cluster # 6282

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Anopheles gambiae
cluster # 6282 cluster # 6282 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6282#0 length = 1050 sequences # 4

consensus_6282#1 length = 309 sequences # 1

consensusID : consensus_6282#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1050
fasta sequence

                              [GCGTGCTGTGAGTTTCAGA-AGC-TG-AGTGGTGCGTGTCCGTGCTGTCTATCCAGCTTGCTGGTTCGAAGCTTCGCTAAAGATCAAATGCAATGCGTTTTCTTAGTAACGCCGTACGTTACTGCACTTAGCAAAAAACAAAAAGAAAACTTCCCCCGTGACTGAGAATTACAAGCAATGCCGTACTTACACATCACACTTAAGAAAGATAGAGAGAGAGAGAGGATAGGATGAAGTGAAAATTAAAGAAGACGAATCGTTCTATTATATTTGTAAGAAAATTCCACTTATGAAATCAAAGCGAAGAGAAACCAAACACGAAGAAAAAAGCAAATAAAAACAAATAGAAAAGGCAAAGGTTTGAAGTGAAATATAGTGTAAAACTATCTACGGCGGAAATCAAAATGTGAACATGAAATGTAAACGAAAGAACTGAACCAGAAGCAACAGAATAGCTAGCGGCGAGGGAACTGTGTGAGCAGAAAACGGGAGGAACGAACGAAAGAATGGTGGTTGAGCAATTAGATAAAGACGAAGAAAAGAAAAGAAAAAAAAAAACCTAGGCGTCTAGCAATTATTTTGCTTTGCGAAACATTCGTCCGTTGTGAAATGTGATGGCGCCCGCGTAAGGGCGGGTTGTCCAGAAACTATACGCGCTAAACCCCACACCCCGTCGGCCGGAGGTCCTTGTGTGTGTGAGAGTTTTGTACATAGGATTATTGTTATTTACACTATTATTGTAATAATAATTATTATTATATTACTATCACGGTTGTTCGGCAGCAAACTCTCTATCCATTGCGATTGTGTTTTCTCCCTCCTCGGTACGCCGATAATCCACCGCGGCCACGCGACTTAAGCCACAGAGACAAGGATAGAAAGGATGAGTGTGGAAAGAATGAAATGAAATGCAACTGTGTTCCTCTACCCCCAGTGTTAGCAGAAGGATAGTGCAACTGAAACCGATCCACGCGTTATTAGTGCGATCCACGCGAACTGTAGTACATCACATCACACATTAAGGTTTTTTGGTAGTTCACACATAATTTTGGT]

[-] EMBL BM621789             [GCGTGCTGTGAGTTTCAGACAGCATGTAGTGGTGCGTGTCCGTGCTGTCTATCCAGCTTGCTGGTTCGAAGCTTCGCTAAAGATCAAATGCAATGCGTTTTCTTAGTAACGCCGTACGTTACTGCACTTAGCAAAAAACAAAAAGAAAACTTCCCCCGTGACTGAGAATTACAAGCAATGCCGTACTTACACATCACACTTAAGAAAGATAGAGAGAGAGAGAGGATAGGATGAAGTGAAAATTAAAGAAGACGAATCGTTCTATTATATTTGTAAGAAAATTCCACTTATGAAATCAAAGCGAAGAGAAACCAAACACGAAGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM621506             [           ccgggAGA AGC TG AACGCTTCGTGGACGTGTTGTCTATTCAGCTTGCTGGTTCGAAGCTTCGCTAAAGATCAAATGCAATGCGTTTTCTTAGTAACGCCGTACGTTACTGCACTTAGCAAAAAACAAAAAGAAAACTTCCCCCGTGACTGAGAATTAAAAGCAATGCCGTACTTACACATCACACTGAAGAAAGATAGAGAGAGAGAGAGGATAGGATGAAGTGAAAATTAAAGAAGACGAATCGTTCTATTATATTTGTAAGAAAATTCCACTTATGAAATCAAAGCGAAGAGAAACCAAACACGAAGAAAAAAGCAAATAAAAACAAATAGAAAAGGCAAAGGTTTGAAGTGAAATATAGTGTAAAACTATCTACGGCGGAAATCAAAATGTGAACATGAAATGTAAACGAAAGAACTGAACCAGAAGCAACAGAATAGCTAGCGGCGAGGGAACTGTGTGAGCAGAAAACGGGAGGAACGAACGAAAGAATGGTGGTTGAGCAATTAGATAAAGACGAAGAAAAGAAAAGAAAAAAAAAAACCTAGGCGTCTAGCAATTATTTTGCTTTGCGAAACATTCGTCCGTTGTGAAATGTGATGGCGCCCGCGTAAGGGCGGGTTGTCCAGAAACTATACGCGCTAAACCCCACACCCCGTCGGCCGGAGGTCCTTGTGTGTGTG                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX626245             [                                                                                                                                                                                                                                                                                                                                                                GCAAAGGTTTGAAGTGAAATATAGTGTAAAACTATCTACGGCGGAAATCAAAATGTGAACATGAAATGTAAACGAAAGAACTGAACCAGAAGCAACAGAATAGCTAGCGGCGAGGGAACTGTGTGAGCAGAAAACGGGAGGAACGAACGAAAGAATGGTGGTTGAGCAATTAGATAAAGACGAAGAAAAGAAAAGAAAAAAANAAACCTAGGCGTCTAGCAATTATTTTGCTTTGCGAAACATTCGTCCGTTGTGAAATGTGATGGCGCCCGCGTAAGGGCGGGTTGTCCAGAAACTATACGCGCTAAACCCCACACCCCGTCGGCCGGAGGTCCTTGTGTGTGTGAGAGTTTTGTACATAGGATTATTGTTATTTACACTATTATTGTAATAATAATTATTATTATATTACTATCACGGTTGTTCGGCAGCAAACTCTCTATCCATTGCGATTGTGTTTTCTCCCTCCTCGGTACGCCGATAATCCACCGCGGCCACGCGACTTAAGCCACAGAGACAAGGATAGAAAGGATGAGTGTGGAAAGAATGAAATGAAATGCAACTGTGTTCCTCTACCCCCAGTGTTAGCAGAAGGATAGTGCAACTGAAACCGATCCACGCGTTATTAGTGCGATCCACGCGAACTGTA                                                    ]
[+] EMBL BX616483             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTGAGAGTTTTGTACATAGGATTATTGTTATTTACACTATTATTGTAATAATAATTATTATTATATTACTATCACGGTTGTTCGGCAGCAAACTCTCTATCCATTGCGATTGTGTTTTCTCCCTCCTCGGTACGCCGATAATCCACCGCGGCCACGCGACTTAAGCCACAGAGACAAGGATAGAAAGGATGAGTGTGGAAAGAATGAAATGAAATGCAACTGTGTTCCTCTACCCCCAGTGTTAGCAGAAGGATAGTGCAACTGAAACCGATCCACGCGTTATTAGTGCGATCCACGCGAACTGTAGTACATCACATCACACATTAAGGTTTTTTGGTAGTTCACACATAATTTTGGT]




>consensus_6282#0
GCGTGCTGTGAGTTTCAGAAGCTGAGTGGTGCGTGTCCGTGCTGTCTATCCAGCTTGCTG
GTTCGAAGCTTCGCTAAAGATCAAATGCAATGCGTTTTCTTAGTAACGCCGTACGTTACT
GCACTTAGCAAAAAACAAAAAGAAAACTTCCCCCGTGACTGAGAATTACAAGCAATGCCG
TACTTACACATCACACTTAAGAAAGATAGAGAGAGAGAGAGGATAGGATGAAGTGAAAAT
TAAAGAAGACGAATCGTTCTATTATATTTGTAAGAAAATTCCACTTATGAAATCAAAGCG
AAGAGAAACCAAACACGAAGAAAAAAGCAAATAAAAACAAATAGAAAAGGCAAAGGTTTG
AAGTGAAATATAGTGTAAAACTATCTACGGCGGAAATCAAAATGTGAACATGAAATGTAA
ACGAAAGAACTGAACCAGAAGCAACAGAATAGCTAGCGGCGAGGGAACTGTGTGAGCAGA
AAACGGGAGGAACGAACGAAAGAATGGTGGTTGAGCAATTAGATAAAGACGAAGAAAAGA
AAAGAAAAAAAAAAACCTAGGCGTCTAGCAATTATTTTGCTTTGCGAAACATTCGTCCGT
TGTGAAATGTGATGGCGCCCGCGTAAGGGCGGGTTGTCCAGAAACTATACGCGCTAAACC
CCACACCCCGTCGGCCGGAGGTCCTTGTGTGTGTGAGAGTTTTGTACATAGGATTATTGT
TATTTACACTATTATTGTAATAATAATTATTATTATATTACTATCACGGTTGTTCGGCAG
CAAACTCTCTATCCATTGCGATTGTGTTTTCTCCCTCCTCGGTACGCCGATAATCCACCG
CGGCCACGCGACTTAAGCCACAGAGACAAGGATAGAAAGGATGAGTGTGGAAAGAATGAA
ATGAAATGCAACTGTGTTCCTCTACCCCCAGTGTTAGCAGAAGGATAGTGCAACTGAAAC
CGATCCACGCGTTATTAGTGCGATCCACGCGAACTGTAGTACATCACATCACACATTAAG
GTTTTTTGGTAGTTCACACATAATTTTGGT

consensusID : consensus_6282#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence

                              [GACCCACGCGTCCGCGCCGTACGTTACTGCACTTAGCAAAAAACTAAAAGAAAACTTCCCCCGTGACTGAGAATTAAAAGCAATGCCGTACTTACACATCACACTGAAGAAAGATAGAGAGAGAGAGAGGATAGGATGAAGTGAAAATTAAAGAAGACGAATCGTTCTATTATATTTGTAAGAAAATTCCACTTATGAAATCAAAGCGAAGAGAAACCAAACACGAAGAAAAAAGCAAATAAAAACAAATATATTAAGGCAAAGGTTTGAAGTGAAAAAAAAAAAAAAAAAATTTTACCCCCCCCCCCC]

[+] EMBL BM641263             [GACCCACGCGTCCGCGCCGTACGTTACTGCACTTAGCAAAAAACTAAAAGAAAACTTCCCCCGTGACTGAGAATTAAAAGCAATGCCGTACTTACACATCACACTGAAGAAAGATAGAGAGAGAGAGAGGATAGGATGAAGTGAAAATTAAAGAAGACGAATCGTTCTATTATATTTGTAAGAAAATTCCACTTATGAAATCAAAGCGAAGAGAAACCAAACACGAAGAAAAAAGCAAATAAAAACAAATATATTAAGGCAAAGGTTTGAAGTGAAAAAAAAAAAAAAAAAATTTTACCCCCCCCCCCC]




>consensus_6282#1
GACCCACGCGTCCGCGCCGTACGTTACTGCACTTAGCAAAAAACTAAAAGAAAACTTCCC
CCGTGACTGAGAATTAAAAGCAATGCCGTACTTACACATCACACTGAAGAAAGATAGAGA
GAGAGAGAGGATAGGATGAAGTGAAAATTAAAGAAGACGAATCGTTCTATTATATTTGTA
AGAAAATTCCACTTATGAAATCAAAGCGAAGAGAAACCAAACACGAAGAAAAAAGCAAAT
AAAAACAAATATATTAAGGCAAAGGTTTGAAGTGAAAAAAAAAAAAAAAAAATTTTACCC
CCCCCCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6282#0      GCGTGCTGTGAGTTTCAGAAGCTGAGTGGTGCGTGTCCGTGCTGTCTATCCAGCTTGCTG 60
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      GTTCGAAGCTTCGCTAAAGATCAAATGCAATGCGTTTTCTTAGTAACGCCGTACGTTACT 120
consensus_6282#1      --------------------------------GACCCACGCGTCCGCGCCGTACGTTACT 28
                                                            *       **************

consensus_6282#0      GCACTTAGCAAAAAACAAAAAGAAAACTTCCCCCGTGACTGAGAATTACAAGCAATGCCG 180
consensus_6282#1      GCACTTAGCAAAAAACTAAAAGAAAACTTCCCCCGTGACTGAGAATTAAAAGCAATGCCG 88
                      **************** ******************************* ***********

consensus_6282#0      TACTTACACATCACACTTAAGAAAGATAGAGAGAGAGAGAGGATAGGATGAAGTGAAAAT 240
consensus_6282#1      TACTTACACATCACACTGAAGAAAGATAGAGAGAGAGAGAGGATAGGATGAAGTGAAAAT 148
                      ***************** ******************************************

consensus_6282#0      TAAAGAAGACGAATCGTTCTATTATATTTGTAAGAAAATTCCACTTATGAAATCAAAGCG 300
consensus_6282#1      TAAAGAAGACGAATCGTTCTATTATATTTGTAAGAAAATTCCACTTATGAAATCAAAGCG 208
                      ************************************************************

consensus_6282#0      AAGAGAAACCAAACACGAAGAAAAAAGCAAATAAAAACAAATAGAA-AAGGCAAAGGTTT 359
consensus_6282#1      AAGAGAAACCAAACACGAAGAAAAAAGCAAATAAAAACAAATATATTAAGGCAAAGGTTT 268
                      ******************************************* *  *************

consensus_6282#0      GAAGTGAAATATAGTGTAAAACTATCT-ACGGCGGAAATCAAAATGTGAACATGAAATGT 418
consensus_6282#1      GAAGTGAAAAAAAAAAAAAAAAAATTTTACCCCCCCCCCCC------------------- 309
                      ********* * *    ****  ** * **  *      *                    

consensus_6282#0      AAACGAAAGAACTGAACCAGAAGCAACAGAATAGCTAGCGGCGAGGGAACTGTGTGAGCA 478
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      GAAAACGGGAGGAACGAACGAAAGAATGGTGGTTGAGCAATTAGATAAAGACGAAGAAAA 538
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      GAAAAGAAAAAAAAAAACCTAGGCGTCTAGCAATTATTTTGCTTTGCGAAACATTCGTCC 598
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      GTTGTGAAATGTGATGGCGCCCGCGTAAGGGCGGGTTGTCCAGAAACTATACGCGCTAAA 658
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      CCCCACACCCCGTCGGCCGGAGGTCCTTGTGTGTGTGAGAGTTTTGTACATAGGATTATT 718
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      GTTATTTACACTATTATTGTAATAATAATTATTATTATATTACTATCACGGTTGTTCGGC 778
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      AGCAAACTCTCTATCCATTGCGATTGTGTTTTCTCCCTCCTCGGTACGCCGATAATCCAC 838
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      CGCGGCCACGCGACTTAAGCCACAGAGACAAGGATAGAAAGGATGAGTGTGGAAAGAATG 898
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      AAATGAAATGCAACTGTGTTCCTCTACCCCCAGTGTTAGCAGAAGGATAGTGCAACTGAA 958
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      ACCGATCCACGCGTTATTAGTGCGATCCACGCGAACTGTAGTACATCACATCACACATTA 1018
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      AGGTTTTTTGGTAGTTCACACATAATTTTGGT 1050
consensus_6282#1      --------------------------------