cluster # 6222

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Anopheles gambiae
cluster # 6222 cluster # 6222 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6222#0 length = 917 sequences # 3

consensus_6222#1 length = 843 sequences # 2

consensusID : consensus_6222#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 917
fasta sequence

                              [CCGTACAAGTTGTGTTTTGCTCGAGAGAG-AACTTTCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAGGAAGATGTTCACCTGCCCGACTATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTGCAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTCGGGCTGGAACTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACGTCCGTCCTGGTGGATGGGAAGTTTTTCATCCACGACGACGGCATGGTGGTGGAAGTGGGTGACACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACGCTGTTCCACAGCAATTTCCGTCGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAGAACAACTATTGCTTCTCGCAGTGCCTGGTAGGCGATCAGCATGTCGCCCACGAAGAGGTTACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTACGTAAAGTCGCGCCTGTTTCAAGTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCA-CGACCTACCTTGCCCACAACGGTGTGGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAGGTGCTCGAGCTGGGCCAGCGTTACCTGGATGTTATCGATTTCGACAGCTTCCTGGAGGAGTGGAACTAGCAGCGAAA]

[+] EMBL BM577234             [CCGTACAAGTTGTGTTTTGCTCGAGAGAGCAACTTTCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAGGAAGATGTTCACCTGCCCGACTATTTGGTGTTTACGAAACAGTTTGCGCTGCACGTGCAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTCGGGCTGGAACTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACGTCCGTCCTGGTGGATGGGAAGTTTTTCATCCACGACGACGGCATGGTGGTGGAAGTGGGTGACACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACGCTGTTTCACAGCAATTTCCGTCGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAAAACAACTATTGCTTCTCGCAGTGCCTGGTAGGCGATCAGCAAGTCGCCCACGAAGAAGTTGCCCACCTGAAGCAGCTCCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATG                                                                                                                                                                                                                                      ]
[+] EMBL CNS09NBQ             [              TTTTGCTCGAGAGAG AACTTTCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAGGAAGATGTTCATCTGCCCGAATATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTGCAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTCGGGCTGGAGCTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACCTCCGTCCTGGTGGATGGGAAATTTTTCATCCACGACGACGGCATGGTGGTGGAAGAGGGTGACACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACGCTGTTCCACAGCAATTTCCGTCGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAGAACAACTATTGCTTCTCGCAGTGCCTGGTAGGCGATCAGCATGTCGCCCACGAAGAGGTTACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTGGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTACGTAAAGTCGCGCCTGTTTCAAGTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCA CGACCTACCTTGCCCACAACGGTGTGGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAGGTGCTCGAGCTGGGCCAGCGTTACCTGGATGTTATCGATTTCGACAGCTTCCTGGAGGAGTGGAACTAGCAGCGAAA]
[+] EMBL BX627076             [                                   TCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATACACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGNGNTTAGCATTAGTGCGCCTCGCCTGGGCCCAGGAAGATGTTCACCTGCCCGACTATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTGCAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGAGACAGTCCGCTGATCGAGACGTTCGGGCTGGAACTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACGTCCGTCCTGGTGGATGGGAAGTTTTTCATCCACGGCGACGGCATGGTGGTGGAAGTGGGTGACACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACGCTGTTCCACAGCAATTTCCGTCGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAGAACAACTATTGCTTCTCGCAGTGCCTGGTAGGCGATCAGCATGTCGCCCACGAAGANGGTACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTACCTAAAGTCGCGCCTGTTTCAAGTGGA GCACTGCGACCGCTGGTCAACAGTGTCGTCACCAACCTACCTTGCAC CATGGGTGTCGGCTTCCGTATGTATAC CTGC                                                                                           ]




>consensus_6222#0
CCGTACAAGTTGTGTTTTGCTCGAGAGAGAACTTTCTCGTTCGTAAGCGTTGCACGGACA
AACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACG
ATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAG
GAAGATGTTCACCTGCCCGACTATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTGCAG
GTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTC
GGGCTGGAACTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGA
CAGCTGCTCGTCAACACGTCCGTCCTGGTGGATGGGAAGTTTTTCATCCACGACGACGGC
ATGGTGGTGGAAGTGGGTGACACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACG
CTGTTCCACAGCAATTTCCGTCGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAG
AACAACTATTGCTTCTCGCAGTGCCTGGTAGGCGATCAGCATGTCGCCCACGAAGAGGTT
ACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCC
GAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTAC
GTAAAGTCGCGCCTGTTTCAAGTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCACG
ACCTACCTTGCCCACAACGGTGTGGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAG
GTGCTCGAGCTGGGCCAGCGTTACCTGGATGTTATCGATTTCGACAGCTTCCTGGAGGAG
TGGAACTAGCAGCGAAA

consensusID : consensus_6222#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 843
fasta sequence

                              [CGCGCGCGCCCTTTCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAGGAAGATGTTCATCTGCCCGAATATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTACAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTCGGGCTGGAGCTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACCTCCGTCCTGGTGGA-TGG---GA-AATTTTTCATCCACGACGACGGCATGGTGGTG-G-A-AG-AGGGTGACACGATTCGCTATCGCTTCA-TGGTTACGCACAAGAAAACGCTGTTCCAC-AGCAATTTCCGTCGGATTCTCGTAACA-GATCA-TCTA-TTCTATCGCCCGAAGAACAA-C-TATTGCTTCTCGCAGTGCCTGGTAGGCGA-TCA-GCATGTCGCCCACGAAGAGGTTACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTACGTAA-AGTCGCGCCTGTTTCAAGTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCACGACCTACCTTGCCCACAACGGTGTCGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAGGTGCTCGAGCTGGGCCAACCGTAC]

[+] EMBL CNS09BYX             [CGCGCGCGCCCTTTCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAGGAAGATGTTCATCTGCCCGAATATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTACAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTCGGGCTGGAGCTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACCTCCGTCCTGGTGGA TGG   GA AATTTTTCATCCACGACGACGGCATGGTGGTG G A AG AGGGTGACACGATTCGCTATCGCTTCA TGGTTACGCACAAGAAAACGCTGTTCCAC AGCAATTTCCGTCGGATTCTCGTAACA GATCA TCTA TTCTATCGCCCGAAGAACAA C TATTGCTTCTCGCAGTGCCTGGTAGGCGA TCA GCATGTCGCCCACGAAGAGGTTACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTACGTAA AGTCGCGCCTGTTTCAAGTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCACGACCTACCTTGCCCACAACGGTGTCGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAGGTGCTCGAGCTGGGCCAACCGTAC]
[+] EMBL AL933034             [  gtttaacaCTTTCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAGGAAGATGTTCATCTGCCCGAATATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTGCAGGTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTCGGGCTGGAGCTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACCTCCGTCCTGGTGGACTGGCCACACACTTTTTCATCCACGACGACGGCATGGTGGTGNGCACAGCAGGGTGACACGATTCGCTATCGCTTCACTGGTTACGCACAAGAAAACGCTGTTCCACGAGCAATTTCCGTCGGATTCTCGTAACACGATCAGTCTAGTTCTATCGCCCGAAGAACAAGCGTATTGCTTCTCGCAGTGCCTGGTAGGCGACTCAGGCATGTCGCCCACGAAGAGGTTACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTACGTAACAGTCGCGCC                                                                                                                                   ]




>consensus_6222#1
CGCGCGCGCCCTTTCTCGTTCGTAAGCGTTGCACGGACAAACTTAAACCCCGACTCATTC
ACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACGATGCGTTCGCTGGTGCATTTT
ATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAGGAAGATGTTCATCTGCCCGAA
TATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTACAGGTTCGCGAACCTTCCGGCATC
ATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTCGGGCTGGAGCTGTACGTTGGC
CGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGACAGCTGCTCGTCAACACCTCC
GTCCTGGTGGATGGGAAATTTTTCATCCACGACGACGGCATGGTGGTGGAAGAGGGTGAC
ACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACGCTGTTCCACAGCAATTTCCGT
CGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAGAACAACTATTGCTTCTCGCAG
TGCCTGGTAGGCGATCAGCATGTCGCCCACGAAGAGGTTACCCACCTGAAGCTGCTGCTG
GAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCCGAGCATCTGTTCTTCCCGCTG
GAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTACGTAAAGTCGCGCCTGTTTCAA
GTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCACGACCTACCTTGCCCACAACGGT
GTCGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAGGTGCTCGAGCTGGGCCAACCG
TAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6222#0      CCGTACAAGTTGTGTTTTGCTCGAGAGAGAACTTTCTCGTTCGTAAGCGTTGCACGGACA 60
consensus_6222#1      ---------------------CGCGCGCGCCCTTTCTCGTTCGTAAGCGTTGCACGGACA 39
                                           ** * * *  *****************************

consensus_6222#0      AACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACG 120
consensus_6222#1      AACTTAAACCCCGACTCATTCACAGATAGTGATCTCAGCTCGCTCGCAGTACAGTTTACG 99
                      ************************************************************

consensus_6222#0      ATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAG 180
consensus_6222#1      ATGCGTTCGCTGGTGCATTTTATATTGAGCTTAGCATTAATGCGCCTCGGCTGGGCCCAG 159
                      ************************************************************

consensus_6222#0      GAAGATGTTCACCTGCCCGACTATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTGCAG 240
consensus_6222#1      GAAGATGTTCATCTGCCCGAATATTTGGTGTTTACGAAACAGTTTGCGGTGCACGTACAG 219
                      *********** ******** *********************************** ***

consensus_6222#0      GTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTC 300
consensus_6222#1      GTTCGCGAACCTTCCGGCATCATGGTCTGGACCCGGGACAGTCCGCTGATCGAGACGTTC 279
                      ************************************************************

consensus_6222#0      GGGCTGGAACTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGA 360
consensus_6222#1      GGGCTGGAGCTGTACGTTGGCCGGGGTAATCACAGCACCCGGGGACCGATCTGGGACAGA 339
                      ******** ***************************************************

consensus_6222#0      CAGCTGCTCGTCAACACGTCCGTCCTGGTGGATGGGAAGTTTTTCATCCACGACGACGGC 420
consensus_6222#1      CAGCTGCTCGTCAACACCTCCGTCCTGGTGGATGGGAAATTTTTCATCCACGACGACGGC 399
                      ***************** ******************** *********************

consensus_6222#0      ATGGTGGTGGAAGTGGGTGACACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACG 480
consensus_6222#1      ATGGTGGTGGAAGAGGGTGACACGATTCGCTATCGCTTCATGGTTACGCACAAGAAAACG 459
                      ************* **********************************************

consensus_6222#0      CTGTTCCACAGCAATTTCCGTCGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAG 540
consensus_6222#1      CTGTTCCACAGCAATTTCCGTCGGATTCTCGTAACAGATCATCTATTCTATCGCCCGAAG 519
                      ************************************************************

consensus_6222#0      AACAACTATTGCTTCTCGCAGTGCCTGGTAGGCGATCAGCATGTCGCCCACGAAGAGGTT 600
consensus_6222#1      AACAACTATTGCTTCTCGCAGTGCCTGGTAGGCGATCAGCATGTCGCCCACGAAGAGGTT 579
                      ************************************************************

consensus_6222#0      ACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCC 660
consensus_6222#1      ACCCACCTGAAGCTGCTGCTGGAGCAGAAGATACTGCAGTGCGTCGGTACGCAAGCGTCC 639
                      ************************************************************

consensus_6222#0      GAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTAC 720
consensus_6222#1      GAGCATCTGTTCTTCCCGCTGGAAAATGCCTCGAAGCTAGTGGCTGACGCCGAGCTGTAC 699
                      ************************************************************

consensus_6222#0      GTAAAGTCGCGCCTGTTTCAAGTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCACG 780
consensus_6222#1      GTAAAGTCGCGCCTGTTTCAAGTGGAGGCACTGCGACCGCTGGTCAACAGTGTCGTCACG 759
                      ************************************************************

consensus_6222#0      ACCTACCTTGCCCACAACGGTGTGGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAG 840
consensus_6222#1      ACCTACCTTGCCCACAACGGTGTCGGCTTCCGTATGTATACACTGCTCGATAAGTTTAAG 819
                      *********************** ************************************

consensus_6222#0      GTGCTCGAGCTGGGCCAGCGTTACCTGGATGTTATCGATTTCGACAGCTTCCTGGAGGAG 900
consensus_6222#1      GTGCTCGAGCTGGGCCAACCGTAC------------------------------------ 843
                      ***************** *  ***                                    

consensus_6222#0      TGGAACTAGCAGCGAAA 917
consensus_6222#1      -----------------