cluster # 6289

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Anopheles gambiae
cluster # 6289 cluster # 6289 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6289#0 length = 565 sequences # 4

consensus_6289#1 length = 362 sequences # 1

consensusID : consensus_6289#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 565
fasta sequence

                              [CCGCCCACGCGTCCGCCCCCGCGTGCTGCGGCGTGAATTTTCCAGAAAAAGTATCTCGAATTACA--ACACTTTTCCACCATGGATGATGGCGATTACGATAACGATGATGTCGGTGGGGATGAGTTCGACGATGTCGAGGAGGACGACAACATTGACGAGCTGAACCAGGAGGAGGACGGGGACAACATCGAGATCATCAATCCGGGCCAGGCCGGCGGTGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTCGGTACGCGCGCCCTGCAGATTGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATTATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAAAGAGAGTGTTAAGCATGGGGGGTTTTAACCATTGTATATTATATTAAGGTGGAAAAATACACAGTCTTCTCTACACAGGCTGCAAACAGG]

[+] EMBL BM647960             [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGCGTGAATTTTCCAGAAAAAGTATCTCGAATTACA  ACACTTTTCCACCATGGATGATGGCGATTACGATAACGATGATGTCGGTGGGGATGAGTTCGACGATGTCGAGGAGGACGACAACATTGACGAGCTGAACCAGGAGGAGGACGGGGACAACATCGAGATCATCAATCCGGGCCAGGCCGGCGGTGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTCGGTACGCGCGCCCTGCAGATTGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATTATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAAAGAGAGTGTTAAGCATGGGGGGTTTTAACCATTGTATATTATATTAAGGTGGAAAAta                                ]
[+] EMBL BM619405             [                  CCG GTGCTGCGGCGTGAATTTTCCAGAAAAAGTATCTTGAATTTCAGCACACTTTTCCACCATGGATGATGGCGATTACGATAACGATGATGTCGGTGGGGATGAGTTCGATGATGTCGAGGAGGACGACAACATTGACGAGCTGAACCAGGAGGAGGATGGGGATAACATCGAGATCATCAATCCGGGCCAGGCCGGTGGCGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTTGGTACGCGCGCCCTGCAGATCGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATCATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAATGAGAGTGTTAAGCAGGGGGGGTTTTAACCATTGTATATTATATTAAGGTGGAAAAATACACAGTCTTCTCTACACAGGCTGCAAACAGG]
[+] EMBL BM592172             [            ccgggacgGCGTGCTGCGGCGTGAATTTTCCAGAAAAAGTATCTTGAATTTCAGCACACTTTTCCACCATGGATGATGGCGATTACGATAACGATGATGTCGGTGGGGATGAGTTCGATGATGTCGAGGAGGACGACAACATTGACGAGCTGAACCAGGAGGAGGATGGGGATAACATCGAGATCATCAATCCGGGCCAGGCCGGTGGCGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTTGGTACGCGCGCCCTGCAGATCGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATCATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAATGAGAGTGTTAAGCAGGGGGGGTTTTAACCATTGTATATTATATTAAGGTGGAAAAATACACAGTCTTCTCTACACAGGCTGC       ]
[+] EMBL BM601696             [                                 ccgATTTTCCAGAAAAAGTATCTCGAATTACA  ACACTTTTCCACCATGGATGATGGCGATTACGATAACGATGATGTCGGTGGGGATGAGTTCGACGATGTCGAGGAGGACGACAACATTGACGAGCTGAACCAGGAGGAGGACGGGGACAACATCGAGATCATCAATCCGGGCCAGGCCGGCGGTGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTCGGTACGCGCGCCCTGCAGATTGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATTATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAAAGAGAGTGTTAAGCATGGGGGGTTTTAACCATTGTATATTATATTAAGGTGG AAAATACACAGTCTTCTCTACACAGGCTGCAAACAGG]




>consensus_6289#0
CCGCCCACGCGTCCGCCCCCGCGTGCTGCGGCGTGAATTTTCCAGAAAAAGTATCTCGAA
TTACAACACTTTTCCACCATGGATGATGGCGATTACGATAACGATGATGTCGGTGGGGAT
GAGTTCGACGATGTCGAGGAGGACGACAACATTGACGAGCTGAACCAGGAGGAGGACGGG
GACAACATCGAGATCATCAATCCGGGCCAGGCCGGCGGTGGTGTGCCGAAGAACAAGCGC
ATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTCGGTACGCGCGCCCTG
CAGATTGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAG
ATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATTATCCGGCGCTACCTGCCC
GACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAAAGAGA
GTGTTAAGCATGGGGGGTTTTAACCATTGTATATTATATTAAGGTGGAAAAATACACAGT
CTTCTCTACACAGGCTGCAAACAGG

consensusID : consensus_6289#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [TCGACCCACGCGTCCGGGGGATAACATCGAGATCATCAATCCGGGCCAGGCCGGTGGCGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTTGGTACGCGCGCCCTGCAGATCGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATCATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAATGAGAGTGTTAAGCAGGGGGGGTTTTAACCATTGTATATTATATTAAG]

[+] EMBL BM639766             [TCGACCCACGCGTCCGGGGGATAACATCGAGATCATCAATCCGGGCCAGGCCGGTGGCGGTGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTTGGTACGCGCGCCCTGCAGATCGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATCATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAATGAGAGTGTTAAGCAGGGGGGGTTTTAACCATTGTATATTATATTAAG]




>consensus_6289#1
TCGACCCACGCGTCCGGGGGATAACATCGAGATCATCAATCCGGGCCAGGCCGGTGGCGG
TGTGCCGAAGAACAAGCGCATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGT
GCTTGGTACGCGCGCCCTGCAGATCGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGG
CGAGACGGACCCGCTGCAGATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCAT
CATCCGGCGCTACCTGCCCGACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTAT
AATCGACCATTAAATGAGAGTGTTAAGCAGGGGGGGTTTTAACCATTGTATATTATATTA
AG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6289#0      CCGCCCACGCGTCCGCCCCCGCGTGCTGCGGCGTGAATTTTCCAGAAAAAGTATCTCGAA 60
consensus_6289#1      ------------------------------------------------------------
                                                                                  

consensus_6289#0      TTACAACACTTTTCCACCATGGATGATGGCGATTACGATAACGATGATGTCGGTGGGGAT 120
consensus_6289#1      ------------------------------------------------------------
                                                                                  

consensus_6289#0      GAGTTCGACGATGTCGAGGAGGACGACAACATTGACGAGCTGAACCAGGAGGAGGACGGG 180
consensus_6289#1      ---------------------------------------TCGACCCACGCGTCCG--GGG 19
                                                               ** *** * *   *  ***

consensus_6289#0      GACAACATCGAGATCATCAATCCGGGCCAGGCCGGCGGTGGTGTGCCGAAGAACAAGCGC 240
consensus_6289#1      GATAACATCGAGATCATCAATCCGGGCCAGGCCGGTGGCGGTGTGCCGAAGAACAAGCGC 79
                      ** ******************************** ** *********************

consensus_6289#0      ATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTCGGTACGCGCGCCCTG 300
consensus_6289#1      ATCACGACCAAGTACATGACGAAGTACGAGCGAGCGCGTGTGCTTGGTACGCGCGCCCTG 139
                      ******************************************** ***************

consensus_6289#0      CAGATTGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAG 360
consensus_6289#1      CAGATCGCCATGTGCGCACCGATCATGGTGGAGCTGGAGGGCGAGACGGACCCGCTGCAG 199
                      ***** ******************************************************

consensus_6289#0      ATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATTATCCGGCGCTACCTGCCC 420
consensus_6289#1      ATAGCGATGAAGGAGCTGAAGCAGCGCAAAATTCCCATCATCATCCGGCGCTACCTGCCC 259
                      ***************************************** ******************

consensus_6289#0      GACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAAAGAGA 480
consensus_6289#1      GACTCGTCGTACGAGGACTGGAGCATCGACGAGCTAATTATAATCGACCATTAAATGAGA 319
                      ******************************************************* ****

consensus_6289#0      GTGTTAAGCATGGGGGGTTTTAACCATTGTATATTATATTAAGGTGGAAAAATACACAGT 540
consensus_6289#1      GTGTTAAGCAGGGGGGGTTTTAACCATTGTATATTATATTAAG----------------- 362
                      ********** ********************************                 

consensus_6289#0      CTTCTCTACACAGGCTGCAAACAGG 565
consensus_6289#1      -------------------------