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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1141 fasta sequence
[CCGCTCTCTCGTATGCACAACACTGCCGGGTGCTGGTTTTTTGTTTGTCCAGTTAGAAACTTCAGTATTTGTTTCGACATTAGTCCTTTCTTGGTGCTTTTCCACTCTATTTTCGGTGGCAGCTCAGTGTTACTAGCAGGCTTAAAGTGTAGTCAAATTACGAACATTCCGGTGCTCACCCAGTGCCAGGCCACTGGGAACTGATATATAAACCATCGCTAAATAAAGATGGTGTTTAGAAGCTGTAGGCAACATTTCTTTAGGAAGCTTCCATTTCCCAACTATCCCGAGAGACGTATTTTTCTATTTCTTTCATAAATCACTGTCCATGTTTTTCCTTGCAAATTTTCCCTCCATGCTTTTTAGGATAACATTTTTCGAATTAAATTATCTCTAGCTAGTCTTGCTATTGCCTCAAACAAACGTGATGATGAGAGAGGAATGCTGATTTTAGGAAGCTTTTTCGCTGCCTACTTGATCGCTGCAACGTTGGCAAGCTTACGGTTTGGGTGGCGTTTAGGGAGGTTTAGGAGCCGCATGGTAGATAGAAACTTCAGTTCCTGCCCTTTCTGGTGTAGTCAACATGGATTTTACGTACATCACAAGCATAATGTTAAATGATTTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTATTTTTTCTAGTCCAATGAACAACGAATACACATTTCATTTTCTATTTCCCTGTTCTAGAAGCTGTTTAAACGCCCTCTAATGCAGTACTGTATAAATCTTGCTTACTGATCGTACATACAATACAAACTCTCTCACACACAATCGATTCAAGTCCGGTTCCGACCCTTTCCGCAAAACAAAACAAAACAAAAAACACTCTTAAGGAAAAAGCTCGTGTAAACCCNATCNGATGGACGAATCAATGAGAGGTAACCAGGCAAAGCTGTAANATNNAGCAAGACCCATCCCCCATCCTCNATGTTGNCGGGTAAATTGAAGAATTGNAACTCCGCCACCGGGGCTTCTTAATNCGNTNACNTTTCCCACCAGTTCTTTTTGNTTTAAGCCATTCCTTTTTTTTTCTCTCNNGCTTTGGAGAAANGATCAGCACACTCNGTACGCACTGTCTTGCTACCTGTACACCTGTNCCAAAGCAACCACTT]
[+] EMBL BM640563 [CCGCTCTCTCGTATGCACAACACTGCCGGGTGCTGGTTTTTTGTTTGTCCAGTTAGAAACTTCAGTATTTGTTTCGACATTAGTCCTTTCTTGGTGCTTTTCCACTCTATTTTCGGTGGCAGCTCAGTGTTACTAGCAGGCTTAAAGTGTAGTCAAATTACGAACATTCCGGTGCTCACCCAGTGCCAGGCCACTGGGAACTGATATATAAACCATCGCTAAATAAAGATGGTGTTTAGAAGCTGTAGGCAACATTTCTTTAGGAAGCTTCCATTTCCCAACTATCCCGAGAGACGTATTTTTCTATTTCTTTCATAAATCACTGTCCATGTTTTTCCTTGCAAATTTTCCCTCCATGCTTTTTAGGATAACATTTTTCGAATTAAATTATCTCTAGCTAGTCTTGCTATTGCCTCAAACAAACGTGATGATGAGAGAGGAATGCTGATTTTAGGAAGCTTTTTCGCTGCCTACTTGATCGCTGCAACGTTGGCAAGCTTACGGTTTGGGTGGCGTTTAGGGAGGTTTAGGAGCCGCATGGTAGATAGAAACTTCAGTTCCTGCCCTTTCTGGTGTAGTCAACATGGATTTTACGTACATCACAAGCATAATGTTAAATGATTTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTATTTTTTCTAGTCCAATGAACAACGAATAC ]
[+] EMBL BX619089 [ GCATGGTAGATAGAAACTTCAGTTCCTGCCCTTTCTGGTGTAGTCAACATGGATTTTACGTACATCACAAGCATAATGTTAAATGATTTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTATTTTTTCTAGTCCAATGAACAACGAATACACATTTCATTTTCTATTTCCCTGTTCTAGAAGCTGTTTAAACGCCCTCTAATGCAGTACTGTATAAATCTTGCTTACTGATCGTACATACAATACAAACTCTCTCACACACAATCGATTCAAGTCCGGTTCCGACCCTTTCCGCAAAACAAAACAAAACAAAAAACACTCTTAAGGAAAAAGCTCGTGTAAACCCNATCNGATGGACGAATCAATGAGAGGTAACCAGGCAAAGCTGTAANATNNAGCAAGACCCATCCCCCATCCTCNATGTTGNCGGGTAAATTGAAGAATTGNAACTCCGCCACCGGGGCTTCTTAATNCGNTNACNTTTCCCACCAGTTCTTTTTGNTTTAAGCCATTCCTTTTTTTTTCTCTCNNGCTTTGGAGAAANGATCAGCACACTCNGTACGCACTGTCTTGCTACCTGTACACCTGTNCCAAAGCAACCACTT]
consensusID : consensus_6240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 702 fasta sequence
[CCGATTTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTATTTTTTCTAGTCCAATGAACAACGAATACACATTTCATTTTCTATTTCCCTGTTCTAGAAGCTGTTTAAACGCCCTCTAATGCAGTACTGTATAAATCTTGCTTACTGATCGTACATACAATACAAACTCTCTCACACACAATCGATTCAAGTCCGGTTCCGACCCTTTCCGCAAAACAAAACAAAACAAAAAACACTCTTAAGGAAAAGCTCGTGTAAACCCATCGATGGACGAATCAATGAGAGGTAACAGGCAAAGCTGTAAATTAGAAGACAATCCCCATTTCATGTGCGGTAATGAGATGAACTCGCACGGCTCTTATCGTACTTCCACAGTCTTTGTTTAGCATCCTTTTTTTCTCTCAAGCTTTGGAGAAAGGATCAGCACAATCTGTACGCACTGTTTTGCTACCTGTACACCTGTTCAAAGCACCACTTTCTTATACATATATCGGCAAAATACGATATAGCTTTATGTAAGACAACACCACTCCCTGTAGAACTGTAACAACATCTACATCTTTCTGCCTATTTTTAAAACAATGCAGTCACATAGGGTACATTCTTGAAGAGCAAATCGATCAGTGGAGGAATAATACAGTGCTGCAATTATAGGGTGAAGTAACTCTAACTTTATTTAAAAAATACTTTCTTTCTATAC]
[+] EMBL BM627397 [CCGATTTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTATTTTTTCTAGTCCAATGAACAACGAATACACATTTCATTTTCTATTTCCCTGTTCTAGAAGCTGTTTAAACGCCCTCTAATGCAGTACTGTATAAATCTTGCTTACTGATCGTACATACAATACAAACTCTCTCACACACAATCGATTCAAGTCCGGTTCCGACCCTTTCCGCAAAACAAAACAAAACAAAAAACACTCTTAAGGAAAAGCTCGTGTAAACCCATCGATGGACGAATCAATGAGAGGTAACAGGCAAAGCTGTAAATTAGAAGACAATCCCCATTTCATGTGCGGTAATGAGATGAACTCGCACGGCTCTTATCGTACTTCCACAGTCTTTGTTTAGCATCCTTTTTTTCTCTCAAGCTTTGGAGAAAGGATCAGCACAATCTGTACGCACTGTTTTGCTACCTGTACACCTGTTCAAAGCACCACTTTCTTATACATATATCGGCAAAATACGATATAGCTTTATGTAAGACAACACCACTCCCTGTAGAACTGTAACAACATCTACATCTTTCTGCCTATTTTTAAAACAATGCAG ]
[+] EMBL BX620236 [ ACTCTTAAGGAAAAGCTCGTGTAAACCCATCGATGGACGAATCAATGAGAGGTAACAGGCAAAGCTGTAAATTAGAAGACAATCCCCATTTCATGTGCGGTAATGAGATGAACTCGCTCGGCTCTTATCGTACTTCCACAGTCTTTGTTTAGCATCCTCTTTTTCTCTCAAGCTTTGGAGAAAGGATCAGCACAATCTGTACGCACTGTTTTGCTACCTGTACACCTGTTCAAAGCACCACTTTCTTATACATATATCGGCAAAATACGATATAGCTTTATGTAAGACAACACCACTCCCTGTAGAACTGTAACTACATCTACATCTTTCTGCCTATTTTTACAACAATGCAGTCACATAGGGTACATTCTTGAAGAGCAAATCGATCAGTGGAGGAATAATACAGTGCTGCAATTATAGGGTGAAGTAACTCTAACTTTATTTAAAAAATACTTTCTTTCTATAC]
consensusID : consensus_6240#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[GAATTGCCCGAGGTTATTTCTAGTCAATGAACAACGAATACACATTTCATTTTCTATTTCCCTGTTCTAGAAGCTGTTCAAACGCCCTCTAATGCAGTACTGTAACGAGGCGTACAAAACAGGCTTAGATAAAACGCCCTCTAATGCAGTACTGTAAAAATCTTGCTTACTGATCGTACATACAATACAAACTCTCTCACACACAATTGATTCAAGTCCGGTTCCGACCCTTTCCGCAAAACCAAAAACAAAAACAAAAAACACTCTTTAAGGAAAAAGCTCGTGTAAACCCATCGATGGACGAATCACATGACGAGGTAACAGGCAAAGCTGTAACATTANGAAGACAAATCCCCATTTCATGTGCGGTAAATTGAGATGAACTCGCTCGGCTCTTAATCGTACCTTCCACAGACTTAGTNTAGCCATTCCTCTTTTTCTCTCAAGCTTTGGAGACAAGGATCCAGACAATCTGGTACGCACTTGTNATAGCGTACCTGGTACACCTGTTCAAAGCACCATTTCTTATACCAGTATATCGGGCCAACATACGCATTCTAGCCTTTATGTAAGACANCAACCACTTCCCTGGTAGACACTGTGAACCTACATCTACAATCNTTATCTGGCTTATATTACAACCAAATGCCAGTCACCTTAGCGGTACAT]
[+] EMBL AL692899 [GAATTGCCCGAGGTTATTTCTAGTCAATGAACAACGAATACACATTTCATTTTCTATTTCCCTGTTCTAGAAGCTGTTCAAACGCCCTCTAATGCAGTACTGTAACGAGGCGTACAAAACAGGCTTAGATAAAACGCCCTCTAATGCAGTACTGTAAAAATCTTGCTTACTGATCGTACATACAATACAAACTCTCTCACACACAATTGATTCAAGTCCGGTTCCGACCCTTTCCGCAAAACCAAAAACAAAAACAAAAAACACTCTTTAAGGAAAAAGCTCGTGTAAACCCATCGATGGACGAATCACATGACGAGGTAACAGGCAAAGCTGTAACATTANGAAGACAAATCCCCATTTCATGTGCGGTAAATTGAGATGAACTCGCTCGGCTCTTAATCGTACCTTCCACAGACTTAGTNTAGCCATTCCTCTTTTTCTCTCAAGCTTTGGAGACAAGGATCCAGACAATCTGGTACGCACTTGTNATAGCGTACCTGGTACACCTGTTCAAAGCACCATTTCTTATACCAGTATATCGGGCCAACATACGCATTCTAGCCTTTATGTAAGACANCAACCACTTCCCTGGTAGACACTGTGAACCTACATCTACAATCNTTATCTGGCTTATATTACAACCAAATGCCAGTCACCTTAGCGGTACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6240#1 ------------------------------------------------------------
consensus_6240#2 ------------------------------------------------------------
consensus_6240#0 CCGCTCTCTCGTATGCACAACACTGCCGGGTGCTGGTTTTTTGTTTGTCCAGTTAGAAAC 60
consensus_6240#1 ------------------------------------------------------------
consensus_6240#2 ------------------------------------------------------------
consensus_6240#0 TTCAGTATTTGTTTCGACATTAGTCCTTTCTTGGTGCTTTTCCACTCTATTTTCGGTGGC 120
consensus_6240#1 ------------------------------------------------------------
consensus_6240#2 ------------------------------------------------------------
consensus_6240#0 AGCTCAGTGTTACTAGCAGGCTTAAAGTGTAGTCAAATTACGAACATTCCGGTGCTCACC 180
consensus_6240#1 ------------------------------------------------------------
consensus_6240#2 ------------------------------------------------------------
consensus_6240#0 CAGTGCCAGGCCACTGGGAACTGATATATAAACCATCGCTAAATAAAGATGGTGTTTAGA 240
consensus_6240#1 ------------------------------------------------------------
consensus_6240#2 ------------------------------------------------------------
consensus_6240#0 AGCTGTAGGCAACATTTCTTTAGGAAGCTTCCATTTCCCAACTATCCCGAGAGACGTATT 300
consensus_6240#1 ------------------------------------------------------------
consensus_6240#2 ------------------------------------------------------------
consensus_6240#0 TTTCTATTTCTTTCATAAATCACTGTCCATGTTTTTCCTTGCAAATTTTCCCTCCATGCT 360
consensus_6240#1 ------------------------------------------------------------
consensus_6240#2 ------------------------------------------------------------
consensus_6240#0 TTTTAGGATAACATTTTTCGAATTAAATTATCTCTAGCTAGTCTTGCTATTGCCTCAAAC 420
consensus_6240#1 ------------------------------------------------------------
consensus_6240#2 ------------------------------------------------------------
consensus_6240#0 AAACGTGATGATGAGAGAGGAATGCTGATTTTAGGAAGCTTTTTCGCTGCCTACTTGATC 480
consensus_6240#1 ------------------------------------------------------------
consensus_6240#2 ------------------------------------------------------------
consensus_6240#0 GCTGCAACGTTGGCAAGCTTACGGTTTGGGTGGCGTTTAGGGAGGTTTAGGAGCCGCATG 540
consensus_6240#1 ------------------------------------------------------------
consensus_6240#2 ------------------------------------------------------------
consensus_6240#0 GTAGATAGAAACTTCAGTTCCTGCCCTTTCTGGTGTAGTCAACATGGATTTTACGTACAT 600
consensus_6240#1 -----------------CCGAT-TTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTAT 42
consensus_6240#2 ----------GAATTGCCCGAGGTTATTTCTAGTCAATGAACAACGAATACACATTTCAT 50
consensus_6240#0 CACAAGCATAATGTTAAATGAT-TTACTCCTTTTTTATTCAGACTCCAAAAGTATCTTAT 659
** *** * ** * ** * * * * ** * **
consensus_6240#1 T-----TTTTCTAGTCCAATGAACAACGAATACACATTTCATT----TTCTATTTC---- 89
consensus_6240#2 TTTCTATTTCCCTGTTCTAGAAGCTGTTCAAACGCCCTCTAATGCAGTACTGTAACGAGG 110
consensus_6240#0 T-----TTTTCTAGTCCAATGAACAACGAATACACATTTCATT----TTCTATTTC---- 706
* *** * ** * * * * * ** * * * * * ** * *
consensus_6240#1 CCTGTTCTAGAAGCT--GTTTAAACGCCCTCTAATGCAGTACTGTATAAATCTTGCTTAC 147
consensus_6240#2 CGTACAAAACAGGCTTAGATAAAACGCCCTCTAATGCAGTACTGTAAAAATCTTGCTTAC 170
consensus_6240#0 CCTGTTCTAGAAGCT--GTTTAAACGCCCTCTAATGCAGTACTGTATAAATCTTGCTTAC 764
* * * * *** * * ************************* *************
consensus_6240#1 TGATCGTACATACAATACAAACTCTCTCACACACAATCGATTCAAGTCCGGTTCCGACCC 207
consensus_6240#2 TGATCGTACATACAATACAAACTCTCTCACACACAATTGATTCAAGTCCGGTTCCGACCC 230
consensus_6240#0 TGATCGTACATACAATACAAACTCTCTCACACACAATCGATTCAAGTCCGGTTCCGACCC 824
************************************* **********************
consensus_6240#1 TTTCCGCAAAAC--AAAACAAAA-CAAAAAACACTCTT--AAGGAAAAGCTCGTGTAAAC 262
consensus_6240#2 TTTCCGCAAAACCAAAAACAAAAACAAAAAACACTCTTTAAGGAAAAAGCTCGTGTAAAC 290
consensus_6240#0 TTTCCGCAAAAC--AAAACAAAA-CAAAAAACACTCTT-AAGGAAAAAGCTCGTGTAAAC 880
************ ********* ************** * * ****************
consensus_6240#1 CCA--TCGATGGACGAATCA-ATGA-GAGGTAAC-AGGCAAAGCTGTAA-ATTAG--AAG 314
consensus_6240#2 CCA--TCGATGGACGAATCACATGACGAGGTAAC-AGGCAAAGCTGTAACATTANG-AAG 346
consensus_6240#0 CCNATCNGATGGACGAATCA-ATGA-GAGGTAACCAGGCAAAGCTGTAANATNNAGCAAG 938
** ************* **** ******** ************** ** ***
consensus_6240#1 ACA-A-TCCCCATTTCATGTGC-----GGTAA--TGAGAT----GAACTCGCACGGC--- 358
consensus_6240#2 ACA-AATCCCCATTTCATGTGC-----GGTAAATTGAGAT----GAACTCGCTCGGC--- 393
consensus_6240#0 ACCCATCCCCCATCCTCNATGTTGNCGGGTAAATTGAAGAATTGNAACTCCGCCACCGGG 998
** * ****** ** ***** *** ***** * *
consensus_6240#1 ---TCTTA------TCGTAC-TTCCACAG----TCTTTGTTT--AGCA--TCCTTTTTTT 400
consensus_6240#2 ---TCTTAA-----TCGTACCTTCCACAG----ACTTAGTNT--AGCCATTCCTCTTTTT 439
consensus_6240#0 GCTTCTTAATNCGNTNACNTTTCCCACCAGTTCTTTTTGNTTTAAGCCATTCCTTTTTTT 1058
***** * * **** ** * * *** **** *****
consensus_6240#1 --CTCTCAAGCTTTGGAGA-AAGGATCAGCACAATCTG-TACGCACT-GTTTTGC--TAC 453
consensus_6240#2 --CTCTCAAGCTTTGGAGACAAGGATCCAGACAATCTGGTACGCACTTGTNATAGCGTAC 497
consensus_6240#0 TTCTCTCNNGCTTTGGAGA-AANGATCAGCACACTCNG-TACGCACT-GTCTTGC--TAC 1113
***** ********** ** **** *** ** * ******** ** * ***
consensus_6240#1 CTG-TACACCTGTTC-AAAGCACCACTTTCTTATAC--ATATATCGG--CAAAATACGA- 506
consensus_6240#2 CTGGTACACCTGTTC-AAAGCACCA-TTTCTTATACCAGTATATCGGGCCAACATACGCA 555
consensus_6240#0 CTG-TACACCTGTNCCAAAGCAACCACTT------------------------------- 1141
*** ********* * ****** * **
consensus_6240#1 -TATAGC-TTTATGTAAGACAACA-CCACTCCCT--GTAGA-ACTGTAA--CAACATCTA 558
consensus_6240#2 TTCTAGCCTTTATGTAAGACANCAACCACTTCCCTGGTAGACACTGTGAACCTACATCTA 615
consensus_6240#0 ------------------------------------------------------------
consensus_6240#1 CATCTTTCTGCCTATTTTTAAAACAATGCAGTCACATAGGGTACATTCTTGAAGAGCAAA 618
consensus_6240#2 CAATCNT-TATCTGGCTT----ATATTACAACCAAATGCCAGTCACCTTAGCGGTACAT- 669
consensus_6240#0 ------------------------------------------------------------
consensus_6240#1 TCGATCAGTGGAGGAATAATACAGTGCTGCAATTATAGGGTGAAGTAACTCTAACTTTAT 678
consensus_6240#2 ------------------------------------------------------------
consensus_6240#0 ------------------------------------------------------------
consensus_6240#1 TTAAAAAATACTTTCTTTCTATAC 702
consensus_6240#2 ------------------------
consensus_6240#0 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||