAAGATATACCTA]

[+] EMBL BM650599             [CCGCGGACGCGTGGGGCAGGTGAACATCCGCCGCAGAAAGTTGAGCAACAAACGAGATCCGAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCGTATGGTGTGCGGTGGTGGTGGTGTGCTGTGTCGTGGCTGGCCCACTCCCAGCGGAACACCCGAATGATCATTCCGAGTCCTCCGGCTCCTCGTCCCAGGAGAAAGATCAAGGCTACCCGCTCAACTCGCTGTACAGTCCGCTCGAGTACGGTGCGACGGTGGAGAGTGACGAGGCGACACTCATCGGTGGCAACAGCACCCAGAACACTACCAAGGAGTTGTACGTGATCAAAGCGGTGGTGTATGAAATTGGAATTCTGGCCGACGTGCCCGAGAACGAAACGCTCGAAGGAGATGAACCAATCACCCACCAGCAGGTCGATCTGTCCTTCTTCAGCCACGGCGGTAACGATACGCACCTCGATCTGGGCGACATTCCCGTGCCCATCCAGACGAGCGTGCAGGGGCAGGTGTTCACCGGTATCGCCCCGGTGCATGTCGGCACCGTGCCGACCAAGCTGAGCGATCTGCTGTCCGCCCTGCCGATCGCCGGCACGGTGGTGGAACATTTTCGCAAACCAACAGCTCGTACGTGGAGGGGCACAAGCACAACATT                                                                                                                                                                                                                   ]
[+] EMBL BM592326             [           ccgcGCAGGTGAACATCCGCCGCAGAAAGTTGAGCAACAAACGAGATCCGAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCGTATGGTGTGCGGTGGTGGTGGTGTGCTGTGTCGTGGCTGGCCCACTCCCAGCGGAACACCCGAATGATCATTCCGAGTCCTCCGGCTCCTCGTCCCAGGAGAAAGATCAAGGCTACCCGCTCAACTCGCTGTACAGTCCGCTCGAGTACGGTGCGACGGTGGAGAGTGACGAGGCGACACTCATCGGTGGCAACAGCACCCAGAACACTACCAAGGAATTGTACGTGATCAAAGCGGTGGTGTATGAAATTGGAATTCTGGCCGACGTGCCCGAGAACGAAACGCTCGAAGGAGATGAACCAATCACCCACCAGCAGGTCGATCTGTCCTTCTTCAGCCACGGCGGTAACGATAC                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM628325             [                             ccgGCAGAAAGTTGAGCAAGAAACGAGATCCGAGACACAACGATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCGTATGGTGTGCGGTGGTGGTGGTGTGCTGTGTCGTGGCTGGCCCACTTCCAGCGGAACACCCGAAGGATCATTCCGAGTCCTCCGGCTCCTCGTCCGAGGAGAAAGATCAAGGCTACCCGCTCAACTCGCTGTACAGCCCGCTCGAGTACGGTGCGACGGTGGAGAGTGACGAGGCGACACTCATCGGTGGCAACAGCACCCAGAACACTACCAAGGAGTTGTACGTGATCAAAGCGGTAGTGTACGAAATTGGAATTCTGGCCGACGTGCCCGAGAACGAAACGCTCGAAGGAGATGAACCAATCACCCACCAGCAGGTCGATCTGTCCTTCTTCAGCCACGGCGGCAACGATACGCACCTCGACCTGGGCGACATTCCCGTGCCCATCCAGACGAGCGTGCAGGGGCAGGTGTTCACCGGTATCGCTCCGGTGCATGTCGGCACCGTGCCGACCAAGCTGAGCGATCTGCTGTCCGCCCTGCCGA                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM605903             [                                                                                                                                                                                                                                                                                                                 ccgGGCAACAGCACCCAGAACACTACCAAGGAGTTGTACGTGATCAAAGCGGTGGTGTATGAAATTGGAATTCTGGCCGACGTGCCCGAGAACGAAACGCTCGAAGGAGATGAACCAATCACCCACCAGCAGGTCGATCTGTCCTTCTTCAGCCACGGCGGTAACGATACGCACCTCGATCTGGGCGACATTCCCGTGCCCATCCAGACGAGCGTGCAGGGGCAGGTGTTCACCGGTATCGCCCCGGTGCATGTCGGCACCGTGCCGACCAAGCTGAGCGATCTGCTGTCCGCCCTGCCGATCGCCGGCACGGTGGT GAACA TTTCGCAAACCAACAGCTCGTACGTGGAGGTGCACAAGCACAACATTAGCGATGCGGCCGTCCTGCTGCAGGGGCAGAACGATCTGAGCAGCTTACCGTTTGGCAGCTCCGTGAGCGAACCGCTGGTGCCGGCGAGCGTGGACGAGACGGTTGTTGGACTGACGAACAAGGCGAAAACGCCGGAAGCGGAGAACCATTGAGTGTAGAGTAAAAGGGACAGAAAGGGCAGATGTGTGTGTTTAGCATAAGATATACCTA]




>consensus_6211#0
CCGCGGACGCGTGGGGCAGGTGAACATCCGCCGCAGAAAGTTGAGCAACAAACGAGATCC
GAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCG
TATGGTGTGCGGTGGTGGTGGTGTGCTGTGTCGTGGCTGGCCCACTCCCAGCGGAACACC
CGAATGATCATTCCGAGTCCTCCGGCTCCTCGTCCCAGGAGAAAGATCAAGGCTACCCGC
TCAACTCGCTGTACAGTCCGCTCGAGTACGGTGCGACGGTGGAGAGTGACGAGGCGACAC
TCATCGGTGGCAACAGCACCCAGAACACTACCAAGGAGTTGTACGTGATCAAAGCGGTGG
TGTATGAAATTGGAATTCTGGCCGACGTGCCCGAGAACGAAACGCTCGAAGGAGATGAAC
CAATCACCCACCAGCAGGTCGATCTGTCCTTCTTCAGCCACGGCGGTAACGATACGCACC
TCGATCTGGGCGACATTCCCGTGCCCATCCAGACGAGCGTGCAGGGGCAGGTGTTCACCG
GTATCGCCCCGGTGCATGTCGGCACCGTGCCGACCAAGCTGAGCGATCTGCTGTCCGCCC
TGCCGATCGCCGGCACGGTGGTGGAACATTTTCGCAAACCAACAGCTCGTACGTGGAGGG
GCACAAGCACAACATTAGCGATGCGGCCGTCCTGCTGCAGGGGCAGAACGATCTGAGCAG
CTTACCGTTTGGCAGCTCCGTGAGCGAACCGCTGGTGCCGGCGAGCGTGGACGAGACGGT
TGTTGGACTGACGAACAAGGCGAAAACGCCGGAAGCGGAGAACCATTGAGTGTAGAGTAA
AAGGGACAGAAAGGGCAGATGTGTGTGTTTAGCATAAGATATACCTA

consensusID : consensus_6211#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [GCAGAATCGCCCGAGGTTACGCAAAAGTTGAGCAACAAACGAGATCGAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCGTATGGTAGTGCGGCTGGTGGTGGTGTGCTGTGTCGCTGGCTGGCCCACTACCCAGCGGAACACCCGAATGATACATTACCGAGTACCTACCGGNCTCCTCGTNCCCAGGGAGAAAGATCAAGGCTACACCTGCTCAACTACGACTGTACAGTACCGCTCGAGTNACAGAGTAGCCGTACGCGTTGTGGAGGAAGTNGTACGCACGTGGCNGGACGACTACATCCGCGTGTGTGCGAAACCAGGCCGAACCCCCAAGGAAAACCACTTAACCCAACGCGGACGTATTAGTAAACGGTAGGATCCATATAAGGACCGGGGCTAGGAGGCATTGGGGTTTAAATTATGGGNACGANCACGTCATCNGGTGGNACACAACATATCATNCTTCGGCGGGTCTACCCTGGTAACCCTGGNTTANGTGTNCGCCNCCNGGCAGGGGAAAAAACCGGGGAGCAAGAAAGCCTGGTNGCCTATACCCGGTCGAANAATCGTCTGGGAGGCGAAATTATGGCAAGAAACCGCCCAANGAAGNTTANCCAAAGCTGCTGCCGAAACGCCT]

[+] EMBL AL933132             [GCAGAATCGCCCGAGGTTACGCAAAAGTTGAGCAACAAACGAGATCGAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCGTATGGTAGTGCGGCTGGTGGTGGTGTGCTGTGTCGCTGGCTGGCCCACTACCCAGCGGAACACCCGAATGATACATTACCGAGTACCTACCGGNCTCCTCGTNCCCAGGGAGAAAGATCAAGGCTACACCTGCTCAACTACGACTGTACAGTACCGCTCGAGTNACAGAGTAGCCGTACGCGTTGTGGAGGAAGTNGTACGCACGTGGCNGGACGACTACATCCGCGTGTGTGCGAAACCAGGCCGAACCCCCAAGGAAAACCACTTAACCCAACGCGGACGTATTAGTAAACGGTAGGATCCATATAAGGACCGGGGCTAGGAGGCATTGGGGTTTAAATTATGGGNACGANCACGTCATCNGGTGGNACACAACATATCATNCTTCGGCGGGTCTACCCTGGTAACCCTGGNTTANGTGTNCGCCNCCNGGCAGGGGAAAAAACCGGGGAGCAAGAAAGCCTGGTNGCCTATACCCGGTCGAANAATCGTCTGGGAGGCGAAATTATGGCAAGAAACCGCCCAANGAAGNTTANCCAAAGCTGCTGCCGAAACGCCT]




>consensus_6211#1
GCAGAATCGCCCGAGGTTACGCAAAAGTTGAGCAACAAACGAGATCGAGACACAGCAATG
GTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCGTATGGTAGTGCGGC
TGGTGGTGGTGTGCTGTGTCGCTGGCTGGCCCACTACCCAGCGGAACACCCGAATGATAC
ATTACCGAGTACCTACCGGNCTCCTCGTNCCCAGGGAGAAAGATCAAGGCTACACCTGCT
CAACTACGACTGTACAGTACCGCTCGAGTNACAGAGTAGCCGTACGCGTTGTGGAGGAAG
TNGTACGCACGTGGCNGGACGACTACATCCGCGTGTGTGCGAAACCAGGCCGAACCCCCA
AGGAAAACCACTTAACCCAACGCGGACGTATTAGTAAACGGTAGGATCCATATAAGGACC
GGGGCTAGGAGGCATTGGGGTTTAAATTATGGGNACGANCACGTCATCNGGTGGNACACA
ACATATCATNCTTCGGCGGGTCTACCCTGGTAACCCTGGNTTANGTGTNCGCCNCCNGGC
AGGGGAAAAAACCGGGGAGCAAGAAAGCCTGGTNGCCTATACCCGGTCGAANAATCGTCT
GGGAGGCGAAATTATGGCAAGAAACCGCCCAANGAAGNTTANCCAAAGCTGCTGCCGAAA
CGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6211#0      CCGCGGACGCGTGGGGCAGGTGAACATCCGCCGCAGAAAGTTGAGCAACAAACGAGATCC 60
consensus_6211#1      ----------GCAGAATCGCCCGAGGTT--ACGCA-AAAGTTGAGCAACAAACGAGATC- 46
                                *  *    *    *  *    **** *********************** 

consensus_6211#0      GAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCG 120
consensus_6211#1      GAGACACAGCAATGGTTGTTACGAAAGGAGCGACGGGTTGGCAGAAGTTGGCCGTTACCG 106
                      ************************************************************

consensus_6211#0      TATGGT-GTGCGG-TGGTGGTGGTGTGCTGTGTCG-TGGCTGGCCCACT-CCCAGCGGAA 176
consensus_6211#1      TATGGTAGTGCGGCTGGTGGTGGTGTGCTGTGTCGCTGGCTGGCCCACTACCCAGCGGAA 166
                      ****** ****** ********************* ************* **********

consensus_6211#0      CACCCGAATGAT-CATT-CCGAGTCCT---CCGGCTCCTCGTCCC--AGGAGAAAGATCA 229
consensus_6211#1      CACCCGAATGATACATTACCGAGTACCTACCGGNCTCCTCGTNCCCAGGGAGAAAGATCA 226
                      ************ **** ****** *    * * ******** **   ************

consensus_6211#0      AGGCTAC--CCGCTCAACTC--GCTGTACAGT-CCGCTCGAGTA-CGGTGCGACGGTGGA 283
consensus_6211#1      AGGCTACACCTGCTCAACTACGACTGTACAGTACCGCTCGAGTNACAGAGTAGCCGTACG 286
                      *******  * ********    ********* **********  * * *   * **   

consensus_6211#0      GAGTGACGAGGCGACACT-CATCGGTGGCAACAGCACCCAGAACACTACCAAGGAGTTGT 342
consensus_6211#1      CGTTGTGGAGGAAGTNGTACGCACGTGGCNGGACGACT---ACATCCGCGTGTGTGCGAA 343
                         **  ****      * *    *****   *  **    *   *  *    * *    

consensus_6211#0      ACGTGATCAAAGCGGTGGTGTATGAAATTGGAATTCTGGCCGACGTGCCCGAGAACGAAA 402
consensus_6211#1      ACCAGGCCGAACCCCCAAGGAAAACCACTTAACCCAACGCGGACGTATTAGTAAACGGTA 403
                      **  *  * ** *      * *    * *  *      ** *****    *  ****  *

consensus_6211#0      CGCTCGAAGGAGATGAACCAATCACCCACCAGCAGGTCGATCTGTCCTTCTTCAGCCACG 462
consensus_6211#1      GGATCCA--TATAAGGACCGGG-GCTAGGAGGCATTGGGGTTTAAATTATGGGNACGANC 460
                       * ** *   * * * ***     *      ***    * * *    *       * *  

consensus_6211#0      GCGGTAACGATACGCACCTCGATCTGGGCGACATTCCCGTGCCCATCCAGACGAGCGTGC 522
consensus_6211#1      ACGTCATCNG-GTGGNACACAACATATCATNCTTCGGCGGGTCTACCCTGGTAACCCTG- 518
                       **  * *     *   * * *  *      * *   ** * * * ** *   * * ** 

consensus_6211#0      AGGGGCAGGTGTTCACCGGTATCGCCCCGGTGCATGTCGGCACCGTGCCGACCAAGCTGA 582
consensus_6211#1      --GNTTANGTGTNCGCCNCCNG-GCAGGGGAAAAAACCGG----GGAGCAAGAAAGCCTG 571
                        *   * **** * **      **   **   *   ***    *   * *  ****   

consensus_6211#0      GCGATCTGCTGTCCGCCCTGCCGATCGCCGGCACGGTGGTGGAACATTTTCGCAAACCAA 642
consensus_6211#1      GTNGCCTA-TACCCGGTCGAANAATCGTCTG---GGAGGCGAAA--TTATGGCAAGA-AA 624
                      *    **  *  ***  *     **** * *   ** ** * **  ** * ****   **

consensus_6211#0      CAGCTCGTACGTGGAGGGGCACAAGCACAACATTAGCGATGCGGCCGTCCTGCTGCAGGG 702
consensus_6211#1      CCGCCCA-ANGAAGNTTANCCAAAGC----TGCTGCCGAAACGCCT-------------- 665
                      * ** *  * *  *     *  ****       *  ***  ** *               

consensus_6211#0      GCAGAACGATCTGAGCAGCTTACCGTTTGGCAGCTCCGTGAGCGAACCGCTGGTGCCGGC 762
consensus_6211#1      ------------------------------------------------------------
                                                                                  

consensus_6211#0      GAGCGTGGACGAGACGGTTGTTGGACTGACGAACAAGGCGAAAACGCCGGAAGCGGAGAA 822
consensus_6211#1      ------------------------------------------------------------
                                                                                  

consensus_6211#0      CCATTGAGTGTAGAGTAAAAGGGACAGAAAGGGCAGATGTGTGTGTTTAGCATAAGATAT 882
consensus_6211#1      ------------------------------------------------------------
                                                                                  

consensus_6211#0      ACCTA 887
consensus_6211#1      -----