|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 958 fasta sequence
[AATCCCAGGTTAAATATGGACATGTTTGCCGTTTGGGTCGTTCATAAGCATGTACTCGGTGCCGGATCTACCGGAAGGAGTTTCATTGCCGTACACGTTTGTAACCGTTTGGTTGACAAAATAGACTTTACCGATCTAGTGCCAACGCATGATGCTGACATTCGGCTTTCCGGCCATGTGAGCTGGGTAGGCCGTACGTCGGTGGAGGTAGTGGTCTGGATGGAACAGAAGCTGCATGGCAAGTGGCGCAAGCTTACCCGTGCACTGTTTCTGATGGCCGCTAGGGACGCTACCAACACCAAGGCAGCCTTCATAAATCCCCTAGTGCCTGCTAACGAAGAGGAGAAAGCAATCTTTGACGGAGGAGAATCACGCAAAAAACGACGCATACAGATGCAGCAGGAAGATTTGCTTAAGACGGAACCGAACGACTTCGAACAGCGCATGGTGCACGAGCTGTTCGTGAAATCGATCGATACGAAAAGCAAAGCGTTCAACAAACGTATCCTGCCGCCCGGTTTACGTATGGATGGAGGATGCCACCATGGCGAACATCGTGTTTTCCCATCCCGAAGATCGTAACGCGCACAACAAAGTGTTTGGCGGCTTTCTGATGCGCAATGCGCTAGAGTTGAGCTGGGCGTTGGCGTACAACTTTGCCAAGCGTCGTCCTAAGCTGGAACACATTTCGGACATTAGCTTCCATCATCCGGTAGACGTCTCGTCGATGCTGAACATGCAGGCCCATGTCATCTTTACCGATCTTCACTATATGGAAATTGTCGTTCTGGCGGATGTGTACGATGCCGTCACTGGACAGCAAACGACGACCAACAGTTTCTACTACACGTACTCGGTCGCTGAACGATTGCCGAAGATAATGCCCAAGACGTACCATGAGGCAATGTATTATTTGGACGGACGGCGAAAGTTCCGCTACGCGATGGGTATAGATACG]
[+] EMBL AL694201 [AATCCCAGGTTAAATATGGACATGTTTGCCGTTTGGGTCGTTCATAAGCATGTACTCGGTGCCGGATCTACCGGAAGGAGTTTCATTGCCGTACACGTTTGTAACCGTTTGGTTGACAAAATAGACTTTACCGATCTAGTGCCAACGCATGATGCTGACATTCGGCTTTCCGGCCATGTGAGCTGGGTAGGCCGTACGTCGGTGGAGGTAGTGGTCTGGATGGAACAGAAGCTGCATGGCAAGTGGCGCAAGCTTACCCGTGCACTGTTTCTGATGGCCGCTAGGGACGCTACCAACACCAAGGCAGCCTTCATAAATCCCCTAGTGCCTGCTAACGAAGAGGAGAAAGCAATCTTTGACGGAGGAGAATCACGCAAAAAACGACGCATACAGATGCAGCAGGAAGATTTGCTTAAGACGGAACCGAACGACTTCGAACAGCGCATGGTGCACGAGCTGTTCGTGAAATCGATCGATACGAAAAGCAAAGCGTTCAACAAACGTATCCTGCCGCCCGGTTTACGT ]
[+] EMBL BX628245 [ TTACCCGTGCACTGTTTCTGATGGCCGCTAGGGACGCTACCAACACCAAGGCAGCCTTCATAAATCCCCTAGTGCCTGCTAACGAAGAGGAGAAAGCAATCTTTGACGGAGGAGAATCACGCAAAAAACGACGCATACAGATGCAGCAGGAAGATTTGCTTAAGACGGAACCGAACGACTTCGAACAGCGCATGGTGCACGAGCTGTTCGTGAAATCGATCGATACGAAAAGCAAAGCGTTCAACAAACGTATCCTGCCGCCCGG TTACGTATGGATGGAGGATGCCACCATGGCGAACATCGTGTTTTCCCATCCCGAAGATCGTAACGCGCACAACAAAGTGTTTGGCGGCTTTCTGATGCGCAATGCGCTAGAGTTGAGCTGGGCGTTGGCGTACAACTTTGCCAAGCGTCGTCCTAAGCTGGAACACATTTCGGACATTAGCTTCCATCATCCGGTAGACGTCTCGTCGATGCTGAACATGCAGGCCCATGTCATCTTTACCGATCTTCACTATATGGAAATTGTCGTTCTGGCGGATGTGTACGATGCCGTCACTGGACAGCAAACGACGACCAACAGTTTCTACTACACGTACTCGGTCGCTGAACGATTGCCGAAGATAATGCCCAAGACGTACCATGAGGCAATGTATTATTTGGACGGACGGCGAAAGTTCCGCTACGCGATGGGTATAGATACG]
consensusID : consensus_6243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence
[AGAATNGCCCCAGGGTTTATACATAGCAAGTTGTCGTCGCTGCGGAAGATTGGTCAGCAAGATGATTGCAACCAGAGTTCGATTTGGTGGTTTGCAGAATATTGTGCAGCGACAATTTTGTGCCAGTCTGCAACCGAAACGATACGGAACCGTCCAATACCAACGCATCGCAAATGTCGCCACGGCCAACGCGCTGATAAGTGATACGAAAACAAGGGCCTCTCCAGTGACGTTAGGCGGTCATAGGATGTATTCCAGCATTAACTATTTGCGTGGCGATTTGGAGTGTACAGCCGGGACGATGAACGATGTAAAACAAACGATAATACAAAAGCTTGGAATCGAACGTCGGGTACACGCCGTTCGTGAGCACCCGCGAACATTTGGTAAAGTACGTGCCGCAATCGGTCAGTGCCCTGCCTCCCCGCAGTATGCAGGATTCATTTACATCGGCCATAATTCCGCTGACAACAGATAAAATTCTCAAGGACAAGTACGTCGGTTTCATGGGAAACGTTCGCGTTGGTCGGTTGATGGAAGATATGGACATGTTTGCCGTTTGGGTCGTTCATAAGCATGTACTCGTGCCGGATCTACCGGAAGGAGTTTCATTGCCGTACACGTTTGTAACCGTTTTGGTTGACAAAATAGACTTTACCGATCTAGTGCCAACGCATGATGCT]
[+] EMBL AL695743 [AGAATNGCCCCAGGGTTTATACATAGCAAGTTGTCGTCGCTGCGGAAGATTGGTCAGCAAGATGATTGCAACCAGAGTTCGATTTGGTGGTTTGCAGAATATTGTGCAGCGACAATTTTGTGCCAGTCTGCAACCGAAACGATACGGAACCGTCCAATACCAACGCATCGCAAATGTCGCCACGGCCAACGCGCTGATAAGTGATACGAAAACAAGGGCCTCTCCAGTGACGTTAGGCGGTCATAGGATGTATTCCAGCATTAACTATTTGCGTGGCGATTTGGAGTGTACAGCCGGGACGATGAACGATGTAAAACAAACGATAATACAAAAGCTTGGAATCGAACGTCGGGTACACGCCGTTCGTGAGCACCCGCGAACATTTGGTAAAGTACGTGCCGCA ]
[+] EMBL BX604606 [ ATACGGAACCGTCCAATACCAACGCATCGCAAATGTCGCCACGGCCAACGCGCTGATAAGTGATACGAAAACAAGGGCCTCTCCAGTGACGTTAGGCGGTCATAGGATGTATTCCAGCATTAACTATTTGCGTGGCGATTTGGAGTGTACAGCCGGGACGATGAACGATGTAAAACAAACGATAATACAAAAGCTTGGAATCGAA GTCGGGTACACGCCGTTCGTGAGCACCCGCGAACATTTGGTAAAGTACGTGCCGCAATCGGTCAGTGCCCTGCCTCCCCGCAGTATGCAGGATTCATTTACATCGGCCATAATTCCGCTGACAACAGATAAAATTCTCAAGGACAAGTACGTCGGTTTCATGGGAAACGTTCGCGTTGGTCGGTTGATGGAAGATATGGACATGTTTGCCGTTTGGGTCGTTCATAAGCATGTACTCGTGCCGGATCTACCGGAAGGAGTTTCATTGCCGTACACGTTTGTAACCGTTTTGGTTGACAAAATAGACTTTACCGATCTAGTGCCAACGCATGATGCT]
[+] EMBL BM595422 [ ccgAAGGGCCTCTCCAGTGACGTTAGGCGGTCATAGGATGTATTCCAGCATTAACTATTTGCGTGGTGATTTGGAGTGTACGGGCGGGACGATGAACGATGTAAAACAAACGATAATACAAAAGCTTGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6243#0 AATCCCAGGTTAAATATGGACATGTTTGCCGTTTGGGTCGTTCATAAGCATGTACTCGGT 60
consensus_6243#1 ------------------------------------------------------------
consensus_6243#0 GCCGGATCTACCGGAAGGAGTTTCATTGCCGTACACGTTTGTAACCGTTTGGTTGACAAA 120
consensus_6243#1 ---------------------AGAATNGCCCCAGG-GTTTATACATAGCAAGTTGTC--- 35
** *** * **** ** **** *
consensus_6243#0 ATAGACTTTACCGATCTAGTGCCAACGCATGATGCTGACATTCGGCTTTCCGGCCATGTG 180
consensus_6243#1 ---GTCGCTGCGGAAGATTGGTCA--GCAAGATGATTGCAACCAGAGTTC-GATTTGGTG 89
* * * * ** * ** *** **** * ** * * *** * ***
consensus_6243#0 AGCTG-GGTAGGCCGTACGTCGGTGGAGGTAGTGGTCTGGATGGAACAGAAGCTGCATGG 239
consensus_6243#1 GTTTGCAGAATATTGTGCAGCGACA-ATTTTGTG-CCAGTCTGCAACCGAAACGATACGG 147
** * * ** * ** * * *** * * ** *** *** * * **
consensus_6243#0 CAAGTGGCGCAAGCTTACCCGTGCACTGTTTCTGATGGCCGCTAGGGACGCTACCAACAC 299
consensus_6243#1 --AACCGTCCAA---TACCAACGCATCGCAAATG-TCGCCACGGCCAACGCGCTGATAAG 201
* * *** **** *** * ** * *** * **** * *
consensus_6243#0 CAAGGCAGCCTTCATAAATCCCCTAGTGCCTGCTAACGAAGAGGAGAAAGCAATCTTTGA 359
consensus_6243#1 TGATACGAAAACAAGGGCCTCTCCAGTGAC-GTTAGGCGGTCATAGGATGTATTCC--AG 258
* * * * * **** * * ** ** * * * **
consensus_6243#0 CGGAGGAGAATCACGCAAAAAAC-GACGCATACAGATGCAGCA--GGAAGATTTGCTTAA 416
consensus_6243#1 CATTAACTATTTGCGTGGCGATTTGGAGTGTACAGCCGGGACGATGAACGATGTAAAACA 318
* * * ** * * * ***** * * * * *** * *
consensus_6243#0 GACGG-AACCGAACGACTTCGAACAGCGCATGGTGCACGAGCTGTTCGTGAAATCGATCG 475
consensus_6243#1 AACGATAATACAAAAGCTTGGAATCGAACGTCGGGTACACGCCGTTCGTGAGCACCCGCG 378
*** ** ** *** *** * * * * * ** ** ******** * **
consensus_6243#0 ATACGAAAAGCAAAGCGTTCAACAAACGTATCCTGCCGCCCGGTTTACGTATGGATGGAG 535
consensus_6243#1 A-ACATTTGGTAAAGTACGTGCCGCAATCGGTCAGTGCCCTGCCTCCCCGCAGTATGCAG 437
* ** * **** * * * * ** * * * * *** **
consensus_6243#0 GATGCCACCATGGCGAACATCGTGTTTTCCCATCCCGAAGATCGTAACGCGCACAACAAA 595
consensus_6243#1 GATTCATTTACATCGGCCATAAT----TCCGCTGACAACAG--ATAAAATTCTCAAGGAC 491
*** * * ** *** * *** * * * *** * *** *
consensus_6243#0 GTGTTTGGCGGCTTTCTGATGCGCAAT-GCGCTAGAGTTGAGCTGGGCGTTGGCGTACAA 654
consensus_6243#1 AAGTACGTCGGTTTCATGGGAAACGTTCGCGTTGGTCGGTTGATGGAAGATA-TGGACAT 550
** * *** ** ** * * *** * * * *** * * * ***
consensus_6243#0 CTTTGCCAA--GCGTCGTCC-TAAGCTGGAACACATTTCGGACATTAGCTTCCATCATCC 711
consensus_6243#1 GTTTGCCGTTTGGGTCGTTCATAAGCATGTACTCGTGCCGGA------------TCTACC 598
****** * ***** * ***** * ** * * **** ** **
consensus_6243#0 GGTAGACGTCTCGTCGATGCTGAACATGCAGGCCCATGTCATCTTTACCGATCTTCACTA 771
consensus_6243#1 GGAAGGAGTTTCAT---TGCCGTACACGTT------TGTAACCGTTTTGG---TTGACAA 646
** ** ** ** * *** * *** * *** * * ** * ** ** *
consensus_6243#0 TATGGAAATTGTCGTTCTGGCGGATGTGTACGATGCCGTCACTGGACAGCAAACGACGAC 831
consensus_6243#1 AATAGACTTTACCGATCTAGTGCCAACGCATGATGCT----------------------- 683
** ** ** ** *** * * * * *****
consensus_6243#0 CAACAGTTTCTACTACACGTACTCGGTCGCTGAACGATTGCCGAAGATAATGCCCAAGAC 891
consensus_6243#1 ------------------------------------------------------------
consensus_6243#0 GTACCATGAGGCAATGTATTATTTGGACGGACGGCGAAAGTTCCGCTACGCGATGGGTAT 951
consensus_6243#1 ------------------------------------------------------------
consensus_6243#0 AGATACG 958
consensus_6243#1 -------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||