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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 988 fasta sequence
[AGGACGCACTGGAATCACCGTTTGTCGATGATACGTTCGCGCCAACCGGAGGTCGAAGTAGAAAGTTACATCTGGTCGACGACGCTCTCGATGACGAANAAGGGTTAGATGAGGTCGATGATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACNAGTGTAACGGACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATTCCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAGAGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTC-GGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATCGCTTCATACAG-AAGGATGCAAACGTGGCGCTAGACAAGCT-GGTGACGTACATCCCAACGCCACACACCGTGCGGGCGATATCGAACCGGGGCACCATGTAAGTGGCTGTAGAGCGACCAGTGATGCTTCCGGTTGTGTC--TCCACCGCAATCCACTGGTGCGTACGGCTACGGCCCGGCTGCTCGTCTGTATTTGCGTCGTGGCAGGACTCGATGCCATTCTGGGGACCACGGCAAACACACGAACGCGCAAAACCATCCTTACGATGTTGGCCAAGTTTTTAACGGATAAAAATCTAGAAACCAGGAAGTTTGGTGAACGGTTATATCGCATGTTGCGCAAGCACAAGTTTTTTGACGAGTATTTCTACAAGGATATGGATAACAACT]
[+] EMBL BX624828 [AGGACGCACTGGAATCACCGTTTGTCGATGATACGTTCGCGCCAACCGGAGGTCGAAGTAGAAAGTTACATCTGGTCGACGACGCTCTCGATGACGAANAAGGGTTAGATGAGGTCGATGATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACNAGTGTAACGGACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATTCCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAGAGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTCNNGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGACGANATGGTCGACATACTGCTGTGCNAGACGGCCGACCCGAATCGCTTCATACAG AAGGATGCAAACGTGGCGCTAGACAAGCT GGTGACGTACATCCCNACGNCACACACCGTGCGGGCGATATCGAACCGGNGCACCATGTAAGTGGCTGTAGAGCGACCAGTGATGCTTNCGGTTGTGTC TCCACCGC ]
[+] EMBL BX624954 [ GCCGTTCGTGCTGGTACCGGTACGAAAGAGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTC GGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATCGCTTCATACAG AAGGATGCAAACGTGGCGCTAGACAAGCT GGTGACGTACATCCCAACGCCACACACCGTGCGGGCGATATCGAACCGGGGCACCATGTAAGTGGCTGTAGAGCGACCAGTGATGCTTCCGGTTGTGTCTGTCCACCGCAATCCACTGGTGCGTACGGCTACGGCCCGGCTGCTCGTCTGTATTTGCGTCGTGGCAGGACTCGATGCCATTCTGGGGACCACGGCAAACACACGAACGCGCAAAACCATCCTTACGATGTTGGCCAAGTTTTTAACGGATAAAAATCTAGAAACCAGGAAGTTTGGTGAACGGTTATATCGCATGTTGCGCAAGCACAAGTTTTTTGACGAGTATTTCTACAAGGATATGGATAACAACT]
[+] EMBL BX619582 [ CCGGTACGAAAGAGGGGCCGGTCAGCNTTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTC GGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATCGCTTCATACAGAAAGGATGCAAACGTGGCGCTAGACAAGCTGGGTGACGTACATCCCAACGCCACACACCGTGCGGGCGATATCGAACCGGGGCACCATGTAAGTGGCTGTAGAGCGACCAGTGATGCTTCCGGTNNTGTC Tg ]
consensusID : consensus_6213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 776 fasta sequence
[ATCCCCCGAGGTTAATGTCGATGATACGTTCGCGCCAACTGGAGGTCGAAGTAGAAAGTTACATCTGGTCGACGACGCTCTCGATGACGAAGAAGGGTTAGATGAGGTCGATGATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACGAGTGTAACGGACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATTCCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAGAGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTCGGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATCGCTTCATACAGAAGGATGCAAACGTGGCGCTAGACAAGCTGGTGACGTACATCCCAACGCCACACACCGTGCGGGCGATATCGAAACCGGGGCACCATCCACCGCAATCCACTGGTGCGTACGGCTACGGCCCGGCTGCTCGTCTGTATTTGCGTCGTGGCAGGACTCGATGCCATTCTGGGG]
[+] EMBL AL933128 [ATCCCCCGAGGTTAATGTCGATGATACGTTCGCGCCAACTGGAGGTCGAAGTAGAAAGTTACATCTGGTCGACGACGCTCTCGATGACGAAGAAGGGTTAGATGAGGTCGATGATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACGAGTGTAACGGACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATTCCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAGAGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTCGGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATCGCTTCATACAGAAGGATGCAAACGTGGCGCTAGACAAGCTGGTGACGTACATCCCAACGCCACACACCGTGC ]
[+] EMBL BX626353 [ TGACGAAGAAGGGTTAGATGAGGTCGATGATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACGAGTGTAACGGACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATTCCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAGAGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTTGCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGGAAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGGCACTGTGCCGTTCGGCGTGTCAGGTGTCGGGCGAATTGTTTCGGCAGGCCAAGTCGACGAAACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATCGCTTCATACAGAAGGATGCAAACGTGGCGCTAGACAAGCTGGTGACGTACATCCCAACGCCACACACCGTGCGGGCGATATCGAAACCGGGGCACCATCCACCGCAATCCACTGGTGCGTACGGCTACGGCCCGGCTGCTCGTCTGTATTTGCGTCGTGGCAGGACTCGATGCCATTCTGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6213#0 AGGACGCACTGGAATCACCGTTTGTCGATGATACGTTCGCGCCAACCGGAGGTCGAAGTA 60
consensus_6213#1 ---ATCCCCCGAGGTTAA----TGTCGATGATACGTTCGCGCCAACTGGAGGTCGAAGTA 53
* * * * * * ************************ *************
consensus_6213#0 GAAAGTTACATCTGGTCGACGACGCTCTCGATGACGAANAAGGGTTAGATGAGGTCGATG 120
consensus_6213#1 GAAAGTTACATCTGGTCGACGACGCTCTCGATGACGAAGAAGGGTTAGATGAGGTCGATG 113
************************************** *********************
consensus_6213#0 ATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACNAGTGTAACG 180
consensus_6213#1 ATGAATCGGACGTCGAGTCCAGCGACGAACAGCAGAACAATGACCGTGACGAGTGTAACG 173
************************************************** *********
consensus_6213#0 GACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATT 240
consensus_6213#1 GACAGCTGGATCTTGACGATGAAAACGAAGAAGACAATGATGAGGAGTCAGTTGGCGATT 233
************************************************************
consensus_6213#0 CCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAG 300
consensus_6213#1 CCTTCGGGCGGAGACTAGGACATGGAACGGAAGCCGTTCGTGCTGGTACCGGTACGAAAG 293
************************************************************
consensus_6213#0 AGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTT 360
consensus_6213#1 AGGGGCCGGTCAGCATTTCCGGAATTGTGGATAAGCTCCAGGACAACGTGTGGGAGGTTT 353
************************************************************
consensus_6213#0 GCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGG 420
consensus_6213#1 GCCTGGAGGGCATCTGGGACCTAATGGATACCGCCAGTCGGATCGATTGGAAGGCTCAGG 413
************************************************************
consensus_6213#0 AAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGG 480
consensus_6213#1 AAAAGTACATCACCGTCATCAACCGGAAGTTGATCGAGTTTCTGAAATCCCCACGAACGG 473
************************************************************
consensus_6213#0 CACTGTGCCGTTCGGCGTGTCAGGTGTCGGGCGAATTGTTTCGGCAGGCCAAGTCGACGA 540
consensus_6213#1 CACTGTGCCGTTCGGCGTGTCAGGTGTCGGGCGAATTGTTTCGGCAGGCCAAGTCGACGA 533
************************************************************
consensus_6213#0 AACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATC 600
consensus_6213#1 AACGGCCAGAGTTTGATGAAATGGTCGACATACTGCTGTGCAAGACGGCCGACCCGAATC 593
************************************************************
consensus_6213#0 GCTTCATACAGAAGGATGCAAACGTGGCGCTAGACAAGCTGGTGACGTACATCCCAACGC 660
consensus_6213#1 GCTTCATACAGAAGGATGCAAACGTGGCGCTAGACAAGCTGGTGACGTACATCCCAACGC 653
************************************************************
consensus_6213#0 CACACACCGTGCGGGCGATATCGAA-CCGGGGCACCATGTAAGTGGCTGTAGAGCGACCA 719
consensus_6213#1 CACACACCGTGCGGGCGATATCGAAACCGGGGCACCAT---------------------- 691
************************* ************
consensus_6213#0 GTGATGCTTCCGGTTGTGTCTCCACCGCAATCCACTGGTGCGTACGGCTACGGCCCGGCT 779
consensus_6213#1 ---------------------CCACCGCAATCCACTGGTGCGTACGGCTACGGCCCGGCT 730
***************************************
consensus_6213#0 GCTCGTCTGTATTTGCGTCGTGGCAGGACTCGATGCCATTCTGGGGACCACGGCAAACAC 839
consensus_6213#1 GCTCGTCTGTATTTGCGTCGTGGCAGGACTCGATGCCATTCTGGGG-------------- 776
**********************************************
consensus_6213#0 ACGAACGCGCAAAACCATCCTTACGATGTTGGCCAAGTTTTTAACGGATAAAAATCTAGA 899
consensus_6213#1 ------------------------------------------------------------
consensus_6213#0 AACCAGGAAGTTTGGTGAACGGTTATATCGCATGTTGCGCAAGCACAAGTTTTTTGACGA 959
consensus_6213#1 ------------------------------------------------------------
consensus_6213#0 GTATTTCTACAAGGATATGGATAACAACT 988
consensus_6213#1 -----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||