|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1154 fasta sequence
[CCGGCATTGCGCGCAACCGACCAAGCCAAAGTGACCGAATCTAAAGTGGCCTCAGCCCTGCCTGGACAGTGATGTACCGAAAGTGATTCCGCAGTGAGTGCAGCATAAACACTACACCCCAACGGGGGCAAAGGACGGACAGCATCATCGGCGAGGTCATCATCACGCTACTAGCGGACGTCGTCCGTACCCATCATAATCATATATACTCGCTCGTACCTCGTACCGCTGGCTCAACAAACCGCGCCCGATCAATTGTGTCAAATTGTTTCTATTTTGAGGTGTATATTATTTTTAAAACTCCCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTAGTCCTCTTGCGTGAGGGTTTGGGGCACGGATTAAGCGGAATTGCAGTCGGAATCCGGTACGGGGCTGGTGCAGTCGAGCGTGAGGCGTGCGAGCTAGTGCGAACGTACGAGAACCGAGTGTCATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTGCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACCAACTTCAGCCTCAGCCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAACGTGGTCGTCGCACCGTTCACCCTGCAGAACAGCGTAGCGATGCTGTACTCGATCGCAACCGGGACAACACGTGACCGGTTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGAGTTCATCATCAACCAGAAGCTGCTGCACTACACGCTCAGCGATGCCGGCGGTTCGGAGGGCTTTCGCATGAAGAACCGCATCATCGTGAACGGATTCCGCGAGGTGGATGCCCGCATGCGGGACATCATGCACGAGGACCTGGACACGGTGCTGATGTACTTCGATTTCGCCCAGCGCGAAGGCGTCGTGCGACGGGCCAACCACTTCCTTAGCATGCGCACGAACGGCCTCATCCGGGACACGCTCTTCCTCGGCGATGTGCCGAAGCAGCTGCAGATGATACAGCTGAGTGCCGGCTCG-TTCCGGCCACCGTTTGCGAGCGGGTTCGATGCGCGGGACACGATCGCACGCGACTTTCGGACCGGCTGGATCGACAAGCTCTACCAAACGACGACCAT]
[+] EMBL BM633417 [CCGGCATTGCGCGCAACCGACCAAGCCAAAGTGACCGAATCTAAAGTGGCCTCAGCCCTGCCTGGACAGTGATGTACCGAAAGTGATTCCGCAGTGAGTGCAGCATAAACACTACACCCCAACGGGGGCAAAGGACGGACAGCATCATCGGCGAGGTCATCATCACGCTACTAGCGGACGTCGTCCGTACCCATCATAATCATATATACTCGCTCGTACCTCGTACCGCTGGCTCAACAAACCGCGCCCGATCAATTGTGTCAAATTGTTTCTATTTTGAGGTGTATATTATTTTTAAAACTCCCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTAGTCCTCTTGCGTGAGGGTTTGGGGCACGGATTAAGCGGAATTGCAGTCGGAATCCGGTACGGGGCTGGTGCAGTCGAGCGTGAGGCGTGCGAGCTAGTGCGAACGTACGAGAACCGAGTGACATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTTCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACCAACTTCAGCCTCAGCCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAACGTGGTCGTCGCACCGTTCACCCTGCAGAACAG ]
[+] EMBL BX626181 [ ACGGGGCTGGTGCNGTCGAGCGTGAGGCGTGCGAGCTAGTGCGAACGTACGAGAACCGAGTGTCATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTGCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACCAACTTCAGCCTCAGCCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAACGTGGTCGTCGCACCGTTCACCCTGCAGAACAGCGTAGCGATGCTGTACTCGATCGCAACCGGGACAACACGTGACCGGTTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGAGTTCATCATCAACCAGAAGCTGCTGCACTACACGCTCAGCGATGCCGGCGGTTCGGAGGGCTTTCGCATGAAGAACCGCATCATCGTGAACGGATTCCGCGAGGTGGATGCCCGCATGCGGGACATCATGCACGAGGACCTGGACACGGTGCTGATGTACTTCGATTTCGCCCAGCGCGAAGGCGTCGTGCGACGGGCCAACCACTTCCTTAGCATGCGCACGAACGGCCTCATCCGGGACACGCTCTTCCTCGGCGATGTGCCGAAGCAGCTGCAGATGATACAGCTGAGTGCCNGCTCG TTCCGGCCACCGTTTGCGAGCGGGTTCGATGCGCGGGACACGATCGCACGCGACTTTCGGACCGGCTGGATCGACAAGCTCTACCAAACGACGACCAT]
[+] EMBL BM591917 [ ccGGGCTGGTGCAGTCGAGCGTGAGGCGTGCGAGCTAGTGCGAACGTACGAGAACCGAGTGTCATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTGCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACCAACTTCAGCCTCAGCCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAACGTGGTCGTCGCACCGTTCACCCTGCAGAACAGCGTAGCGATGCTGTACTCGATCGCAACCGGGACAACACGTGACCGGTTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGAGTTCATCATCAACCAGAAGCTGCTGCACTACACGCTCAGCGATGCCGGCGGTTCGGAGGGCTTTCGCATGAAGAACCGCATCATCGTGAACGGATTCCGCGAGGTGGATGCCCGCATGCGGGACATCATGCACGAGGACCTGGACACGGTGCTGATGTACTTCGATTTCGCCCAGCGCGAAGGCGTCGTGCGACGGGCCAACCACTTCCTTAGCATGCGCACGAACGGCCTCATCCGGGACACGCTCTTCCTCGGCGATGTGCCAAAGCAGCTGCAGATGATACAGCTGAGTGCCGGCTCGTTTCCGGCCACCGTTTtgc ]
[+] EMBL BM606357 [ ccgGTGCGAGCTAGTGCGAACGTACGAGAACCGAGTGTCATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTGCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACCAACTTCAGCCTCAGCCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAACGTGGTCGTCGCACCGTTCACCCTGCAGAACAGCATAGCGATGCTGTACTCGATCGCAACCGGGACAACACGTGACCGGTTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGAGTTCATCATCAACCAGAAGCTGCTGCACTACACGCTCAGCGATGCCGGCGGTTCGGAGGGCTTTCGCATGAAGAACCGCATCATCGTGAACGGATTCCGCGAGGTGGATGCCCGCATGCGGGACATCATGCACGAGGACCTGGACACGGTGCTGATGTACTTCGATTTCGCCCAGCGCGAAGGCGTCGTGCGACGGGCCAACCACTTCCTTAGCATGCGCACGAACGGCCTAATCCGGGACACGCTCTTCCTCGGCGATGTGCCGAAGCAGCTGCAGATGATACAGCTGAGTGCCGGCTCG TTCCGGCCACCGTTTGCGAGCGGGTTCGATGCGCGGGACACGATCGCGCGCGACTTTCGGA ]
consensusID : consensus_6244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence
[ATGCTCAGGCAGAATCGCCNGAGGTTAACTAGTGCGAACGTACGAGAACCGAGTGACATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTTCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACAATTCAGCTCAGCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAAACGTGGTCGTCGCACCGTTCACCCTGCAGAAACAGCATAGCGATGCTGTACTCGATCGGCAACCGGGACAACACGTGACCGGTTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGANGTTCATCATCAACCCANAAGGCTGCTGCACTTACACCGCTCAGCGATGCCGGCGGGTTTCGGAAGGGGCTTCTCGGCNCATGAAGAACCGGCATCATCCGGTGAACCGGGATTCCCCGCGGAGGTTGGAATTGCCCGCAATTGCGGGGACCATTCACTTGCACGGANGGGACCCTG]
[+] EMBL AL696561 [ATGCTCAGGCAGAATCGCCNGAGGTTAACTAGTGCGAACGTACGAGAACCGAGTGACATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTTCTGGCCGAATCCGGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACAATTCAGCTCAGCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAAACGTGGTCGTCGCACCGTTCACCCTGCAGAAACAGCATAGCGATGCTGTACTCGATCGGCAACCGGGACAACACGTGACCGGTTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGANGTTCATCATCAACCCANAAGGCTGCTGCACTTACACCGCTCAGCGATGCCGGCGGGTTTCGGAAGGGGCTTCTCGGCNCATGAAGAACCGGCATCATCCGGTGAACCGGGATTCCCCGCGGAGGTTGGAATTGCCCGCAATTGCGGGGACCATTCACTTGCACGGANGGGACCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6244#0 CCGGCATTGCGCGCAACCGACCAAGCCAAAGTGACCGAATCTAAAGTGGCCTCAGCCCTG 60
consensus_6244#1 ------------------------------------------------------------
consensus_6244#0 CCTGGACAGTGATGTACCGAAAGTGATTCCGCAGTGAGTGCAGCATAAACACTACACCCC 120
consensus_6244#1 ------------------------------------------------------------
consensus_6244#0 AACGGGGGCAAAGGACGGACAGCATCATCGGCGAGGTCATCATCACGCTACTAGCGGACG 180
consensus_6244#1 ------------------------------------------------------------
consensus_6244#0 TCGTCCGTACCCATCATAATCATATATACTCGCTCGTACCTCGTACCGCTGGCTCAACAA 240
consensus_6244#1 ------------------------------------------------------------
consensus_6244#0 ACCGCGCCCGATCAATTGTGTCAAATTGTTTCTATTTTGAGGTGTATATTATTTTTAAAA 300
consensus_6244#1 ------------------------------------------------------------
consensus_6244#0 CTCCCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTCGCCCTCGCTCGCCCTCGCCCTCGCT 360
consensus_6244#1 ------------------------------------------------------------
consensus_6244#0 CGCCCTAGTCCTCTTGCGTGAGGGTTTGGGGCACGGATTAAGCGGAATTGCAGTCGGAAT 420
consensus_6244#1 ------------------------------------------------------------
consensus_6244#0 CCGGTACGGGGCTGGTGCAGTCGAGCGTGAGGCGTGCGAGCTAGTGCGAACGTACGAGAA 480
consensus_6244#1 --------ATGCTCAGGCAGAATCGCCNGAGGTT----AACTAGTGCGAACGTACGAGAA 48
*** **** ** **** * ********************
consensus_6244#0 CCGAGTGTCATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTGCTGGCCGAATCC 540
consensus_6244#1 CCGAGTGACATGTGGTATGGTACGGTTGTGCTGTTCCTGTTGTGGGTTCTGGCCGAATCC 108
******* *************************************** ************
consensus_6244#0 GGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACCAACTTCAGC 600
consensus_6244#1 GGTTCCGGTGTGGGCGGCCTGACGCAGCTGCGCTTCCCGTACAGCACCACAA--TTCAGC 166
************************************************** * ******
consensus_6244#0 CTCAGCCTGTACAAGGCGGCGTTCAAGCCGGAGCAGAA-CGTGGTCGTCGCACCGTTCAC 659
consensus_6244#1 -TCAGC-TGTACAAGGCGGCGTTCAAGCCGGAGCAGAAACGTGGTCGTCGCACCGTTCAC 224
***** ******************************* *********************
consensus_6244#0 CCTGCAGAA-CAGCGTAGCGATGCTGTACTCGATCG-CAACCGGGACAACACGTGACCGG 717
consensus_6244#1 CCTGCAGAAACAGCATAGCGATGCTGTACTCGATCGGCAACCGGGACAACACGTGACCGG 284
********* **** ********************* ***********************
consensus_6244#0 TTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGAG-TTCATCATCAACC--AGAAG 774
consensus_6244#1 TTGCGGGAGGTGTTCGGTCTGCCGGCCAACTTTACCGANGTTCATCATCAACCCANAAGG 344
************************************** ************* * *
consensus_6244#0 CTGCTGCACT-ACAC-GCTCAGCGATGCCGGCGG--TTCGGA--GGGCTTT----CGCAT 824
consensus_6244#1 CTGCTGCACTTACACCGCTCAGCGATGCCGGCGGGTTTCGGAAGGGGCTTCTCGGCNCAT 404
********** **** ****************** ****** ****** * ***
consensus_6244#0 GAAGAACCG-CATCATC--GTGAAC--GGATTCCGCGAGG----TGGA--TGCCCGCA-- 871
consensus_6244#1 GAAGAACCGGCATCATCCGGTGAACCGGGATTCCCCGCGGAGGTTGGAATTGCCCGCAAT 464
********* ******* ****** ******* ** ** **** ********
consensus_6244#0 TGCGGGACATCATGCACGAGGACCTGGACACGGTGCTGATGTACTTCGATTTCGCCCAGC 931
consensus_6244#1 TGCGGGG-ACCATTCACTTGCAC--GGANGGGACCCTG---------------------- 499
****** * *** *** * ** *** * ***
consensus_6244#0 GCGAAGGCGTCGTGCGACGGGCCAACCACTTCCTTAGCATGCGCACGAACGGCCTCATCC 991
consensus_6244#1 ------------------------------------------------------------
consensus_6244#0 GGGACACGCTCTTCCTCGGCGATGTGCCGAAGCAGCTGCAGATGATACAGCTGAGTGCCG 1051
consensus_6244#1 ------------------------------------------------------------
consensus_6244#0 GCTCGTTCCGGCCACCGTTTGCGAGCGGGTTCGATGCGCGGGACACGATCGCACGCGACT 1111
consensus_6244#1 ------------------------------------------------------------
consensus_6244#0 TTCGGACCGGCTGGATCGACAAGCTCTACCAAACGACGACCAT 1154
consensus_6244#1 -------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||