cluster # 6250

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Anopheles gambiae
cluster # 6250 cluster # 6250 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6250#0 length = 942 sequences # 4

consensus_6250#1 length = 632 sequences # 1

consensusID : consensus_6250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 942
fasta sequence

                              [CCGGGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTCCAACCGCACAAATAAAGATTGCGAGATTGCGACCGTGTTTGCCAACGATGAAGTAGACCGTGGGTGTGTATGTGAGTGTATGTAAAAGAGAGAAAAAGAGATAG--AGAGAGACAGAGAG--GACTGGTAACAGAATCCAGCTAGGCCAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAACAAACACTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCACCCCGACGCCCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGGATAG-TGGCGCGGAAGGGCGTGAGCAACGATGTGGTCGTCCCGGT-GAGGAGCGCCGTCCCGGAGCACCCATCAACAGTCGGTGCGTCC-GGGAACAGCACGGCCCACACACAGGCAAACGCAACGACCGGCACGACGCTGCACGAGTCCACGTCTTCCTCCGGCGCGCACGGTTCCACCCTACCTGCAATCACCAGTGCAAACGCGTCCTCAACCGCACCGAGCTCAGCAACGTCGACGTCAGCGGTACAGCCGCCACCACAATCAAGGCCGCCCACCAGTGCCAACGCAACAACGACCCAGCGAACGGTCGCGGCTAGCAGCACCAGTAGCAGCAGCACAACCACCACCACCACCACCACATCAACCACAACGACTACAACGACAAGTACCACCACGACCACCACCACCACCACCACCAAACCTCCGAAGAAGCCAAAGA]

[+] EMBL BM592848             [CCGGGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTCCAACCGCACAAATAAAGATTGCGAGATTGCGACCGTGTTTGCCAACGATGAAGTAGACCGTGGGTGTGTATGTGAGTGTATGTAAAAGAGAGAAAAAGAGATAG  AGAGAGACAGAGAG  GACTGGTAACAGAATCCAGCTAGGCCAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAACAAACGCTTGCCAGCACCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCACCCCGACGCCCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGGATAGTTGGCGCGGAAGGGCGTGAGCAACGATGTGGTCGTCCCGGTGGAGGAGCGCCGTCCCGGAGCACCCATCAACAGTCGGTGCGTCCGGGGAACAGCACGGCCCACACACAGGCAAACGCAACGACCGGCACGACGCTGCACGAGTCCACGTCTTCCTCCGGCGCGCACGGGTC                                                                                                                                                                                                                                                                          ]
[+] EMBL BM579350             [ ccGGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTCCAACCGCACAAATAAAGATTGCGAGATTGCGACCGTGTTTGCCAACGATGAAGTAGACTGTAGGTGTGTATGTGAGTGTATGTAAAAGAGAGAAAAAGAGATAGATAGAGAGAGAGAGAGACGACTGGTAACAGAATCCAGCTAGGCCAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAACAAACACTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCACCCCGACGCCCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGGATAG TGGCGCGGAAGGGCGTGAGCAACGATGTGGTCGTCCCGGT GAGGAGCGCCGTCCCGGAGCACCCATCAACAGTCGGTGCGTCC GGGAACAGCACG                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM619159             [                                                                                                                                                                                                                                                                        ccgCAAACACTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCACCCCGACGCCCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGGATAG TGGCGCGGAAGGGCGTGAGCAACGATGTGGTCGTCCCGGT GAGGAGCGCCGTCCCGGAGCACCCATCAACAGTCGGTGCGTCC GGGAACAGCACGGCCCACACACAGGCAAACGCAACGACCGGCACGACGCTGCACGAGTCCACGTCTTCCTCCGGCGCGCACGGTTCCACCCTACCTGCAATCACCAGTGCAAACGCGTCCTCAACCGCACCGAGCTCAGCAACGTCGACGTCAGCGGTACAGCCGCCACCACAATCAAGGCCGCCCACCAGTGCCAACGCAACAACG                                                                                                                                                 ]
[+] EMBL BM604239             [                                                                                                                                                                                                                                                                                    ccgAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCACCCCGACGCCCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAG   CACGCCGACCGGGGCCAGCGGATAG TGGCGCGGAAGGGCGTGAGCAACGATGTGGTCGTCCCGGT GAGGGGCGCCGTCCCGGAGCACCCATCAACAGTCGGTGCGTCC GGGAACAGCACGGCCCACACACAGGCAAACGCAACGACCGGCACGACACTGCACGAGTCCACGTCTTCCTCCGGCGCGTACGGTTCCACCCTACCTGCAATCACCAGTGCAAACGCGTCCTCAACCGCACCGAGCTCAGCAACGTCGACGTCAGCGGTACAGCCGCCACCACAATCAAGGCCGCCCACCAGTGCCAACGCAACAACGACCCAGCGAACGGTCGCGGCTAGCAGCACCAGTAGCAGCAGCACAACCACCACCACCACCACCACATCAACCACAACGACTACAACGACAAGTACCACCACGACCACCACCACCACCACCACCAAACCTCCGAAGAAGCCAAAGA]




>consensus_6250#0
CCGGGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTC
CAACCGCACAAATAAAGATTGCGAGATTGCGACCGTGTTTGCCAACGATGAAGTAGACCG
TGGGTGTGTATGTGAGTGTATGTAAAAGAGAGAAAAAGAGATAGAGAGAGACAGAGAGGA
CTGGTAACAGAATCCAGCTAGGCCAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGA
AACAGTCTGCCAAAAAGGTGCAACAAACACTTGCCAGCAGCAGTAGCAGCAAGATGCGGA
CGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCG
GGGCGCCACCACAGCACCCCGACGCCCCGAATGTGAACGTCACCGTGGCGAAGGTGATCG
GTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGC
ACCACGCCGACCGGGGCCAGCGGATAGTGGCGCGGAAGGGCGTGAGCAACGATGTGGTCG
TCCCGGTGAGGAGCGCCGTCCCGGAGCACCCATCAACAGTCGGTGCGTCCGGGAACAGCA
CGGCCCACACACAGGCAAACGCAACGACCGGCACGACGCTGCACGAGTCCACGTCTTCCT
CCGGCGCGCACGGTTCCACCCTACCTGCAATCACCAGTGCAAACGCGTCCTCAACCGCAC
CGAGCTCAGCAACGTCGACGTCAGCGGTACAGCCGCCACCACAATCAAGGCCGCCCACCA
GTGCCAACGCAACAACGACCCAGCGAACGGTCGCGGCTAGCAGCACCAGTAGCAGCAGCA
CAACCACCACCACCACCACCACATCAACCACAACGACTACAACGACAAGTACCACCACGA
CCACCACCACCACCACCACCAAACCTCCGAAGAAGCCAAAGA

consensusID : consensus_6250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [CCGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTCCAAGTAAGGTGAGCGAGTGGGCGGACAGGAAAGGGGAGGGAGTAGAGAAAAGGCAAAGAAACTAATCCATCCATTCGCTCGATTCGCCCCACCAACAGCCGCACAAATAAAGATTGCGAGATTGCGACCGTGTTTGCCAACGATGAAGTAGACTGTGTGTGTATGTGAGTGTATGTAAAAGAGAGAAAAAGAGATAGATAGAGAGAGAGAGAGAGGACTGGTAACAGAATCCAGCTAGGCCAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAACAAACATTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCATCCCGACGCGCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGGATAGTGGCGCGGAAGGGCGTGAGCAACGATGTGG]

[+] EMBL BM611019             [CCGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTCCAAGTAAGGTGAGCGAGTGGGCGGACAGGAAAGGGGAGGGAGTAGAGAAAAGGCAAAGAAACTAATCCATCCATTCGCTCGATTCGCCCCACCAACAGCCGCACAAATAAAGATTGCGAGATTGCGACCGTGTTTGCCAACGATGAAGTAGACTGTGTGTGTATGTGAGTGTATGTAAAAGAGAGAAAAAGAGATAGATAGAGAGAGAGAGAGAGGACTGGTAACAGAATCCAGCTAGGCCAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAACAAACATTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCATCCCGACGCGCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGGATAGTGGCGCGGAAGGGCGTGAGCAACGATGTGG]




>consensus_6250#1
CCGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTCCA
AGTAAGGTGAGCGAGTGGGCGGACAGGAAAGGGGAGGGAGTAGAGAAAAGGCAAAGAAAC
TAATCCATCCATTCGCTCGATTCGCCCCACCAACAGCCGCACAAATAAAGATTGCGAGAT
TGCGACCGTGTTTGCCAACGATGAAGTAGACTGTGTGTGTATGTGAGTGTATGTAAAAGA
GAGAAAAAGAGATAGATAGAGAGAGAGAGAGAGGACTGGTAACAGAATCCAGCTAGGCCA
AAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAACA
AACATTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGTTT
CGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCATCCCGACGC
GCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGTGA
GCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGGAT
AGTGGCGCGGAAGGGCGTGAGCAACGATGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6250#0      ------------------------------------------------------------
consensus_6250#1      CCGCGTTTTGGGGGTGGATACACCACCCATCCTCGAGGGCTGCACGTATTTTGTTTTCCA 60
                                                                                  

consensus_6250#0      -------------------------------CCGGGCGTTTTGGGGGTGGATACACCACC 29
consensus_6250#1      AGTAAGGTGAGCGAGTGGGCGGACAGGAAAGGGGAGGGAGTAGAGAAAAGGCAAAGAAAC 120
                                                       * * *  * * *    *  * *  * *

consensus_6250#0      CATCCTCGAGGGCTGCACGTATTTTGTTTTC--CAACCGCACAAATAAAGATTGCGAGAT 87
consensus_6250#1      TAATCCATCCATTCGCTCGATTCGCCCCACCAACAGCCGCACAAATAAAGATTGCGAGAT 180
                       *  *         ** **  *        *  ** ************************

consensus_6250#0      TGCGACCGTGTTTGCCAACGATGAAGTAGACCGTGGGTGTGTATGTGAGTGTATGTAAAA 147
consensus_6250#1      TGCGACCGTGTTTGCCAACGATGAAGTAGACTGTG--TGTGTATGTGAGTGTATGTAAAA 238
                      ******************************* ***  ***********************

consensus_6250#0      GAGAGAAAAAGAGATAGA----GAGAGACAGAGAGGACTGGTAACAGAATCCAGCTAGGC 203
consensus_6250#1      GAGAGAAAAAGAGATAGATAGAGAGAGAGAGAGAGGACTGGTAACAGAATCCAGCTAGGC 298
                      ******************    ****** *******************************

consensus_6250#0      CAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAA 263
consensus_6250#1      CAAAGGGGCTCCGCCAGCGTTGTGTTGTTGTTTGTGAAACAGTCTGCCAAAAAGGTGCAA 358
                      ************************************************************

consensus_6250#0      CAAACACTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGT 323
consensus_6250#1      CAAACATTTGCCAGCAGCAGTAGCAGCAAGATGCGGACGGCGCTCGTGTACTACGTGTGT 418
                      ****** *****************************************************

consensus_6250#0      TTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCACCCCGAC 383
consensus_6250#1      TTCGGTGCGATCTTGCTGGCCCGGGGCAGTGGAAGCGGGGCGCCACCACAGCATCCCGAC 478
                      ***************************************************** ******

consensus_6250#0      GCCCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGT 443
consensus_6250#1      GCGCCGAATGTGAACGTCACCGTGGCGAAGGTGATCGGTGCGATGCTGGCGGACGGTGGT 538
                      ** *********************************************************

consensus_6250#0      GAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGG 503
consensus_6250#1      GAGCGGGACAACGGGACGGTCAGCGCCCAGCAGGAGCACCACGCCGACCGGGGCCAGCGG 598
                      ************************************************************

consensus_6250#0      ATAGTGGCGCGGAAGGGCGTGAGCAACGATGTGGTCGTCCCGGTGAGGAGCGCCGTCCCG 563
consensus_6250#1      ATAGTGGCGCGGAAGGGCGTGAGCAACGATGTGG-------------------------- 632
                      **********************************                          

consensus_6250#0      GAGCACCCATCAACAGTCGGTGCGTCCGGGAACAGCACGGCCCACACACAGGCAAACGCA 623
consensus_6250#1      ------------------------------------------------------------
                                                                                  

consensus_6250#0      ACGACCGGCACGACGCTGCACGAGTCCACGTCTTCCTCCGGCGCGCACGGTTCCACCCTA 683
consensus_6250#1      ------------------------------------------------------------
                                                                                  

consensus_6250#0      CCTGCAATCACCAGTGCAAACGCGTCCTCAACCGCACCGAGCTCAGCAACGTCGACGTCA 743
consensus_6250#1      ------------------------------------------------------------
                                                                                  

consensus_6250#0      GCGGTACAGCCGCCACCACAATCAAGGCCGCCCACCAGTGCCAACGCAACAACGACCCAG 803
consensus_6250#1      ------------------------------------------------------------
                                                                                  

consensus_6250#0      CGAACGGTCGCGGCTAGCAGCACCAGTAGCAGCAGCACAACCACCACCACCACCACCACA 863
consensus_6250#1      ------------------------------------------------------------
                                                                                  

consensus_6250#0      TCAACCACAACGACTACAACGACAAGTACCACCACGACCACCACCACCACCACCACCAAA 923
consensus_6250#1      ------------------------------------------------------------
                                                                                  

consensus_6250#0      CCTCCGAAGAAGCCAAAGA 942
consensus_6250#1      -------------------