cluster # 6254

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Anopheles gambiae
cluster # 6254 cluster # 6254 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6254#0 length = 1065 sequences # 4

consensus_6254#1 length = 640 sequences # 1

consensusID : consensus_6254#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1065
fasta sequence

                              [ATCGCCCGAGGTTTTTATTTCACCAACCGGCAGACCGGTACGTCATGATCGAGGATCGCCGGCTGGCCGACTTCTATGCCAACTTCCTGGGGAAGGTGCAGGAGTTTAGCCTGACGGTGGGGCGCGATGGAGCGACCCGACTGCACGACACGTGGACCATGCTGCCGTACAAGTGTGCCCAGCTAGAGTTTGCCACGGAAGCGCGGGATCGCATCCGGGCGTACTATCGCAGCGTGATGGACGAGCAGCGGGCGGTTTGCGAGCGGGACGAGGCACAGCACGCGGACACGTGGATATTCCCGCTGATCGAGATGGGACAGCTCGGCATACATCACGACAGCCTGGCGACGAAGCAGCTGCTGTCGGGTTGTTTGGCCGGCTCGCAGCTGCGGTTGGCGACGGGATACTTTAACCTAACGGAAACGTACATGAACACGCTGACGCACGAGTGCCAGGCACAGTGTAACATACTGATGGCGCACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCATACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGGTGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACTATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCATCGGTTCGTCCAACTTTGGCGAGCGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAATAACGCCACTCTGCAGCGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGACCACCGCCGAAACGGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTGTTTCGCAACTTTTTCTAATCTCGCCCCGCTTCCGCTGGCGGCCGGTCCGGGTCCGGCCGACAGCATCATTGCGCATCGAAGATGCCATACTCGTGAGTCCGCGCGAACAAACGCCTAACGTATCGAATACACGTGACAGTCCCGTTGGAGTTGTGATCAGTGTTAAGCCGACCAA]

[+] EMBL AL932765             [ATCGCCCGAGGTTTTTATTTCACCAACCGGCAGACCGGTACGTCATGATCGAGGATCGCCGGCTGGCCGACTTCTATGCCAACTTCCTGGGGAAGGTGCAGGAGTTTAGCCTGACGGTGGGGCGCGATGGAGCGACCCGACTGCACGACACGTGGACCATGCTGCCGTACAAGTGTGCCCAGCTAGAGTTTGCCACGGAAGCGCGGGATCGCATCCGGGCGTACTATCGCAGCGTGATGGACGAGCAGCGGGCGGTTTGCGAGCGGGACGAGGCACAGCACGCGGACACGTGGATATTCCCGCTGATCGAGATGGGACAGCTCGGCATACATCACGACAGCCTGGCGACGAAGCAGCTGCTGTCGGGTTGTTTGGCCGGCTCGCAGCTGCGGTTGGCGACGGGATACTTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX610129             [                                                                                                                                                                                                                                                                                                                   CGAGATGGGACAGCTCGGCATACATCACGACAGCCTGGCGACGAAGCAGCTGCTGTCGGGTTGTTTGGCCGGCTCGCAGCTGCGGTTGGCGACGGGATACTTTAACCTAACGGAAACGTACATGAACACGCTGACGCACGAGTGTCAGGCACAGTGTAACATACTGATGGCGCACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCATACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGGTGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACTATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCATCGGTTCGTCCAACTTTGGCGAGCGCTCGGTGAACCGCGATCTCGAGGCACAGATCTGCGTGGTCACGAATAACACCACACTGCAGCGCAAGCTCGAAGTCGAGTATCAAAATTTGCTCCAGCACGCGACCACCGCCGAAACGGAGCTCATCAACCGTCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTGTTTCGCAACTTTTTCTAATCTCGCCCCGCTT                                                                                                                                                ]
[+] EMBL BX617036             [                                                                                                                                                                                                                                                                                                                            ACAGCTCGGCATACATCACGACAGCCTGGCGACGAAGCAGCTGCTGTCGGGTTGTTTGGCCGGCTCGCAGCTGCGGTTGGCGACGGGATACTTTAACCTAACGGAAACGTACATGAACACGCTGACGCACGAGTGCCAGGCACAGTGTAACATACTGATGGCGCACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCATACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAGAGCCACCGGGTGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGTCTGTGGTACTATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCATCGGTTCGTCCAACTTTGGCGAGCGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAATAACGCCACTCTGCAGCGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGACCACCGCCGAAATGGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTGTTTCGCAACTTTTTCTAATCTCGCCCCACTTCCGCTGGCGGCCGGTCCGGGTCCGGCCGACAGCATCATTGCGCATCGAAGATGCCATACTCGTGAGTCCGCGCGAACAAACGCCTAACGTATCGAATACACGTGACAGTCCCGTTGGAGTTGTGATCAGTGTTAAGCCGACCAA]
[+] EMBL BX628871             [                                                                                                                                                                                                                                                                                                                                                                                                                                           CATGAACACGCTGACGAACGAGTGCCAGGCACAGTGTAACATACTGATGGCGCACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCATACTCCCTGCTGGCGCGCNAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGGTGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACTATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCATCGGTTCGTCCAACTTTGGCGAGCGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCG CGTCACGAATAACGCCNCTCTGCAACGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGACCACCGCCGAAACGGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTGTTTCGCAACTTTTTCTAATCTCGCCCCGCTTCCGCTGGCGGCCGGTCCGGG                                                                                                                            ]




>consensus_6254#0
ATCGCCCGAGGTTTTTATTTCACCAACCGGCAGACCGGTACGTCATGATCGAGGATCGCC
GGCTGGCCGACTTCTATGCCAACTTCCTGGGGAAGGTGCAGGAGTTTAGCCTGACGGTGG
GGCGCGATGGAGCGACCCGACTGCACGACACGTGGACCATGCTGCCGTACAAGTGTGCCC
AGCTAGAGTTTGCCACGGAAGCGCGGGATCGCATCCGGGCGTACTATCGCAGCGTGATGG
ACGAGCAGCGGGCGGTTTGCGAGCGGGACGAGGCACAGCACGCGGACACGTGGATATTCC
CGCTGATCGAGATGGGACAGCTCGGCATACATCACGACAGCCTGGCGACGAAGCAGCTGC
TGTCGGGTTGTTTGGCCGGCTCGCAGCTGCGGTTGGCGACGGGATACTTTAACCTAACGG
AAACGTACATGAACACGCTGACGCACGAGTGCCAGGCACAGTGTAACATACTGATGGCGC
ACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCAT
ACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGG
TGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACT
ATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCATCGGTTCGTCCAACTTTGGCGAGC
GCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAATAACGCCACTCTGC
AGCGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGACCACCGCCGAAACGG
AGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTGTTTCGCAACT
TTTTCTAATCTCGCCCCGCTTCCGCTGGCGGCCGGTCCGGGTCCGGCCGACAGCATCATT
GCGCATCGAAGATGCCATACTCGTGAGTCCGCGCGAACAAACGCCTAACGTATCGAATAC
ACGTGACAGTCCCGTTGGAGTTGTGATCAGTGTTAAGCCGACCAA

consensusID : consensus_6254#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [CCAAGAATCGGCACGAGGTACATGAACACGCTGACGAACGAGTGCCAGGCACAGTGTAACATACTGATGGCGCACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCATACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGGTGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACTATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCGATCGGTTCGTCCAACTTTGGCGAGCGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAATAACGCCACTCTGCAACGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGANCACCGCNCGAAACGGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTTTTTCGCAANTTTTTCTAATCTCGCCCCGGTTTCCGCTGGCGGCCGGTCCGGGTCCGGCCGACGGCGATCATTGCGCATCGAAGGATGCCATACTCGTGAGCCCGCGCGAACAAACTGCCTAACGTATCGAATTAACACGTTGACAGTCCGTTCGG]

[+] EMBL BX469846             [CCAAGAATCGGCACGAGGTACATGAACACGCTGACGAACGAGTGCCAGGCACAGTGTAACATACTGATGGCGCACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCATACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGGTGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACTATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCGATCGGTTCGTCCAACTTTGGCGAGCGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAATAACGCCACTCTGCAACGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGANCACCGCNCGAAACGGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTTTTTCGCAANTTTTTCTAATCTCGCCCCGGTTTCCGCTGGCGGCCGGTCCGGGTCCGGCCGACGGCGATCATTGCGCATCGAAGGATGCCATACTCGTGAGCCCGCGCGAACAAACTGCCTAACGTATCGAATTAACACGTTGACAGTCCGTTCGG]




>consensus_6254#1
CCAAGAATCGGCACGAGGTACATGAACACGCTGACGAACGAGTGCCAGGCACAGTGTAAC
ATACTGATGGCGCACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGT
ATCCCCGCAGCATACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGC
CAAAGCCACCGGGTGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAG
GGCCTGTGGTACTATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCGATCGGTTCGTC
CAACTTTGGCGAGCGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAA
TAACGCCACTCTGCAACGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGAN
CACCGCNCGAAACGGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGG
GACTTTTTCGCAANTTTTTCTAATCTCGCCCCGGTTTCCGCTGGCGGCCGGTCCGGGTCC
GGCCGACGGCGATCATTGCGCATCGAAGGATGCCATACTCGTGAGCCCGCGCGAACAAAC
TGCCTAACGTATCGAATTAACACGTTGACAGTCCGTTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6254#0      ATCGCCCGAGGTTTTTATTTCACCAACCGGCAGACCGGTACGTCATGATCGAGGATCGCC 60
consensus_6254#1      ------------------------------------------------------------
                                                                                  

consensus_6254#0      GGCTGGCCGACTTCTATGCCAACTTCCTGGGGAAGGTGCAGGAGTTTAGCCTGACGGTGG 120
consensus_6254#1      ------------------------------------------------------------
                                                                                  

consensus_6254#0      GGCGCGATGGAGCGACCCGACTGCACGACACGTGGACCATGCTGCCGTACAAGTGTGCCC 180
consensus_6254#1      ------------------------------------------------------------
                                                                                  

consensus_6254#0      AGCTAGAGTTTGCCACGGAAGCGCGGGATCGCATCCGGGCGTACTATCGCAGCGTGATGG 240
consensus_6254#1      ------------------------------------------------------------
                                                                                  

consensus_6254#0      ACGAGCAGCGGGCGGTTTGCGAGCGGGACGAGGCACAGCACGCGGACACGTGGATATTCC 300
consensus_6254#1      ------------------------------------------------------------
                                                                                  

consensus_6254#0      CGCTGATCGAGATGGGACAGCTCGGCATACATCACGACAGCCTGGCGACGAAGCAGCTGC 360
consensus_6254#1      ------------------------------------------------------------
                                                                                  

consensus_6254#0      TGTCGGGTTGTTTGGCCGGCTCGCAGCTGCGGTTGGCGACGGGATACTTTAACCTAACGG 420
consensus_6254#1      ----------------------------------------------CCAAGAATCGGCAC 14
                                                                    *    *     *  

consensus_6254#0      AAACGTACATGAACACGCTGACGCACGAGTGCCAGGCACAGTGTAACATACTGATGGCGC 480
consensus_6254#1      GAG-GTACATGAACACGCTGACGAACGAGTGCCAGGCACAGTGTAACATACTGATGGCGC 73
                       *  ******************* ************************************

consensus_6254#0      ACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCAT 540
consensus_6254#1      ACCCGAACGCCAACGGGTTCCTCGGAGCGAAAGGACCGGCGGGCGGTATCCCCGCAGCAT 133
                      ************************************************************

consensus_6254#0      ACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGG 600
consensus_6254#1      ACTCCCTGCTGGCGCGCAAGTTTCTCGAGATGCTGAAATCGTCCGGCCAAAGCCACCGGG 193
                      ************************************************************

consensus_6254#0      TGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACT 660
consensus_6254#1      TGGAGCTGCTCGAGTACGAACGACCCGGGTGGACGTACCACGCCAAGGGCCTGTGGTACT 253
                      ************************************************************

consensus_6254#0      ATCTACCCGACTCGTCCCTCCCGAACGTCACCCTC-ATCGGTTCGTCCAACTTTGGCGAG 719
consensus_6254#1      ATCTACCCGACTCGTCCCTCCCGAACGTCACCCTCGATCGGTTCGTCCAACTTTGGCGAG 313
                      *********************************** ************************

consensus_6254#0      CGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAATAACGCCACTCTG 779
consensus_6254#1      CGCTCGGTGAACCGCGACCTCGAGGCACAGATCTGCGTGGTCACGAATAACGCCACTCTG 373
                      ************************************************************

consensus_6254#0      CAGCGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGACCACCGCC-GAAAC 838
consensus_6254#1      CAACGCAAGCTCGAAACCGAGTATCAAAATTTGCTCCAGCACGCGANCACCGCNCGAAAC 433
                      ** ******************************************* ******  *****

consensus_6254#0      GGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTGTTTCGCAA 898
consensus_6254#1      GGAGCTCATCAACCGGCCGGTGCCCCGGTGGGTGCGTGCCGTCGTGGGACTTTTTCGCAA 493
                      *************************************************** ********

consensus_6254#0      CTTTTTCTAATCTCGCCCCG-CTTCCGCTGGCGGCCGGTCCGGGTCCGGCCGACAGC-AT 956
consensus_6254#1      NTTTTTCTAATCTCGCCCCGGTTTCCGCTGGCGGCCGGTCCGGGTCCGGCCGACGGCGAT 553
                       *******************  ******************************** ** **

consensus_6254#0      CATTGCGCATCGAAG-ATGCCATACTCGTGAGTCCGCGCGAACAAAC-GCCTAACGTATC 1014
consensus_6254#1      CATTGCGCATCGAAGGATGCCATACTCGTGAGCCCGCGCGAACAAACTGCCTAACGTATC 613
                      *************** **************** ************** ************

consensus_6254#0      GAAT--ACACGT-GACAGTCCCGTTGGAGTTGTGATCAGTGTTAAGCCGACCAA 1065
consensus_6254#1      GAATTAACACGTTGACAGTCCGTTCGG--------------------------- 640
                      ****  ****** ********  * **