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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6313#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1523 fasta sequence
[TGGCACTTGGCGGTCCGGCTTCGCTCGACGCCGACAGCGAGCTTAGCTCGTACGTGTGGATCTGCACCAGCACCCATTCGGCCAGCACGGTAACGGTGATCGATGCGAAAAATCCATCCGAAGTGTTGGATTCTTCCCCCGGGTGTGCCAGAATCATTTGCTGTGCATCTGCACCGTTCGCGGAGCGCTCGAGATGGATTACGCAATGCTGGAAAACAGCGAAGTTACCAAATCGGGTAAAATGCTTGAAAAGCCAGGCGAATCTCCTGACGATATAGGAAAAGTATCGTACGAAAAGGTTGTACGCAGCGCTGCCGAGTCCGCGCCAACTTCGGCAGACGAGCATAAAGCTACGGAAGAAGCACAGGAAGCGGTGCCACCATCCGATACAGTCCCAGAACAAGCTACCGAAGCTAACAGCGATCGTGATCTTAATCACAACAGTAAGGCCGCCCATGAAGTCCTAGACAGCGTAGACACGAAAGACATTGCGATTGCGGTCGATGGGAACGATAATACGATCGGCGAGACCACCTCCTCACCCAGCAAACCGCAGCCCGAGACAGCAATCGAAGAGTCGATCTCCTCGATCGGTCCGACCATGTGGCTGGGCGCTCAGAACGGAATGCTGTACGTGCACAGTTCCGTGGCAAGATGGAACGTGTGTCTGCACAAAATCAAGCTGCCCGACTCNGTGCTATCGATAGTGCACGTCGAGTCGCGTGTCATCGTTGCGCTGGCGAACGGAACGTTGGCAGTGTTTCGGCGGCAGGTTAGCGGCGAGTGGGATCTTAACAGCTACCATCTTTTGACGCTTGGCTCGCCGAAGTACTCTGTGCGTTGTCTTACGATCGTCGGTGACAAGGTTTGGGCGGCTCACCGCAACAAGATACACGTGATCGATCCCATCACGCTGTGCATTCTGAAATCGTTCGAAGCTCATCCACGGAAGGAAAGCCAAATTCGCCAGATGGCTACTACGGGGCTGGGTGTGTGGGTATCTATAAGATTGGATTCGACTCTAAGGCTCTTCTCCGCGGAAACGTACGATCATCTGGAAGACATCGATATCGATCCTTACGTGTCGAAGATGTTGGGCACCGGAAAGCTCGGCTTTTCGTTTGTGCGCATTACCGCTCTGCTGGTATCGTGCAATAGGCTGTGGATAGGAACCGGCAACGGTGTGGTGATTTCAGTTCCACTGACTGACGCTAGCGGTGCTTCCAATACACCATACTCTCCGCGCTTCGCAAATGCTCAACTTTCGTTCCACGGGCACCGCGATGCAGTGAAGTTCTTTGTGTCCGTGCCGATGAACCCGCCCAATCAGGGGCTACCAACCACTTCGAAGGATATGCTGGTAATATCCGGCGGAGAGGGATACATCGATTTTCGGTTAGGTGACGGTGATATGGAGGCGAGTGTCGAGCTAGAACCGAACCAAACCATAGAGAATCGCAATGAGAAGAGCTACATTATCGTGTGGAAAGTCAGCAATCGTTAAGATACGGTGTATTGGACTG]
[+] EMBL BX623793 [TGGCACTTGGCGGTCCGGCTTCGCTCGACGCCGACAGCGAGCTTAGCTCGTACGTGTGGATCTGCACCAGCACCCATTCGGCCAGCACGGTAACGGTGATCGATGCGAAAAATCCATCCGAAGTGTTGGATTCTTCCCCCGGGTGTGCCAGAATCATTTGCTGTGCATCTGCACCGTTCGCGGAGCGCTCGAGATGGATTACGCAATGCTGGAAAACAGCGAAGTTACCAAATCGGGTAAAATGCTTGAAAAGCCAGGCGAATCTCCTGACGATATAGGAAAAGTATCGTACGAAAAGGTTGTACGCAGCGCTGCCGAGTCCGCGCCAACTTCGGCAGACGAGCATAAAGCTACGGAAGAAGCACAGGAAGCGGTGCCACCATCCGATACAGTCCCAGAACAAGCTACCGAAGCTAACAGCGATCGTGATCTTAATCACAACAGTAAGGCCGCCCATGAAGTCCTAGACAGCGTAGACACGAAAGACATTGCGATTGCGGTCGATGGGAACGATAATACGATCGGCGAGACCACCTCCTCACCCAGCAAACCGCAGCCCGAGACAGCAATCGAAGAGTCGATCTCCTCGATCGGTCCGACCATGTGGCTGGGCGCTCAGAACGGAATGCTGTACGTGCACAGTTCCGTGGCAAGATGGAACGTGTGTCTGCACAAAATCAAGCTGCCCGACTCNGTGCTATCGATAGTGCACGTCGAGTCGCGTGTCATCGTTGCGC ]
[+] EMBL BM642852 [ ccGAAAACAGCGAAGTTACCAAATCGGGTAAAATGCTTGAAAAGCCAGGCGAATCTCCTGACGATATAGGAAAAGTATCGTACGAAAAGGTTGTACGCAGCGCTGCCGATTCCGCGCCAACTTCGGCAGACGAGCATAAAGCTACGGAAGAAGCACAGGAAGCGGTGCCACCATCCGATACAGTCCCAGAACAAGCTACCGAAGCTAACAGCGATCGTGATCTTAATCACAACAGTAAGGCGGCCCATGAAGTCCTAGACAGCGTAGACACGAAAGACATTGCGATTGCGGTCGATGGGAACGATAATACGATCGGCGAGACCACCTCCTCACCCAACAAACCGCAGCCCGAGACAGCGATCGAAGAGTCGATCTCGTCGATCGGTCCAACCATGTGGCTGGGCGCTCAGAACGGCATGCTGTACGTGCACAGTTCCGTGGCAAGATGGAACGTGTGTCTGCATAAAATCAAGCTGCCCGACTCGGTGCTATCGATAGTGCACGTCGAGTCGCGTGTCATCGTTGCGCTGGCGAACGGAACGTTGGCAGTGTTTCGGCGGCAGGTTAGCGGCGAGTGGGATCTTAACAGCTACCATCTTTTGACGCTTGG ]
[+] EMBL BX624609 [ CATCGTTGCGCTGGCGAACGGAACGTTGGCAGTGTTTCGGCGGCAAGTTAGCGGCGAGTGGGATCTTAACAGCTACCATCTACTGACGCTTGGCTCGCCGAAGTACTCTGTGCGTTGTCTTACGATCGTCGGTGACAAGGTTTGGGCGGCTCACCGCAACAAGATACACGTGATCGATCCCATCACGCTGTGCATTCTGAAATCGTTCGAAGCTCATCCACGGAAGGAAAGCCAAATTCGCCAGATGGCTACTACGGGGCTGGGTGTGTGGGTATCTATAAGATTGGATTCGACTCTAAGGCTCTTCTCCGCGGAAACGTACGATCATCTGGAAGACATCGATATCGATCCTTACGTGTCGAAGATGTTGGGCACCGGAAAGCTCGGCTTTTCGTTTGTGCGCATTACCGCTCTGCTGGTA ]
[+] EMBL BM604060 [ ccgACGGGATCGATCCCATCACGCTGTGCATTCTGAAATCGTTCGAAGCTCATCCACGCAAGGAAAGCCAAATTCGCCAGATGGCTACTACGGGGCTGGGTGTGTGGGTATCTATAAGATTGGATTCGACTTTAAGGCTCTTCTCCGCGGAAACGTACGATCATCTGGAAGACATCGACATCGATCCTTACGTGTCGAAGATGTTGGGCACCGGAAAGCTCGGCTTTTCGTTTGTGCGCATTACCGCTCTGCTGGTATCGTGCAATAGGCTGTGGATAGGAACCGGCAACGGTGTGGTGATTTCAGTTCCACTGACTGACGCTAGCGGTGCTTCCAATACACCATACTCTCCGCGCTTCGCAAATGCTCAACTTTCGTTCCACGGGCACCGCGATGCAGTGAAGTTCTTTGTGTCCGTGCCGATGAACCCGCCCAATCAGGGGCTACCAACCACTTCGAAGGATATGCTGGTAATATCCGGCGGAGAGGGATACATCGATTTTCGGTTAGGTGACGGTGATATGGAGGCGAGTGTCGAGCTAGAACCGAACCAAACCATAGAGAATCGCAATGAGAAGAGCTACATTATCGTGTGGAAAGTCAGCAATCGTTAAGATACGGTGTATTGGACTG]
consensusID : consensus_6313#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1046 fasta sequence
[TNCCCCCGCAGGTTAATCGAGTCGCGTGTCATCGTTGCGCTGGTGAACGGAACGTTGGCAGTGTTTCGGCGGCAAGTTAGCGGCGAGTGGGATCTTAACAGCTACCATCTACTGACGCTTGGCTCGCCGAAGTACTACTGTGCGTTGTCTTACGATCGTACGGTGACAAGGTTTTGGGCGGTCACCGAACAAGATACACGTGATCGATCCCATCACGCTGTGCCATTCTGAAATCGTTCCGAAAGCGTCATACCACGGAAGGAAAGCCCAAATTCGGCAGAATGGCGTACATACAGGGGCCTGGGTTGTGTTGGGGTATCTNATTACAGAATATGGATTCCGCACCTTACTCAAGAGNGTCTATACATACCGCGGCAAAAACGTAACCGATNCATACTTGGGAANAACATACGNATATACAGAACCCTATACGTNGTTCCGNAACGAATCGTTANGGGAAACNCGGCAACAGGCTCGCGCTTAACACGCAAAGATNGGCGGCACTATTAAAACCGGCGATCCACTGNCATGGATAAATCAGAGATGCCACAACATAACAGNCAAGGNNAGGCGACCCTTAANGGANAAACCCCCGCNCCAACACACGGACATGGANGAAGANNGAAAAACACACNACACGACAATCCCCACCCCCTGNACANCCCATGNACCANCCNCAANNCCGCGCCTGCCGACTCCAAAACAAACACACCANAACNACCAACCCAGGCCGAGCCCNGNACGGCCCCNAACACNGGANAGCGCCACACGCNACACACACCCGGACACCTCCCCACACCNCCGCGCGCCACCACCCCGCCGACACGTAGCCCACAGAGTGCAAAAGGANACACCACACAGGATGGATACCACGAAGCCGACCGGANCNGGAAAACCCGCCGGCCACCCCACACNACCANACGCGGGGCGCAGCNACCACCAANAACNCCACCCACACAGCACAACAGGNACANCAAANGAGCCNTAGGAGGCGACAACCACTCCCAGAGCGNNGAGAGNNGCAAACGANGACAGAACACCANCAC]
[+] EMBL AL694500 [TNCCCCCGCAGGTTAATCGAGTCGCGTGTCATCGTTGCGCTGGTGAACGGAACGTTGGCAGTGTTTCGGCGGCAAGTTAGCGGCGAGTGGGATCTTAACAGCTACCATCTACTGACGCTTGGCTCGCCGAAGTACTACTGTGCGTTGTCTTACGATCGTACGGTGACAAGGTTTTGGGCGGTCACCGAACAAGATACACGTGATCGATCCCATCACGCTGTGCCATTCTGAAATCGTTCCGAAAGCGTCATACCACGGAAGGAAAGCCCAAATTCGGCAGAATGGCGTACATACAGGGGCCTGGGTTGTGTTGGGGTATCTNATTACAGAATATGGATTCCGCACCTTACTCAAGAGNGTCTATACATACCGCGGCAAAAACGTAACCGATNCATACTTGGGAANAACATACGNATATACAGAACCCTATACGTNGTTCCGNAACGAATCGTTANGGGAAACNCGGCAACAGGCTCGCGCTTAACACGCAAAGATNGGCGGCACTATTAAAACCGGCGATCCACTGNCATGGATAAATCAGAGATGCCACAACATAACAGNCAAGGNNAGGCGACCCTTAANGGANAAACCCCCGCNCCAACACACGGACATGGANGAAGANNGAAAAACACACNACACGACAATCCCCACCCCCTGNACANCCCATGNACCANCCNCAANNCCGCGCCTGCCGACTCCAAAACAAACACACCANAACNACCAACCCAGGCCGAGCCCNGNACGGCCCCNAACACNGGANAGCGCCACACGCNACACACACCCGGACACCTCCCCACACCNCCGCGCGCCACCACCCCGCCGACACGTAGCCCACAGAGTGCAAAAGGANACACCACACAGGATGGATACCACGAAGCCGACCGGANCNGGAAAACCCGCCGGCCACCCCACACNACCANACGCGGGGCGCAGCNACCACCAANAACNCCACCCACACAGCACAACAGGNACANCAAANGAGCCNTAGGAGGCGACAACCACTCCCAGAGCGNNGAGAGNNGCAAACGANGACAGAACACCANCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6313#0 TGGCACTTGGCGGTCCGGCTTCGCTCGACGCCGACAGCGAGCTTAGCTCGTACGTGTGGA 60
consensus_6313#1 -------TNCCCCCGCAGGTTAA-TCGA-GTCGCGTGTCATCGTTGCGCTGGTGAACGGA 51
* * * * ** **** * ** * * * * ** * * ***
consensus_6313#0 TCTGCACCAGCACCCATTCGGCCAGCACGGTAACGGTGATCGATGCGAAAAATCCATCCG 120
consensus_6313#1 ---ACGTTGGCAGTGTTTCGGC-GGCAAGTTAGCGGCGAGTGGGATCTTAACAGCTACCA 107
* *** ****** *** * ** *** ** * ** * **
consensus_6313#0 AAGTGTTGGATTCTTCCCCCGGGTGTGCCAGAATCATTTGCTGTGCATCTGCACCGTTCG 180
consensus_6313#1 TCTACTGACGCTTGGCTCGCCGAAGTACTACTGTGCGTTGTCTTACGATCGTACGGTG-A 166
* * * * * * ** * * * *** * * * ** **
consensus_6313#0 CGGAGCGCTCGAGATGGATTACGCAATGCTGGAAAACAGCGAAGTTACCAAATCGGGTAA 240
consensus_6313#1 CAAGGTTTTGGGCGGTCACCGAACAA-GATACACGTGATCGATCCCATCACGCTG--TGC 223
* * * * * *** * * * * *** * ** * *
consensus_6313#0 AATGCTTGAAAAGCCAGGCGAATCTCCTGACGATATAGGAAAAGTATCGTACG--AAAAG 298
consensus_6313#1 CATTCTGAAATCGTTCCGAAAGCGTCATACCACGGAAGGAAAGCCCAAATTCGGCAGAAT 283
** ** ** * * * ** * * ****** * ** * **
consensus_6313#0 GTTGTACGCAGCGCTGCCGAGTCCGCGCCAACTTCGGCAGACGAGCATAAAGCTACGGAA 358
consensus_6313#1 GGCGTACATACAGGGGCCTGGGTTGTGTTGG----GGTATCTNATTACAGAA-TATGGAT 338
* **** * * *** * * * ** * * * * * ** ***
consensus_6313#0 GAAGCACAGGAAGCGGTGCCACCATCCGATACAGTCCCAGAACAAGCTACCGAAGCTAAC 418
consensus_6313#1 TCCGCACCTTACTCAAGAGNGTCTATACATACCGCGGCAAAA-ACGTAACCGATNCATAC 397
**** * * * **** * ** ** * * ***** * **
consensus_6313#0 AGCGATCGTGATCTTAATCACAACAGTAAGGCCGCCCATGAAGTCCTAGACAGCGTAGAC 478
consensus_6313#1 T----TGGGAANAACATACGNATATACAGAACCCTATACGTNGTTCCGNAACGAATCGTT 453
* * * * * * * ** * * ** * * * * *
consensus_6313#0 ACGAAAGACATTGCGATTGCGGTCGATGGGAACGATAATACGATCGGCGAGACCACCTCC 538
consensus_6313#1 ANGGGAAACNCGGCAACAG-GCTCGCGCTTAAC-ACGCAAAGATNGGCGGCACTATTAA- 510
* * * ** ** * * * *** *** * * *** **** ** *
consensus_6313#0 TCACCCAGCAAACCGCAGCCCGAGACAGCAATCGAAGAGTCGATCTCCTCGATCGGTCCG 598
consensus_6313#1 --AACCGGCGATCCACTGNCATGGATA--AATCAGAGATGCCACAACAT-AACAGNCAAG 565
* ** ** * ** * * * ** * **** *** * * * * * * *
consensus_6313#0 ACCATGTGGCTGGGCGCTCAGAACGGAATGCTGTACGTGCACAGTTCCGTGGCAAGATGG 658
consensus_6313#1 GNNAGGCGACC---CTTAANGGANAAACCCCCGCNCCAACACACGGACATGG--ANGAAG 620
* * * * * * * * * * * **** * *** * *
consensus_6313#0 AACGTGTGTCTGCACAAAATCAAGCTGCCCGACTCN-GTGCTATCGATAGTGCACGTCGA 717
consensus_6313#1 ANNGAAAAAC-ACACNACACGACAATCCCCACCCCCTGNACANCCCATGNACCANCCNCA 679
* * * *** * * * * *** * * * * * ** ** *
consensus_6313#0 GTCGCGTGTCATCGTTGCGCTGGCGAACGGAACGTTGGCAGTGTTTCGGCGGCAGGTTAG 777
consensus_6313#1 ANNCCGCGCC----TGCCGACTCCAAAACAAACAC-ACCANAACNACCAACCCAGGCCGA 734
** * * * ** * ** *** ** * ****
consensus_6313#0 CGGCGAGTGGGATCTTAACAGCTACCATCTTTTGACGCTTGGCTCGCCGAAGTAC-TCTG 836
consensus_6313#1 GCCCNGNACGGCCCCNAACACNGGANAGCGCCACACGCNACACACACCCGGACACCTCCC 794
* ** * **** * * **** * * ** ** **
consensus_6313#0 TGCGTTGTCTTACGAT-CGTCGGTGACAAGGTTTGGGCGGCTCACCGCAACAAGATACAC 895
consensus_6313#1 CACACCNCCGCGCGCCACCACCCCGCCGACACGTAGCCCACAGAGTGCAAAAGGANACAC 854
* * ** * * * * * * * * * * **** * ** ****
consensus_6313#0 GTGATCGATCCCATCACGCTGTGCATTCTGAAATCGTTCGAAGCTCATCCACGGAAGGAA 955
consensus_6313#1 ---------CACA-CAGGATGGATACCACGAAGCCGACCGGANCN-------GGAAAACC 897
* ** ** * ** * *** ** ** * * ****
consensus_6313#0 AGCCAAATTCGCCAGATGGCTACTACGGGGCTGGGTGTGTGGGTATCTATAAGATTGGAT 1015
consensus_6313#1 CGCCGGCCACCCCA------CACNACCANACGCGGGGCGCAGCNACCACCAANA----AC 947
*** * *** ** ** * ** * * * * * ** * *
consensus_6313#0 TCGACTCTAAGGCTCTTCTCCGCGGAAACGTACGATCATCTGGAAGACATCGATATCGAT 1075
consensus_6313#1 NCCACCC----ACACAGCACAACAGGNACANCAAANGAGCCNTAGGAGGCGACAACCACT 1003
* ** * * * * * * * ** * * * * ** * * *
consensus_6313#0 CCTTACGTGTCGAAGATGTTGGGCACCGGAAAGCTCGGCTTTTCGTTTGTGCGCATTACC 1135
consensus_6313#1 CCCAGAGCGNNGAGAGNNGCAAACGANG-ACAGAACACCANCAC---------------- 1046
** * * ** * * * ** * * *
consensus_6313#0 GCTCTGCTGGTATCGTGCAATAGGCTGTGGATAGGAACCGGCAACGGTGTGGTGATTTCA 1195
consensus_6313#1 ------------------------------------------------------------
consensus_6313#0 GTTCCACTGACTGACGCTAGCGGTGCTTCCAATACACCATACTCTCCGCGCTTCGCAAAT 1255
consensus_6313#1 ------------------------------------------------------------
consensus_6313#0 GCTCAACTTTCGTTCCACGGGCACCGCGATGCAGTGAAGTTCTTTGTGTCCGTGCCGATG 1315
consensus_6313#1 ------------------------------------------------------------
consensus_6313#0 AACCCGCCCAATCAGGGGCTACCAACCACTTCGAAGGATATGCTGGTAATATCCGGCGGA 1375
consensus_6313#1 ------------------------------------------------------------
consensus_6313#0 GAGGGATACATCGATTTTCGGTTAGGTGACGGTGATATGGAGGCGAGTGTCGAGCTAGAA 1435
consensus_6313#1 ------------------------------------------------------------
consensus_6313#0 CCGAACCAAACCATAGAGAATCGCAATGAGAAGAGCTACATTATCGTGTGGAAAGTCAGC 1495
consensus_6313#1 ------------------------------------------------------------
consensus_6313#0 AATCGTTAAGATACGGTGTATTGGACTG 1523
consensus_6313#1 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||