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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1151 fasta sequence
[CCGCTGCAGGATCCGTACTGTGCGTGGGACGATCTGAATCGGGACTGCAAACCGATCGACGAGGTGCACGCGTCCGGGGCGCCGATCGATCAGTTCTACCAGCGGTTGGATGGGGAGCGCATCGGGGAGATTTGCAGGAAGTACGACCATCAGGAACCGCCGGTACACACGTACGAGGATAACGATGTGTACACGCGGGTCGATGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTCGACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCGGAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGGATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTATCGGCAACACCGAACCTGATATCGCTACTGTTAGGATTTATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAACACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATCGACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAGGACATCAGCAAAGGGATGGGCACGCTGCAGAAGGTGAAAAAGACGTACATATGATTTACTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTGGCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCTGGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCTCGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAACCTCGAGCGACGCTTCTTTTCTACTTCTTTTGGNGGGTGGTATATTAAGCTCTGTGTATGTATGNGGGGATCA]
[+] EMBL BM576316 [CCGCTGCAGGATCCGTACTGTGCGTGGGACGATCTGAATCGGGACTGCAAACCGATCGACGAGGTGCACGCGTCCGGGGCGCCGATCGATCAGTTCTACCAGCGGTTGGATGGGGAGCGCATCGGGGAGATTTGCAGGAAGTACGACCATCAGGAACCGACGGTGCACACGTACGAGGATAACGATGTGTACACGCGGGTCGACGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTCGACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCGGAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGGATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTATCGGCAACACCGAACCTGATATCGCTACTGTTAGGATTTATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAACACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGC ]
[+] EMBL BM590573 [ CCGGTACACACGTACGAGGATAACGATGTGTACACGCGGGTCGATGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTCGACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCGGAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGGATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTATCGGCAACACCGAACCTGATATCGCTACTGTTAGGTTTCATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAGCACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATCGACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAGGACATCAGCAAAGGGATGGGCACGCTGCAGAAGGTGAAAAAGACGTACATATGATTTACTGCTGTGC ]
[+] EMBL BM617023 [ CCGGTACACACGTACGAGGATAACGATGTGTACACGCGGGTCGATGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTCGACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCGGAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGGATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTATCGGCAACACCGAACCTGATATCGCTACTGTTAGGTTTCATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAGCACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATCGACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAGGACATCAGCAAAGGGATGGGCACGCTGCAGAAGGTGAAAAAGACGTACATATGATTTACT ]
[+] EMBL BX625222 [ GGATTTATCGTGACCGTGATGGTGAGCGTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGCGAACACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACGCGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAGCAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATCGACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAGGACATCAGCAAAGGGATGGGCACGCTGCAGAAGGTGAAAAAGACGTACATATGATTTACTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTGGCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCTGGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCTCGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAACCTCGAGCGACGCTTCTTTTCTACTTCTTTTGGNGGGTGGTATATTAAGCTCTGTGTATGTATGNGGGGATCA]
consensusID : consensus_6304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[CAGAATCCCCGAGGTTAACGTACATATGATTTACTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTGGCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCTGGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCTCGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAACTCGAGCGACGCTTCTTTTCTACTTCTTTTGGTGGTTTGGTATATTAAGCTCTGTGTATGTATGTGGGGATCATTTTAACCCAGCGCTCTCTCGGAGAAGATCCGCCACGGAAAAGGATAAGAGTAAGGTGAATCCATTCTAAGTACACCATGGAAAATCGAAGCACAATCGAGGCTCTGAGCCAAATTTGTTAGGGGAAAAAGCATTTCAGGCACAAAAGCAAAAACCCTCCCGGTCTCCAAGCCATCCAGACACAGATGCCGGTCAGGTTCTCAGTAAAGGTTCCGGTTCGATTCACTCATCCCGGTGTAGCGATNTGTATGGTGAACGGAATGGAATGTTTCAAGGTACTACTCTCTCGCTCTTTGAAATGGCTATTT]
[+] EMBL AL694455 [CAGAATCCCCGAGGTTAACGTACATATGATTTACTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTGGCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCTGGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCTCGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAACTCGAGCGACGCTTCTTTTCTACTTCTTTTGGTGGTTTGGTATATTAAGCTCTGTGTATGTATGTGGGGATCATTTTAACCCAGCGCTCTCTCGGAGAAGATCCGCCACGGAAAAGGATAAGAGTAAGGTGAATCCATTCTAAGTACACCATGGAAAATCGAAGCACAATCGAGGCTCTGAGCCAAATTTGTTAGGGGAAAAAGCATTTCAGGCACAAAAGCAAAAACCCTCCCGGTCTCCAAGCCATCCAGACACAGATGCCGGTCAGGTTCTCAGTAAAGGTTCCGGTTCGATTCACTCATCCCGGTGTAGCGATNTGTATGGTGAACGGAATGGAATGTTTCAAGGTACTACTCTCTCGCTCTTTGAAATGGCTATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6304#0 CCGCTGCAGGATCCGTACTGTGCGTGGGACGATCTGAATCGGGACTGCAAACCGATCGAC 60
consensus_6304#1 ------------------------------------------------------------
consensus_6304#0 GAGGTGCACGCGTCCGGGGCGCCGATCGATCAGTTCTACCAGCGGTTGGATGGGGAGCGC 120
consensus_6304#1 ------------------------------------------------------------
consensus_6304#0 ATCGGGGAGATTTGCAGGAAGTACGACCATCAGGAACCGCCGGTACACACGTACGAGGAT 180
consensus_6304#1 ------------------------------------------------------------
consensus_6304#0 AACGATGTGTACACGCGGGTCGATGGGTCCGGGGCGGTGGAAAAGCCGGACAAATCGTTC 240
consensus_6304#1 ------------------------------------------------------------
consensus_6304#0 GACCAGCGCAATGTGCTGATCGTGCACGCGAACCATGGTACGGTGTCGTCGGTGGGGCCG 300
consensus_6304#1 ------------------------------------------------------------
consensus_6304#0 GAAGATATCGACAACGAGATATCGATGTCGTCGGTGGAAGGTGACGAGCAAACGAACCGG 360
consensus_6304#1 ------------------------------------------------------------
consensus_6304#0 ATCATCAATACGCTGCAGTACCAGCCGAAGCCGGATACATTCGTGAAGCAAAATGTGCTA 420
consensus_6304#1 ------------------------------------------------------------
consensus_6304#0 TCGGCAACACCGAACCTGATATCGCTACTGTTAGGATTTATCGTGACCGTGATGGTGAGC 480
consensus_6304#1 ------------------------------------------------------------
consensus_6304#0 GTTGGAGTGGGCTGTCTCTTCATGCGCCACCTAATGCTGAAGAAAGGGCAGGGAGGATGC 540
consensus_6304#1 ------------------------------------------------------------
consensus_6304#0 GAACACCGCAATCAGCTGCACTGGCAAAGCGGCAAAAGCCTCTCGATGCTGTCCCAGACG 600
consensus_6304#1 ------------------------------------------------------------
consensus_6304#0 CGCACGAGCGGCAAGGACGTGAACCTGCTGATGAACACGACCAACCAGTACCACACGCAG 660
consensus_6304#1 ------------------------------------------------------------
consensus_6304#0 CAGCAAGCGATCGTGCAGCAGCTGCAGCAGCACCATCAGAACAACTGCAAGGATAATATC 720
consensus_6304#1 ------------------------------------------------------------
consensus_6304#0 GACTTTGACTACAAGGACCGCAGCGTGGAGTGCAAAAACTCGACGGAAAATCTCGAGAAG 780
consensus_6304#1 ------------------------------------------------------------
consensus_6304#0 GACATCAGCAAAGGGATGGGCACGCTGCAGAAGGT--GAAAAAGACGTACATATGATTTA 838
consensus_6304#1 ---------------------------CAGAATCCCCGAGGTTAACGTACATATGATTTA 33
***** ** ****************
consensus_6304#0 CTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTG 898
consensus_6304#1 CTGCTGTGCTACTAAACAACCAAACACCGTCTTACACCCGTCCGGATGACGTTGTTGGTG 93
************************************************************
consensus_6304#0 GCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCT 958
consensus_6304#1 GCGGCGGTGGGTGACCCATTTTTTTATTAGAAGACCCCATTTCCTTCTTACATACGCTCT 153
************************************************************
consensus_6304#0 GGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCT 1018
consensus_6304#1 GGCGATGGGCGACGGTGTGTCTGACTCTTCTGCTCACAACCCTCCATCTTTTCCATATCT 213
************************************************************
consensus_6304#0 CGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAA 1078
consensus_6304#1 CGAGGAAGGTCTTCTTTCTCCCCCCGTGCACTACGAAGATGGGGGTAAAGACACACAAAA 273
************************************************************
consensus_6304#0 CCTCGAGCGACGCTTCTTTTCTACTTCTTTTGGNGGGT-GGTATATTAAGCTCTGTGTAT 1137
consensus_6304#1 C-TCGAGCGACGCTTCTTTTCTACTTCTTTTGGTGGTTTGGTATATTAAGCTCTGTGTAT 332
* ******************************* ** * *********************
consensus_6304#0 GTATGNGGGGATCA---------------------------------------------- 1151
consensus_6304#1 GTATGTGGGGATCATTTTAACCCAGCGCTCTCTCGGAGAAGATCCGCCACGGAAAAGGAT 392
***** ********
consensus_6304#0 ------------------------------------------------------------
consensus_6304#1 AAGAGTAAGGTGAATCCATTCTAAGTACACCATGGAAAATCGAAGCACAATCGAGGCTCT 452
consensus_6304#0 ------------------------------------------------------------
consensus_6304#1 GAGCCAAATTTGTTAGGGGAAAAAGCATTTCAGGCACAAAAGCAAAAACCCTCCCGGTCT 512
consensus_6304#0 ------------------------------------------------------------
consensus_6304#1 CCAAGCCATCCAGACACAGATGCCGGTCAGGTTCTCAGTAAAGGTTCCGGTTCGATTCAC 572
consensus_6304#0 ------------------------------------------------------------
consensus_6304#1 TCATCCCGGTGTAGCGATNTGTATGGTGAACGGAATGGAATGTTTCAAGGTACTACTCTC 632
consensus_6304#0 ----------------------
consensus_6304#1 TCGCTCTTTGAAATGGCTATTT 654
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||