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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1019 fasta sequence
[CTGCTGGACTACGCGGCATCAGGGGACAGACGTGCTGCAAGCATGTTCCCTTCTGCAATTATTTGCTGTTAAAGACGAGCAGCATCTTAAAAGTGTTAATTTG-GATATTTCTTTTGGGCTGCAGTACGCTTTTATCGGTCAAGGTTGTAATTGTTGCTAACAAGCCGAAAGCAGAAACGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGTCTGCGTGTCATCATAGTGTTTCCAAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCGGGGGTGTAGGAGATCGTCTTCGCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGCAAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCACCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGTTTGTCGTGCGTAATGCCGGCAATCTGGTACCGCACGCAGAACACTTCCAGGACGAGTACTTTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCACATCATCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAACTGAAAGATCCCGAGTTTGCCTCGTTGGACAACCGGCGCATATCGCCGCTGCGGGCGTGGCTGTGCGAGCACGCCAACACGAGCCTGGCCAAGTTTCAAAACCTCAAAGAAATCGGGCTCGATAAGCCGCTCATCTTCTCGTCCGAAACGCCGCTCCGCAAGTTCGTCGCGTACATCGATCCGGAGAACAACTTTGCGATCGAGGACAAGCTGTCCCAGGTGAACACGCTGCAGCAGATCGAGAACGTGGCGTCGTACGGGTTTCTCAAGCGCCGGCTCGAATCGCACGATCTGCACATCCACGCGCTTTGGTTC]
[+] EMBL BX624272 [CTGCTGGACTACGCGGCATCAGGGGACAGACGTGCTGCAAGCATGTTCCCTTCTGCAATTATTTGCTGTTAAAGACGAGCAGCATCTTAAAAGTGTTAATTTG GATATTTCTTTTGGGCTGCAGTACGCTTTTATCGGTCAAGGTTGTAATTGTTGCTAACAAGCCGAAAGCAGAAACGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGTCTGCGTGTCATCATAGTGTTTCCAAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCGGGGGTGTAGGAGATCGTCTTCGCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCATGNNGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGCAAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCACCTGCATGGACAGTCGCATGATCCCGACCCNGTNTACCGA ]
[+] EMBL CNS08ZZW [ agggctcGTTTAGTTGTGA ATTTCTTTCATTAAATACTACGCTTTTATCGGTCAAGGTTGTAATTGTTGCTAACAAGCCGAAAGCAGAAACGATGCTCGTCCATTCGGTGACCCGTGAGGGGGGTGCCTGCGTGTCA A AGTGTTTCCAAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCTTGGGTGTACGAGATCGTCTTCGCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGCAAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCACCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGTTTGTCGTGCGTAATGCCGGCAATCTGGTACCGCACGCAGAACACTTCCAGGACGAGTACTTTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCACATCATCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAACTGAAAGATCCCGAGTTTGCCTCGTTGGACAACCGGCGCATATCGCCGCTGCGGGCGTGGCTGTGCGAGCACGCCAACACGAGCCTGGCCAAGTTTCAAAACCTCAAAGAAATCGGGCTCGATAAGCCGCTCATCTTCTCGTCCGAAACGCCGCTCCGCAAGTTCGTCGCGTACATCGATCCGGAGAACAACTTTGCGATCGAGGACAAGCTGTCCCAGGTGAACACGCTGCAGCAGATCGAGAACGTGGCGTCGTACGGGTTTCTCAAGCGCCGGCTCGAATCGCACGATCTGCACATCCACGCGCTTTGGTTC]
[+] EMBL BX614982 [ GCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGCAAATGGTGCACGAATTTCGGAAAGCTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCACCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGTCTGTCGTGCGTAATGCCGGCAATCTCGTACCGCACGCAGAACACTTCCAGGACGAGTACTTTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCATATCATCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAGCTGAAAGATCCCGAGTTTGCCTC ]
consensusID : consensus_6253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 642 fasta sequence
[AAGGGTTGGGAATAGGGGCGAGCTCGCGCCCAGCGTTGTACGCTCCCATCGGTCAAGGGTTGTAAATTGTTGCTAACAAGCCGAAAGCAGAAACGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGTCTGCGTGTCATCATAGTGTTTCCAAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCGGGGGTGTAGGAGATCGTCTTCGCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGCAAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCACCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGTTTGTCGTGCGTAATGCCGGCAATCTGGTACCGCACGCAGAACACTTCCAGGACGAGTACTTTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCACATCATCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAACTGAAAGATCCCGAGTTTGCCT]
[+] EMBL AL932777 [AAGGGTTGGGAATAGGGGCGAGCTCGCGCCCAGCGTTGTACGCTCCCATCGGTCAAGGGTTGTAAATTGTTGCTAACAAGCCGAAAGCAGAAACGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGTCTGCGTGTCATCATAGTGTTTCCAAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCGGGGGTGTAGGAGATCGTCTTCGCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCAT ]
[+] EMBL BM613734 [ ccggTGCGAATAGGGGCGAGCTCACGCTCAGCTTTGTACGCTTTTATCGGTCAA GGTTGT AATTGTTGCTAACAAGCCGAAAGCAGAAACGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGCCTGCGTGTCA A AGTGTTTCCAAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCTTGGGTGTACGAGATCGTCTTCGCGAGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTTTGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGCAAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCACCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGTTTGTCGTGCGTAATGCCGGCAATCTGGTACCGCACGCAGAACACTTCCAGGACGAGTACTTTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCACATCATCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAACTGAAAGATCCCGAGTTTGCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6253#0 CTGCTGGACTACGCGGCATCAGGGGACAGACGTGCTGCAAGCATGTTCCCTTCTGCAATT 60
consensus_6253#1 ------------------------------------------------------------
consensus_6253#0 ATTTGCTGTTAAAGACGAGCAGCATCTTAAAAGTGTTAATTTGGAT-ATTTCTTTTGGGC 119
consensus_6253#1 ---------------------------AAGGGTTGGGAATAGGGGCGAGCTCGCGCCCAG 33
* ** *** ** * **
consensus_6253#0 TGCAGTACGCTTTTATCGGTCAAGG-TTGTAA-TTGTTGCTAACAAGCCGAAAGCAGAAA 177
consensus_6253#1 CGTTGTACGCTCCCATCGGTCAAGGGTTGTAAATTGTTGCTAACAAGCCGAAAGCAGAAA 93
* ******* *********** ****** ***************************
consensus_6253#0 CGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGTCTGCGTGTCATCATAGTGTTTCC 237
consensus_6253#1 CGATGCTCGTCCATTCGGTGACCCGTGAGTAGTGTGTCTGCGTGTCATCATAGTGTTTCC 153
************************************************************
consensus_6253#0 AAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCGGGGGTGTAGGAGATCGTCTTCGCG 297
consensus_6253#1 AAGTGCCGTGTTTGTACGCCCGGGTGCGCTGCCTCGGGGGTGTAGGAGATCGTCTTCGCG 213
************************************************************
consensus_6253#0 AGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTT 357
consensus_6253#1 AGGAGCTGCTTCCGTAAGCCGATCCCACCCATCCACCCCAGTCACCCGGTCCAGTCGGTT 273
************************************************************
consensus_6253#0 TGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGC 417
consensus_6253#1 TGTGAGTCATGGAGCGTATATTGCGAGGCGTTATGCGTTACCGGCATACGACCCGCGAGC 333
************************************************************
consensus_6253#0 AAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCA 477
consensus_6253#1 AAATGGTGCAGGAATTTCGGAAAGTTCGTGACAATCCGCAGCCTAAAGCCGTGTTTTTCA 393
************************************************************
consensus_6253#0 CCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGT 537
consensus_6253#1 CCTGCATGGACAGTCGCATGATCCCGACCCGGTTTACCGAGACGCACGTCGGCGACATGT 453
************************************************************
consensus_6253#0 TTGTCGTGCGTAATGCCGGCAATCTGGTACCGCACGCAGAACACTTCCAGGACGAGTACT 597
consensus_6253#1 TTGTCGTGCGTAATGCCGGCAATCTGGTACCGCACGCAGAACACTTCCAGGACGAGTACT 513
************************************************************
consensus_6253#0 TTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCACATCA 657
consensus_6253#1 TTAGCTGCGAACCGGCCGCCCTAGAGTTGGGCTGTGTCGTGAACAACATCAAGCACATCA 573
************************************************************
consensus_6253#0 TCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAACTGAAAGATCCCG 717
consensus_6253#1 TCGTCTGCGGGCACAGCGATTGTAAAGCGATGAACTTGCTGTACAAACTGAAAGATCCCG 633
************************************************************
consensus_6253#0 AGTTTGCCTCGTTGGACAACCGGCGCATATCGCCGCTGCGGGCGTGGCTGTGCGAGCACG 777
consensus_6253#1 AGTTTGCCT--------------------------------------------------- 642
*********
consensus_6253#0 CCAACACGAGCCTGGCCAAGTTTCAAAACCTCAAAGAAATCGGGCTCGATAAGCCGCTCA 837
consensus_6253#1 ------------------------------------------------------------
consensus_6253#0 TCTTCTCGTCCGAAACGCCGCTCCGCAAGTTCGTCGCGTACATCGATCCGGAGAACAACT 897
consensus_6253#1 ------------------------------------------------------------
consensus_6253#0 TTGCGATCGAGGACAAGCTGTCCCAGGTGAACACGCTGCAGCAGATCGAGAACGTGGCGT 957
consensus_6253#1 ------------------------------------------------------------
consensus_6253#0 CGTACGGGTTTCTCAAGCGCCGGCTCGAATCGCACGATCTGCACATCCACGCGCTTTGGT 1017
consensus_6253#1 ------------------------------------------------------------
consensus_6253#0 TC 1019
consensus_6253#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||