cluster # 6249

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Anopheles gambiae
cluster # 6249 cluster # 6249 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6249#0 length = 1255 sequences # 4

consensus_6249#1 length = 143 sequences # 1

consensusID : consensus_6249#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1255
fasta sequence

                              [GCCCGCTGCAATGTGGTGTCACATACACACACACGCGCACTCACACGGGCAACCTAATTTGTTGTCGATTGGTTAGGGATGAAAGCGTGTTTTAATTTGATTACGGTTGGAACGGAAAAGGAAAAAGGTTCAAAGATCCCATGGGCAGTATGGGAATTGCAATTATCCTCCTCATGGTCCAAAGATCGAGTGAGTTTTAATACAAACATAAACGCTTTCCGGCGTCTCTCAGAGAGTGAAAGAGTGAGAGAGAAATAGAGCGAAAGAGAGGGGCTCCCGTCCCCGTGTGGTGCGTGTTTTTTTGTAAAAAAAGAAGCAAAGAGATGGAGGCCGAGTAAAGGGATCGTTTCCATCGCGAAAAAGTACTGTTTTGTGGACGTTTCAAAACGCAAAAAGCGCACCCTGGCGAGAGCGCCCCACCCACAATCGAACGGGAAAACAGATTTTGCAAAAGAGATTACTTTTAGAGATTTAGACCAAAACCAGACGTTAAAGCAAAACAAAAAACATTAAATCAATGTGCCATCGTACAGGAGGAAAAGAAAAAGGCACCATAAATGTGAACACTCCAAAGAGACACACACACACACACGTCCTCGTTTTGCCTCTATCACCCATTTTTATCTTCATCACCCTTTTACTTTTGTGTATATGTGTACATGTTGTTTCGAGAAGTCACGAATTTGTATTAAATTATTATTATTATATATTTTATTTTGCTCTTATATATCCGTAACCAAACGGACGCGCGTTGAATTGTAGTTCGTATCAAGGGAAGGGAAAGGATAATAGGAAAATATGGCTGAATAGGAAGAAGAAAGGAAGGTATTCAAATGTTGGCGAAAATGGGGGAAAAATTGCGAATTGTTATTTTGATTTGTTGTTTATTTACACAGTTTGTTTGTTTGTTTTACATGCTGATCTCGTTTGGCACGGTGTAACTCTGTCATGTAAAAAGTCGATTACATATATGCACACATTTACACTGTTTGAACAAAAGTTTTACTATCCATTCGCATCGTCCTTTTCTAGCACCCGTGCGCCCGTATATTTTTGTATAGTATAGCACACATTTGCAGACACTTTTGTGATAGACACGTGTCAGCCCCGGCTCTCCACATGGTTTTGTAACGTTCACCCCATCTTGGCACTTGGCACTAGTCGGAAAACAGGTGGCAGTGAGAGGGGCGGCGGGCAGGAGAGGATCGGCAAACGTGGTAAAGATAGTATTGCAGAGGCACAGCATAGTAGGCAC]

[+] EMBL BX625432             [GCCCGCTGCAATGTGGTGTCACATACACACACACGCGCACTCACACGGGCAACCTAATTTGTTGTCGATTGGTTAGGGATGAAAGCGTGTTTTAATTTGATTACGGTTGGAACGGAAAAGGAAAAAGGTTCAAAGATCCCATGGGCAGTATGGGAATTGCAATTATCCTCCTCATGGTCCAAAGATCGAGTGAGTTTTAATACAAACATAAACGCTTTCCGGCGTCTCTCAGAGAGTGAAAGAGTGAGAGAGAAATAGAGCGAAAGAGAGGGGCTCCCGTCCCCGTGTGGTGCGTGTTTTTTTGTAAAAAAAGAAGCAAAGAGATGGAGGCCGAGTAAAGGGATCGTTTCCATCGCGAAAAAGTACTGTTTTGTGGACGTTTCAAAACGCAAAAAGCGCACCCTGGCGAGAGCGCCCCACCCACAATCGAACGGGAAAACAGATTTTGCAAAAGAGATTACTTTTAGAGATTTAGACCAAAACCAGACGTTAAAGCAAAACAAAAAACATTAAATCAATGTGCCATCGTACAGGAGGAAAAGAAAAAGGCACCATAAATGTGAACACTCCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX616041             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GACGTTAAAGCAAAACAAAAAACATTAAATCAATGTGCCATCGTACAGGAGGAAAAGAAAAAGGCACCATAAATGTGAACACTCCAAAGAGACACACACACACACACGTCCTCGTTTTGCCTCTATCACCCATTTTTATCTTCATCACCCTTTTACTTTTGTGTATATGTGTACATGTTGTTTCGAGAAGTCACGAATTTGTATTAAATTATTATTATTATATATTTTATTTTGCTCTTATATATCCGTAACCAAACGGACGCGCGTTGAATTGTAGTTCGTATCAAGGGAAGGGAAAGGATAATAGGAAAATATGGCTGAATAGGAAGAAGAAAGGAAGGTATTCAAATGTTGGCGAAAATGGGGGAAAAATTGCGAATTGTTATTTTGATTTGTTGTTTATTTACACAGTTTGTTTGTTTGTTTTACATGCTGATCTCGTTTGGCACGGTGTAACTCTGTCATGTAAAAAGTCGATTACATATATGCACACATTTACA                                                                                                                                                                                                                                                                              ]
[+] EMBL BX618243             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGAGACACACACACACACACGTCCTCCTTTTGCCTCTATCACCCATTTTTATCTTCATCACCCTTTTACTTTTGTGTATATGTGTACATGTTGGTTCGAGAAGTCACGAATTTGTATTAAATTATTATTATTATATATTTTATTTTGCTCTTATATATCCGTAACCAAACGGACGCGCGTTGAATTGTAGTTCGTATCAAGGGAAGGGAAAGGATAATAGGAAAATATGGCTGAATAGGAAGAAGAAAGGAAGGTATTCAAATGTTGGCGAAAATGGGGGAAAAATTGCGAATTGTTATTTTGATTTGTTGTTTATTTACACAGTTTGTTTGTTTGTTTTACATGCTGATCTCGTTTGGCACGGTGTAACTCTGTCATGTAAAAAGTCGATTACATATATGCACACATTTACACTGTTTGAACAAAAGTTTTACTATCCATTCGCATCGTCCTTTTCTAGCACCCGTGCGCCCGTATATTTTTGTATAGTATAGCACACATTTGCAGACACTTTTGTGATAGACACGTGTCAGCCCCGGCTCTCCACATGGTTTTGTAACGTTCACCCCATCTTGGCACTTGGCACTAGTCGGAAAACAGGTGGCAGTGAGAGGGGCGGCGGGCAGGAGAGGATCGGCAAACGTGGTAAAGATAGTATTGCAGAGGCACAGCATAGTAGGCAC]
[-] EMBL BM613429             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccTTGATTTGTTGTTTATTTACACAGTTTGTTTGTTTGTTTTACATGCTGATCTCGTTTGGCACGGTGTAACTCTGTCATGTAAAAAGTCGATTACATATATGCACACATTTACACCGTTTGAACAAAAGTTTTACTATCCATTCGCATCGTCCTTTTCTAGCACCCGTGCGCCAGTATATTTTTGTATAGTATAGCACACATT                                                                                                                                                                                     ]




>consensus_6249#0
GCCCGCTGCAATGTGGTGTCACATACACACACACGCGCACTCACACGGGCAACCTAATTT
GTTGTCGATTGGTTAGGGATGAAAGCGTGTTTTAATTTGATTACGGTTGGAACGGAAAAG
GAAAAAGGTTCAAAGATCCCATGGGCAGTATGGGAATTGCAATTATCCTCCTCATGGTCC
AAAGATCGAGTGAGTTTTAATACAAACATAAACGCTTTCCGGCGTCTCTCAGAGAGTGAA
AGAGTGAGAGAGAAATAGAGCGAAAGAGAGGGGCTCCCGTCCCCGTGTGGTGCGTGTTTT
TTTGTAAAAAAAGAAGCAAAGAGATGGAGGCCGAGTAAAGGGATCGTTTCCATCGCGAAA
AAGTACTGTTTTGTGGACGTTTCAAAACGCAAAAAGCGCACCCTGGCGAGAGCGCCCCAC
CCACAATCGAACGGGAAAACAGATTTTGCAAAAGAGATTACTTTTAGAGATTTAGACCAA
AACCAGACGTTAAAGCAAAACAAAAAACATTAAATCAATGTGCCATCGTACAGGAGGAAA
AGAAAAAGGCACCATAAATGTGAACACTCCAAAGAGACACACACACACACACGTCCTCGT
TTTGCCTCTATCACCCATTTTTATCTTCATCACCCTTTTACTTTTGTGTATATGTGTACA
TGTTGTTTCGAGAAGTCACGAATTTGTATTAAATTATTATTATTATATATTTTATTTTGC
TCTTATATATCCGTAACCAAACGGACGCGCGTTGAATTGTAGTTCGTATCAAGGGAAGGG
AAAGGATAATAGGAAAATATGGCTGAATAGGAAGAAGAAAGGAAGGTATTCAAATGTTGG
CGAAAATGGGGGAAAAATTGCGAATTGTTATTTTGATTTGTTGTTTATTTACACAGTTTG
TTTGTTTGTTTTACATGCTGATCTCGTTTGGCACGGTGTAACTCTGTCATGTAAAAAGTC
GATTACATATATGCACACATTTACACTGTTTGAACAAAAGTTTTACTATCCATTCGCATC
GTCCTTTTCTAGCACCCGTGCGCCCGTATATTTTTGTATAGTATAGCACACATTTGCAGA
CACTTTTGTGATAGACACGTGTCAGCCCCGGCTCTCCACATGGTTTTGTAACGTTCACCC
CATCTTGGCACTTGGCACTAGTCGGAAAACAGGTGGCAGTGAGAGGGGCGGCGGGCAGGA
GAGGATCGGCAAACGTGGTAAAGATAGTATTGCAGAGGCACAGCATAGTAGGCAC

consensusID : consensus_6249#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 143
fasta sequence

                              [CACATCCGCAGACACTGGGGGGAAAGACACGGGGCAGCCCCGGCCCCCCACACGGTGGGGGAACGGTCACCCCATCTGGGCACTGGGCACTAGTCGGAAAACAGGGGGCAGCGAGAGGGGCGGCGGGCAGGAGAGGACCGGCA]

[+] EMBL BX618562             [CACATCCGCAGACACTGGGGGGAAAGACACGGGGCAGCCCCGGCCCCCCACACGGTGGGGGAACGGTCACCCCATCTGGGCACTGGGCACTAGTCGGAAAACAGGGGGCAGCGAGAGGGGCGGCGGGCAGGAGAGGACCGGCA]




>consensus_6249#1
CACATCCGCAGACACTGGGGGGAAAGACACGGGGCAGCCCCGGCCCCCCACACGGTGGGG
GAACGGTCACCCCATCTGGGCACTGGGCACTAGTCGGAAAACAGGGGGCAGCGAGAGGGG
CGGCGGGCAGGAGAGGACCGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6249#0      GCCCGCTGCAATGTGGTGTCACATACACACACACGCGCACTCACACGGGCAACCTAATTT 60
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      GTTGTCGATTGGTTAGGGATGAAAGCGTGTTTTAATTTGATTACGGTTGGAACGGAAAAG 120
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      GAAAAAGGTTCAAAGATCCCATGGGCAGTATGGGAATTGCAATTATCCTCCTCATGGTCC 180
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      AAAGATCGAGTGAGTTTTAATACAAACATAAACGCTTTCCGGCGTCTCTCAGAGAGTGAA 240
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      AGAGTGAGAGAGAAATAGAGCGAAAGAGAGGGGCTCCCGTCCCCGTGTGGTGCGTGTTTT 300
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      TTTGTAAAAAAAGAAGCAAAGAGATGGAGGCCGAGTAAAGGGATCGTTTCCATCGCGAAA 360
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      AAGTACTGTTTTGTGGACGTTTCAAAACGCAAAAAGCGCACCCTGGCGAGAGCGCCCCAC 420
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      CCACAATCGAACGGGAAAACAGATTTTGCAAAAGAGATTACTTTTAGAGATTTAGACCAA 480
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      AACCAGACGTTAAAGCAAAACAAAAAACATTAAATCAATGTGCCATCGTACAGGAGGAAA 540
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      AGAAAAAGGCACCATAAATGTGAACACTCCAAAGAGACACACACACACACACGTCCTCGT 600
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      TTTGCCTCTATCACCCATTTTTATCTTCATCACCCTTTTACTTTTGTGTATATGTGTACA 660
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      TGTTGTTTCGAGAAGTCACGAATTTGTATTAAATTATTATTATTATATATTTTATTTTGC 720
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      TCTTATATATCCGTAACCAAACGGACGCGCGTTGAATTGTAGTTCGTATCAAGGGAAGGG 780
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      AAAGGATAATAGGAAAATATGGCTGAATAGGAAGAAGAAAGGAAGGTATTCAAATGTTGG 840
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      CGAAAATGGGGGAAAAATTGCGAATTGTTATTTTGATTTGTTGTTTATTTACACAGTTTG 900
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      TTTGTTTGTTTTACATGCTGATCTCGTTTGGCACGGTGTAACTCTGTCATGTAAAAAGTC 960
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      GATTACATATATGCACACATTTACACTGTTTGAACAAAAGTTTTACTATCCATTCGCATC 1020
consensus_6249#1      ------------------------------------------------------------
                                                                                  

consensus_6249#0      GTCCTTTTCTAGCACCCGTGCGCCCGTATATTTTTGTATAGTATAGCACACATTTGCAGA 1080
consensus_6249#1      ------------------------------------------------CACATCCGCAGA 12
                                                                      *****  *****

consensus_6249#0      CACTTTTGTGATAGACACGTGTCAGCCCCGGCTCTCCACATGGTTTTGTAACGTTCACCC 1140
consensus_6249#1      CACTGGGGGGAAAGACACGGGGCAGCCCCGGCCCCCCACACGGTGGGGGAACGGTCACCC 72
                      ****   * ** ******* * ********** * ***** ***   * **** ******

consensus_6249#0      CATCTTGGCACTTGGCACTAGTCGGAAAACAGGTGGCAGTGAGAGGGGCGGCGGGCAGGA 1200
consensus_6249#1      CATCTGGGCACTGGGCACTAGTCGGAAAACAGGGGGCAGCGAGAGGGGCGGCGGGCAGGA 132
                      ***** ****** ******************** ***** ********************

consensus_6249#0      GAGGATCGGCAAACGTGGTAAAGATAGTATTGCAGAGGCACAGCATAGTAGGCAC 1255
consensus_6249#1      GAGGACCGGCA-------------------------------------------- 143
                      ***** *****