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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1513 fasta sequence
[CCAACAGTTTCTGCACGACTTCTGTTTCTGTACCCAAAATCATATGCCCTTTTTGCATATATGGTCCAGAAACTAGCGTACACCAAGGGTAGAATTTTTGCTAACAACATACGCAGTGTGCAGTGATAACGAGACGCTCACAGTCCAGTGTTTGGGCCTGAAACGGCAACGCAAGAACCATCCACGAGAAACAACACGCACTGATCGGTCAAAGAGTGGCGAACTCCTTACTTACCTTTCGCAAACTGCCTTAATCAATCTACCACACACTCCCATCACAGGACGCCCTCCGCAAAGAAAGGGCTGAAGCGTGTCACGTTAACAATACCAAAAACCCGTACCGGCGTGCCCGTTCCATTCGTCCAATCGCAAAACGGCAGCAAATGTCACAGCATCGTTAGAAGCAACCCTAGTTCTTTCGCGTAAAATGTCCTCACCGGATCTGCTGCTGCCGAACGAACCGAGCCTGTCGGTGGACGAAAATGTGCCAATAGATTGGCAACCCATCACACTGACACTGGTGGAGTATCCCAAAGGAGATTTCGTCGGCAAATTGCTAGCCTGGATCAGTCTGGCCCCACTCGGCATTGGTGCGGGGTTCGTCGCGCTGATACTGTTCCGAAGAGACTTGCACACCATCGTGTTCTTTCTAGGGACGCTGGTGAACGAATGTCTTAACATCCTGCTGAAACACTGGATCCAGGAGCCACGGCCAGTGTCGCGGGCACAAATTTGGACCGAGTACGGCATGCCTTCATCGCACTCACAGTTTATGTGCTTTTTTTTCCACCTACGTACTCCTGTTTATCTTCATAAGACTGCATCATATAAATAATAGTAATAGTGCCCGGTTCGAGCGACTAGTACGATTGCTGGTGCTTGCCATCTGTTGGACGGCCGCATTTCTCGTCTGCTTCGGCAGGATCTACCTGCTCTATCACACACTTTCCCAAGTGCTGATCGGTGCCCTCGTCGGTACGGTAATGGGTGCGCTGTGGTTCCTGCTGACGCACTTCGTCCTCACGCCCTACTTTCCGATGGTCGTGCTGTGGCGCGTGTCGGAACTGTTCCTGCTGCGGGACACCACGCTCATACCGAACATACTGTGGTTCGAGTATACCGTTACGCGGCACGAAGCGCGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGACGGCGATACTCGTACATCAAATAGCATTAACAAGTAGGCGACGCGTGTGCTATGGACACTCTACTTTGCAAAGCGCAGATTGCCCCTGTCATACGGACGGAATACCGGGAAGGGCCGGCAAATCACCGATGGTGCAATAGACAGCAACATTTTTGGACTTTTCTGTCCCTGTGTGGATGTGGAGAAGCTAAACAGTCGGAGAGAGAGAGAGAGGTAGAGAGAGTGTTCCGATGGTCAGCATAGGAACAACAATCGAGTCATACAAACATCCACAAGCTGTGGATGTGCTTTAGAGAATAAAAATAAGAACATAT]
[+] EMBL CNS08MIE [CCAACAGTTTCTGCACGACTTCTGTTTCTGTACCCAAAATCATATGCCCTTTTTGCATATATGGTCCAGAAACTAGCGTACACCAAGGGTAGAATTTTTGCTAACAACATACGCAGTGTGCAGTGATAACGAGACGCTCACAGTCCAGTGTTTGGGCCTGAAACGGCAACGCAAGAACCATCCACGAGAAACAACACGCACTGATCGGTCAAAGAGTGGCGAACTCCTTACTTACCTTTCGCAAACTGCCTTAATCAATCTACCACACACTCCCATCACAGGACGCCCTCCGCAAAGAAAGGGCTGAAGCGTGTCACGTTAACAATACCAAAAACCCGTACCGGCGTGCCCGTTCCATTCGTCCAATCGCAAAACGGCAGCAAATGTCACAGCATCGTTAGAAGCAACCCTAGTTCTTTCGCGTAAAATGTCCTCACCGGATCTGCTGCTGCCGAACGAACCGAGCCTGTCGGTGGACGAAAATGTGCCAATAGATTGGCAACCCATCACACTGACACTGGTGGAGTATCCCAAAGGAGATTTCGTCGGCAAATTGCTAGCCTGGATCAGTCTGGCCCCACTCGGCATTGGTGCGGGGTTCGTCGCGCTGATACTGTTCCGAAGAGACTTGCACACCATCGTGTTCTTTCTAGGGACGCTGGTGAACGAATGTCTTAACATCCTGCTGAAACACTGGATCCAGGAGCCACGGCCAGTGTCGCGGGCACAAATTTGGACCGAGTACGGCATGCCTTCATCGCACTCACAGTTTATGTGCTTTTTTTTCCACCTACGTACTCCTGTTTATCTTCATAAGACTGCATCATATAAATAATAGTAATAGTGCCCGGTTCGAGCGACTAGTACGATTGCTGGTGCTTGCCATCTGTTGGACGGCCGCATTTCTCGTCTGCTTCGGCAGGATCTACCTGCTCTATCACACACTTTCCCAAGTGCTGATCGGTGCCCTCGTCGGTACG ]
[-] EMBL CNS08MIF [ GTGCGGGGTTCGTCGCGCTGATACTGTTCCGAAGAGACTTGCACACCATCGTGTTCTTTCTAGGGACGCTGGTGAACGAATGTCTTAACATCCTGCTGAAAAACTGGATCCAGGAGCCACGGCCAGTGTCGCGGGCACAAATTTGGACCGAGTACGGCATGCCTTCATCGCACTCACAGTTTATGTGCTTTTTTTTCCACCTACGTACTCCTGTTTATCTTCATAAAACTGCATCATATAAATAATAGTAATAGTGCCCGGTTCGAGCGACTAGTACGATTGCTGGTGCTTGCCATCTGTTGGACGGCCGCATTTCTCTTCTGCTTCGGCAGGATCTACCTGCTCTATAACACACTTTCCCAAGTGCTGATCGGTGCCCTCGTCGGTACGGTAATGGGTGCGCTGTGGTTCCTGCTAACGCACTTCGTCCTCACGCCCTACTTTCCGATGGTCGTGCTTTGGCGCGTGTCGGAACTGTTCCTGCTGCGGGACACCACGCTCATACCGAACATACTGTGGTTCGAGTATACCGTTACGCGGCACGAAGCGCGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGACGGCGATACTCGTACATCAAATAGCATTAACAAGTAGGCGACGCGTGTGCTATGGACACTCTACTTTGCAAAGCGCAGATTGCCCCTGTCATACGGACGGAATACCGGGAAGGGCCGGCAAATCACCGATGGTGCAATAGACAGCAACATTTTTGGACTTTTCTGTCCCTGTGTGGATGTGGAGAAGCTAAACAGTCGGAGAGAGAGAGAGAGGTAGAGAGAGTGTTCCGATGGTCAGCATAGGAACAACAATCGAGTCATACAAACATCCACAAGCTGTGGATGTGCTTTAGAGAATAAAAATAAGAACATAT]
[+] EMBL BX602618 [ CGAATGTCTTAACATCCTGCTGAAACACTGGATCCAGGAGCCACGGCCAGTGTCGCGGGCACAAATTTGGACCGAGTACGGCATGCCTTCATCTCACTCACAGTTTATGTGC TTTTTTGCCACCTACGTACTCCTGTTTATCTTCATAAGACTGCATCATATAAATAATAGTAATAGTGCCCGGTTCGAGCGACTAGTACGATTGCTGGTACTTGCCATCTGTTGGACGGCCGCATTTCTCGTCTGCTTCGGCAGGATCTACCTGCTCTATCACACACTTTCCCAAGTGCTGATCGGTGCCCTCGTCGGTACGGTAATGGGTGCGCTGTGGTTCCTGCTGACGCACTTCGTCCTCACGCCCTACTTTCCGATGGTCGTGCTGTGGCGCGTGTCGGAACTGTTCCTGCTGCGGGACACCACGCTCATACCGAACATACTGTGGTTCGAGTATACCGTTACGCGGCACGAAGCGCGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGACGGCGAT ]
[+] EMBL BM654445 [ CCGAAGTGCTGATCGGTGCCCTCGTCGGTACGGTAATGGGTGCGCTGTGGTTCCTGCTGACGCACTTCATCCTCACGCCCTACTTTCCGATGGTCGTGCTGTGGCGCGTGTCGGAACTGTTCCTGCTGCGGGACACCACGCTCATACCGAACATACTGTGGTTCGAGTATACCGTTACGCGGCACGAAGCGCGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGACGGCGATACTCGTACATCAAATAGCATTAAAAAGTAGGCGACGCGTGTGCTATGGACACTCTACTTTGCAAAGCGCAAATTGCCCCTGTCATACGGTCGGAATACCGGGAAGGGCCAGCAAATCACCGATGGTGCAATAGACAGCAACATTT ]
consensusID : consensus_6295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence
[CAGATCCCCCCGAGGTTCGAACATACTGTGGTTCGAGTATACGTTACGCGGNTACGAAGCGCGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGACGGCGATACTCGTACATCAAATAGCATTAACAAGTAGGCGACGCGTGTGCTATGTGACACTCTACTTTGCAAAGCGCAAATTGCCCCTGTCATACGGACGGAATACCGGGAAGGGCCGGCAAATCACCGATGGTGCAATAGACAGCAACATTTTTGGACTTTTCTGTCCCTGTGTGGATGTGGAGAAGCTAAACAGTCGGAGAGAGAGAGAGAGGTAGAGAGAGTGTTCCGATGGTCAGCATAGGAACAACAATCGAGTCATACAAACATCCACAAGCTGTGGATGTGCTTTAGAGAATAAANAATAAGAACATAGTTTCACCAAACACTGAACACACACACACACACACCGATTTCCCGATACAGGCCATTTACTATTACGAGAACGTTTGAGTTCGCAAAGCTACCACAATGCGTCAACACGAAGGGGAGGGCAAATCGTTGTCCTAATTCCTCACACCCCTTTGGGCATAGGGAATTATTGTCGGATTTTGCGCCATTCGTTTCCGGAAAAGCAATCAGCAGACTTNTTTAATTTTCTTCTTCTTCTTCTTCTATATGCCGGTAACGACTACCCCGGTCATGCCGGTCTATACAAGGCTTCCGAGACTTATTAGTACACCACGCAGCCGGATC]
[+] EMBL AL694433 [CAGATCCCCCCGAGGTTCGAACATACTGTGGTTCGAGTATACGTTACGCGGNTACGAAGCGCGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGACGGCGATACTCGTACATCAAATAGCATTAACAAGTAGGCGACGCGTGTGCTATGTGACACTCTACTTTGCAAAGCGCAAATTGCCCCTGTCATACGGACGGAATACCGGGAAGGGCCGGCAAATCACCGATGGTGCAATAGACAGCAACATTTTTGGACTTTTCTGTCCCTGTGTGGATGTGGAGAAGCTAAACAGTCGGAGAGAGAGAGAGAGGTAGAGAGAGTGTTCCGATGGTCAGCATAGGAACAACAATCGAGTCATACAAACATCCACAAGCTGTGGATGTGCTTTAGAGAATAAANAATAAGAACATAGTTTCACCAAACACTGAACACACACACACACACACCGATTTCCCGATACAGGCCATTTACTATTACGAGAACGTTTGAGTTCGCAAAGCTACCACAATGCGTCAACACGAAGGGGAGGGCAAATCGTTGTCCTAATTCCTCACACCCCTTTGGGCATAGGGAATTATTGTCGGATTTTGCGCCATTCGTTTCCGGAAAAGCAATCAGCAGACTTNTTTAATTTTCTTCTTCTTCTTCTTCTATATGCCGGTAACGACTACCCCGGTCATGCCGGTCTATACAAGGCTTCCGAGACTTATTAGTACACCACGCAGCCGGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6295#0 CCAACAGTTTCTGCACGACTTCTGTTTCTGTACCCAAAATCATATGCCCTTTTTGCATAT 60
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 ATGGTCCAGAAACTAGCGTACACCAAGGGTAGAATTTTTGCTAACAACATACGCAGTGTG 120
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 CAGTGATAACGAGACGCTCACAGTCCAGTGTTTGGGCCTGAAACGGCAACGCAAGAACCA 180
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 TCCACGAGAAACAACACGCACTGATCGGTCAAAGAGTGGCGAACTCCTTACTTACCTTTC 240
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 GCAAACTGCCTTAATCAATCTACCACACACTCCCATCACAGGACGCCCTCCGCAAAGAAA 300
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 GGGCTGAAGCGTGTCACGTTAACAATACCAAAAACCCGTACCGGCGTGCCCGTTCCATTC 360
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 GTCCAATCGCAAAACGGCAGCAAATGTCACAGCATCGTTAGAAGCAACCCTAGTTCTTTC 420
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 GCGTAAAATGTCCTCACCGGATCTGCTGCTGCCGAACGAACCGAGCCTGTCGGTGGACGA 480
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 AAATGTGCCAATAGATTGGCAACCCATCACACTGACACTGGTGGAGTATCCCAAAGGAGA 540
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 TTTCGTCGGCAAATTGCTAGCCTGGATCAGTCTGGCCCCACTCGGCATTGGTGCGGGGTT 600
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 CGTCGCGCTGATACTGTTCCGAAGAGACTTGCACACCATCGTGTTCTTTCTAGGGACGCT 660
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 GGTGAACGAATGTCTTAACATCCTGCTGAAACACTGGATCCAGGAGCCACGGCCAGTGTC 720
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 GCGGGCACAAATTTGGACCGAGTACGGCATGCCTTCATCGCACTCACAGTTTATGTGCTT 780
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 TTTTTTCCACCTACGTACTCCTGTTTATCTTCATAAGACTGCATCATATAAATAATAGTA 840
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 ATAGTGCCCGGTTCGAGCGACTAGTACGATTGCTGGTGCTTGCCATCTGTTGGACGGCCG 900
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 CATTTCTCGTCTGCTTCGGCAGGATCTACCTGCTCTATCACACACTTTCCCAAGTGCTGA 960
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 TCGGTGCCCTCGTCGGTACGGTAATGGGTGCGCTGTGGTTCCTGCTGACGCACTTCGTCC 1020
consensus_6295#1 ------------------------------------------------------------
consensus_6295#0 TCACGCCCTACTTTCCGATGGTCGTGCTGTGGCGCGTGTCGGAACTGTTCCTGCTGCGGG 1080
consensus_6295#1 --------------------------------------------------------CAGA 4
* *
consensus_6295#0 ACACCACGCTCATACCGAACATACTGTGGTTCGAGTATACCGTTACGCGGC-ACGAAGCG 1139
consensus_6295#1 TCCCCCCGA--GGTTCGAACATACTGTGGTTCGAGTATAC-GTTACGCGGNTACGAAGCG 61
* ** ** ************************* ********* ********
consensus_6295#0 CGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGA 1199
consensus_6295#1 CGCGCCCGGTCGCGCAAGCTGGTGAGCATGAAATCTCAGTGACGTTTTTGGTCACCCTGA 121
************************************************************
consensus_6295#0 CGGCGATACTCGTACATCAAATAGCATTAACAAGTAGGCGACGCGTGTGCTATG-GACAC 1258
consensus_6295#1 CGGCGATACTCGTACATCAAATAGCATTAACAAGTAGGCGACGCGTGTGCTATGTGACAC 181
****************************************************** *****
consensus_6295#0 TCTACTTTGCAAAGCGCAGATTGCCCCTGTCATACGGACGGAATACCGGGAAGGGCCGGC 1318
consensus_6295#1 TCTACTTTGCAAAGCGCAAATTGCCCCTGTCATACGGACGGAATACCGGGAAGGGCCGGC 241
****************** *****************************************
consensus_6295#0 AAATCACCGATGGTGCAATAGACAGCAACATTTTTGGACTTTTCTGTCCCTGTGTGGATG 1378
consensus_6295#1 AAATCACCGATGGTGCAATAGACAGCAACATTTTTGGACTTTTCTGTCCCTGTGTGGATG 301
************************************************************
consensus_6295#0 TGGAGAAGCTAAACAGTCGGAGAGAGAGAGAGAGGTAGAGAGAGTGTTCCGATGGTCAGC 1438
consensus_6295#1 TGGAGAAGCTAAACAGTCGGAGAGAGAGAGAGAGGTAGAGAGAGTGTTCCGATGGTCAGC 361
************************************************************
consensus_6295#0 ATAGGAACAACAATCGAGTCATACAAACATCCACAAGCTGTGGATGTGCTTTAGAGAATA 1498
consensus_6295#1 ATAGGAACAACAATCGAGTCATACAAACATCCACAAGCTGTGGATGTGCTTTAGAGAATA 421
************************************************************
consensus_6295#0 AAAA-TAAGAACATAT-------------------------------------------- 1513
consensus_6295#1 AANAATAAGAACATAGTTTCACCAAACACTGAACACACACACACACACACCGATTTCCCG 481
** * **********
consensus_6295#0 ------------------------------------------------------------
consensus_6295#1 ATACAGGCCATTTACTATTACGAGAACGTTTGAGTTCGCAAAGCTACCACAATGCGTCAA 541
consensus_6295#0 ------------------------------------------------------------
consensus_6295#1 CACGAAGGGGAGGGCAAATCGTTGTCCTAATTCCTCACACCCCTTTGGGCATAGGGAATT 601
consensus_6295#0 ------------------------------------------------------------
consensus_6295#1 ATTGTCGGATTTTGCGCCATTCGTTTCCGGAAAAGCAATCAGCAGACTTNTTTAATTTTC 661
consensus_6295#0 ------------------------------------------------------------
consensus_6295#1 TTCTTCTTCTTCTTCTATATGCCGGTAACGACTACCCCGGTCATGCCGGTCTATACAAGG 721
consensus_6295#0 ------------------------------------
consensus_6295#1 CTTCCGAGACTTATTAGTACACCACGCAGCCGGATC 757
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||