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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6323#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1953 fasta sequence
[CCGTGTTGGATTGAGTGGTATCACAACTACATCTTCGAGCAAAAAAGCGAGCAAAGCAACCGTTGCCGGAAGACAACACTACCGCACCGACTATCGAGGAGGCTGTGGTGCTAAACGGGATAAGGCAGCCTGTCCAGTCATTTCACCCGTCGTCCGTCAGCTGTTGGTTCGGCGATCCTGATCCATCCCGGAGCCAATAAAAAAGGCTTTTTGCATAAAATCTTAACAGCACAAACCACGATCGCGGATCGTCTTCCTTAAGCACAACAACAACAGCAAGATGAGCGAACAAAGCATCATTGGGGCCCGGGCCTCGGTCATGGTGTACGACGATGTGCAGCGGAAGTGGATACCGTCCGGCAGCTCGTCCGGTCTGAGCAAGGTGCAAATCTTCCACCATCAGCAAAACAACACGTTCCGCGTCGTCGGTCGGAAGCTGCAGGACCATG-AGGTCGTCATCAACTGTTCGATCATCAAGGGGCTGAAGTATAATCAGGCCACCGCGACGTTTCACCAGTGGCGCGATTCCAAGTTCGTGTACGGGTTGAACTTCTCCAGCCCGATGGACGCGGAAGCGTTTGCCCGTGCGATGATGCACGCTTTGGATGTGCTGAGTGGACGCGTACCACCCTCG-TCGACCATGCAAACGACCAATCCGAACCCGAGCCAGATGGCTGCGGCGTACGAGGAGGACATGGGCTACCGTACGATGACCCGTGAAGATGCGGCCATCATGCAGCAGCAGCAGCAAATGACTAGTCAACCGCCGGGCGTGGGACCACCACAGCAACCGCCGAACTCGATACCGGGCCCGGGCGGTGGCATACTATCCCCGCAAACGCCGACATCTCAAACGCTGCCATCACAAGCCACCCAGCAGCAGCAGCAGCAGCAGCAACAACAGACGCATCATCGTACAAACAGTGCACCACCGGTTCCGCCAGCGTTACCGACACAACAGCAGCAGCAGGCATCGCAGCAGTCACAGGCGCACAACAGCAGCAACAGAAACCGATCTATGCATCACAGCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGCAGCCGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAATCATCAAATGCTGAATCAGTCGGTGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACCTTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATCCAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGCAGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATGGTGTCGGCGGTCCGTACGGTGCTGGCCAACCACAGTACGGTATACCACCGGTTCCACAGATGCCAATGCAGAAGCCGCACCAGCAGCAACCACCGTCACAGATGCAGCAAACGAATGCTCCTCCACCACCGCCAATGATGCCGCCGATGTTCCCGATGGCGGCACCATCTAGCGTACCGCAGCCACCAGCACCGCCGATGCCACCAAATCTGAATAATGCGGCTGCTCCACCGCCGCCGCCACCACCGCCGGGCATGCCAGCGGTAAAGCCGGGAGAAATCAACTCCTTGGCCCTCCAGCTGGCCAGTGCCAAACTGAAACGCAGCCAACCGCCGAAAAGCTCGCCGGCCGCTGGCGTGTCGTCCACCTCTTCCTCCGCCAACAATGGCAGCAATGCCGTGTCGTCCACCGTGACGGAAAACAGTGGCAGCAGTACATCGAGCGGAGGTAGACGGTCGTCATCTGGTATGGCATCGATGATGGATGAAATGGCGAAAACACTTGCCAGGCGTCGAGCGCAGGCAGAAAAGAAGGAGCCGGACTCCAACGAGGATGGAGGTGCAGCTGGATCCGGT]
[+] EMBL BM629951 [CCGTGTTGGATTGAGTGGTATCACAACTACATCTTCGAGCAAAAAAGCGAGCAAAGCAACCGTTGCCGGAAGACAACACTACCGCACCGACTATCGAGGAGGCTGTGGTGCTAAACGGGATAAGGCAGCCTGTCCAGTCATTTCACCCGTCGTCCGTCAGCTGTTGGTTCGGCGATCCTGATCCATCCCGGAGCCAATAAAAAAGGCTTTTTGCATAAAATCTTAACAGCACAAACCACGATCGCGGATCGTCTTCCTTAAGCACAACAACAACAGCAAGATGAGCGAACAAAGCATCATTGGGGCCCGGGCCTCGGTCATGGTGTACGACGATGTGCAGCGGAAGTGGATACCGTCCGGCAGCTCGTCCGGTCTGAGCAAGGTGCAAATCTTCCACCATCAGCAAAACAACACGTTCCGCGTCGTCGGTCGGAAGCTGCAGGACCATG AGGTCGTCATCAACTGTTCGATCATCAAGGGGCTGAAGTATAATCAGGCCACCGCGACGTTTCACCAGTGGCGCGATTCCAAGTTCGTGTACGGGTTGAACTTCTCCAGCCCGATGGACGCGGAAGCGTTTGCCCGTGCGATGATGCACGCTTTGGATGTGCTGAGTGGACGCGTACCACCCTCG TCGACCATGCAAACGACCAATCCGAACCCGAGCCAGATGGCT ]
[+] EMBL BM650037 [ AAACAACACGTTCCGCGTCGTCGGTCGGAAGCTGCAGGACCATGCAGGTCGTCATCAACTGTTCGATCATCAAGGGGCTGAAGTATAATCAGGCCACCGCGACGTTTCACCAGTGGCGCGATTCCAAGTTCGTGTACGGGTTGAACTTCTCCAGCCCGATGGACGCGGAAGCGTTTGCCCGTGCGATGATGCACGCTTTGGATGTGCTGAGTGGACGCGTACCACCCTCGATCGACCATGCAAACGACCAATCCGAACCCGAGCCAGATGGCTGCGGCGTACGAGGAGGACATGGGCTACCGTACGATGACCCGTGAAGATGCGGCCATCATGCAGCAGCAGCAGCAAATGACTAGTCAACCGCCGGGCGTGGGACCACC ]
[+] EMBL CNS08WGL [ CATCATGCAGCAGCAGCAGCAAATGACTAGTCAACCGCCGGGCGTGGGACCACCACAGCAACCGCCGAACTCGATACCGGGCCCGGGCGGTGGCATACTATCCCCGCAAACGCCGACATCTCAAACGCTGCCATCACAAGCCACCCAGCAGCAGCAGCAGCAGCAGCAACAACAGACGCATCATCGTACAAACAGTGCACCACCGGTTCCGCCAGCGTTACCGACACAACAGCAGCAGCAGGCATCGCAGCAGTCACAGGCGCACAACAGCAGCAACAGAAACCGATCTATGCATCACAGCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGCAGCCGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAATCATCAAATGCTGAATCAGTCGGTGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACCTTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATCCAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGCAGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATGGTGTCGGCGGTCCGTACGGTGCTGGCCAACCACAGTACGGTATACCACCGGTTCCACAGATGCCAATGCAGAAGCCGCACCAGCAGCAACCACCGTCACAGATGCAGCAAACGAATGCTCCTCCACCACCGCCAATGATGCCGCCGATGTTCCCGATGGCGGCACCATCTAGCGTACCGCAGCCACCAGCACCGCCGATGCCACCAAATCTGAATAATGCGGCTGCTCCACCGCCGCCGCCACCACCGCCGGGCATGCCAGCGGTAAAGCCGGGAGAAATCAACTCCTTGGCCCTC ]
[-] EMBL CNS08WGM [ cCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGCAGCCGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAATCATCAAATGCTGAATCAGTTCGTGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACCTTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATCCAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGCAGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATGGTGTCGGCGGTCCGTACGGTGCTGGCCAACCACAGTACGGTATACCACCGGTTCCACAGATGCCAATGCAGCCGCCGCACCAGCAGCAACCACCGTCACAGATGCAGCAAACGAATGCTCCTCCACCACCGCCAATGATGCCGCCGATGTTCCCGATGGCGGCACCATCTAGCGTACCGCAGCCACCAGCACCGCCGATGCCACCAAATCTGAATAATGCGGCTGCTCCACCGCCGCCGCCACCACCGCCGGGCATGCCAGCGGTAAAGCCGGGAGAAATCAACTCCTTGGCCCTCCAGCTGGCCAGTGCCAAACTGAAACGCAGCCAACCGCCGAAAAGCTCGCCGGCCGCTGGCGTGTCGTCCACCTCTTCCTCCGCCAACAATGGCAGCAATGCCGTGTCGTCCACCGTGACGGAAAACAGTGGCAGCAGTACATCGAGCGGAGGTAGACGGTCGTCATCTGGTATGGCATCGATGATGGATGAAATGGCGAAAACACTTGCCAGGCGTCGAGCGCAGGCAGAAAAGAAGGAGCCGGACTCCAACGAGGATGGAGGTGCAGCTGGATCCGGT]
consensusID : consensus_6323#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[CCGGAGCTGTATGTCGTCTGGTGTGGTGTTACCAGTGAGTAGAGTACACATAACACATTGCCCGAGAGGTGGTGTCAAAGCTTGGGTCGTAGCGTGCGCGTGTAGCACTAGCAGAGCAAATTCACCAAAAGGCAGCATCCGCAATCCGCGACAATTTAGATGCACCACCGGTCCCGCCAGCGTTACCGACACAACAGCAGCAGCAGGCATCGCAACAGTCACAGGCGCAGCAACAGCAGCAACAGAAACCGATCTATGCATCACAGCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGCCGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAACCATCAAATGCTGAATCAGTCGGTGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACCTTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATCCAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGCAGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATGGTGTCGGCGGTCCGTACGGTGCTGGTCAACCACAGTACGGTATACCACCGGTTCCACAGATG]
[+] EMBL BM603986 [CCGGAGCTGTATGTCGTCTGGTGTGGTGTTACCAGTGAGTAGAGTACACATAACACATTGCCCGAGAGGTGGTGTCAAAGCTTGGGTCGTAGCGTGCGCGTGTAGCACTAGCAGAGCAAATTCACCAAAAGGCAGCATCCGCAATCCGCGACAATTTAGATGCACCACCGGTCCCGCCAGCGTTACCGACACAACAGCAGCAGCAGGCATCGCAACAGTCACAGGCGCAGCAACAGCAGCAACAGAAACCGATCTATGCATCACAGCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGCCGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAACCATCAAATGCTGAATCAGTCGGTGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACCTTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATCCAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGCAGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATGGTGTCGGCGGTCCGTACGGTGCTGGTCAACCACAGTACGGTATACCACCGGTTCCACAGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6323#0 CCGTGTTGGATTGAGTGGTATCACAACTACATCTTCGAGCAAAAAAGCGAGCAAAGCAAC 60
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 CGTTGCCGGAAGACAACACTACCGCACCGACTATCGAGGAGGCTGTGGTGCTAAACGGGA 120
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 TAAGGCAGCCTGTCCAGTCATTTCACCCGTCGTCCGTCAGCTGTTGGTTCGGCGATCCTG 180
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 ATCCATCCCGGAGCCAATAAAAAAGGCTTTTTGCATAAAATCTTAACAGCACAAACCACG 240
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 ATCGCGGATCGTCTTCCTTAAGCACAACAACAACAGCAAGATGAGCGAACAAAGCATCAT 300
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 TGGGGCCCGGGCCTCGGTCATGGTGTACGACGATGTGCAGCGGAAGTGGATACCGTCCGG 360
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 CAGCTCGTCCGGTCTGAGCAAGGTGCAAATCTTCCACCATCAGCAAAACAACACGTTCCG 420
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 CGTCGTCGGTCGGAAGCTGCAGGACCATGAGGTCGTCATCAACTGTTCGATCATCAAGGG 480
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 GCTGAAGTATAATCAGGCCACCGCGACGTTTCACCAGTGGCGCGATTCCAAGTTCGTGTA 540
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 CGGGTTGAACTTCTCCAGCCCGATGGACGCGGAAGCGTTTGCCCGTGCGATGATGCACGC 600
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 TTTGGATGTGCTGAGTGGACGCGTACCACCCTCGTCGACCATGCAAACGACCAATCCGAA 660
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 CCCGAGCCAGATGGCTGCGGCGTACGAGGAGGACATGGGCTACCGTACGATGACCCGTGA 720
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 AGATGCGGCCATCATGCAGCAGCAGCAGCAAATGACTAGTCAACCGCCGGGCGTGGGACC 780
consensus_6323#1 ------------------------------CCGGAGCTGTATGTCGTCTGGTGTGGTGTT 30
** ** ** * ** ****
consensus_6323#0 ACCACAGCAACCGCCGAACTCGATACCGGGCCCGGGCGGTGGCATACTATCCCCGCAAAC 840
consensus_6323#1 ACCAGTGAGTAGAGTACACATAACACATTGCCCGAGAGGTGGTGTCAAAGCTTGGGTCGT 90
**** * ** * ** ***** * ***** * * * *
consensus_6323#0 GCCG-ACATCTCAAACGCTGCCATCACAAGCCACCCAGCAGCAGCAGCAGCAGCAGCAAC 899
consensus_6323#1 AGCGTGCGCGTGTAGCACTAGCAGAGCAAATTCACCAAAAG-----GCAGCATCCGCAAT 145
** * * * * ** ** *** *** ** ****** * ****
consensus_6323#0 AACAGACGCATCATCGTACAAACAGTGCACCACCGGTTCCGCCAGCGTTACCGACACAAC 959
consensus_6323#1 C-----CGCGACAATTTA-----GATGCACCACCGGTCCCGCCAGCGTTACCGACACAAC 195
*** ** ** ************ **********************
consensus_6323#0 AGCAGCAGCAGGCATCGCAGCAGTCACAGGCGCA-CAACAGCAGCAACAGAAACCGATCT 1018
consensus_6323#1 AGCAGCAGCAGGCATCGCAACAGTCACAGGCGCAGCAACAGCAGCAACAGAAACCGATCT 255
******************* ************** *************************
consensus_6323#0 ATGCATCACAGCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGCAGC 1078
consensus_6323#1 ATGCATCACAGCAGAGCAACAGCAGTACCAACAGTATTACCTATGGAAACAACTCGC--- 312
*********************************************************
consensus_6323#0 CGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAATCATCAAATGCTGAATCAGTCGG 1138
consensus_6323#1 CGTATCCGCAGCCAATCTACGTAGCATCGAATCAAAACCATCAAATGCTGAATCAGTCGG 372
************************************* **********************
consensus_6323#0 TGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACC 1198
consensus_6323#1 TGTTGCCACCGCAACCGCCGCAGCAACCACCGCCACCACAGCAGCAGCTACCGTCGAACC 432
************************************************************
consensus_6323#0 TTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATC 1258
consensus_6323#1 TTTCGAACGGTTCGATTTACGCGACGGCCACGTGCTCCCCGAGCGCGACCAACAGCAATC 492
************************************************************
consensus_6323#0 CAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGC 1318
consensus_6323#1 CAGCGAACCCGATCTACGCCGGCCAACAGCAGCTCGTTTCACAGCAGCAACAGCAGCAGC 552
************************************************************
consensus_6323#0 AGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATG 1378
consensus_6323#1 AGTCCGCACCACCGCCGCCACCGATGATGATGCCACCGAACGGCTACGGACCACCGAATG 612
************************************************************
consensus_6323#0 GTGTCGGCGGTCCGTACGGTGCTGGCCAACCACAGTACGGTATACCACCGGTTCCACAGA 1438
consensus_6323#1 GTGTCGGCGGTCCGTACGGTGCTGGTCAACCACAGTACGGTATACCACCGGTTCCACAGA 672
************************* **********************************
consensus_6323#0 TGCCAATGCAGAAGCCGCACCAGCAGCAACCACCGTCACAGATGCAGCAAACGAATGCTC 1498
consensus_6323#1 TG---------------------------------------------------------- 674
**
consensus_6323#0 CTCCACCACCGCCAATGATGCCGCCGATGTTCCCGATGGCGGCACCATCTAGCGTACCGC 1558
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 AGCCACCAGCACCGCCGATGCCACCAAATCTGAATAATGCGGCTGCTCCACCGCCGCCGC 1618
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 CACCACCGCCGGGCATGCCAGCGGTAAAGCCGGGAGAAATCAACTCCTTGGCCCTCCAGC 1678
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 TGGCCAGTGCCAAACTGAAACGCAGCCAACCGCCGAAAAGCTCGCCGGCCGCTGGCGTGT 1738
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 CGTCCACCTCTTCCTCCGCCAACAATGGCAGCAATGCCGTGTCGTCCACCGTGACGGAAA 1798
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 ACAGTGGCAGCAGTACATCGAGCGGAGGTAGACGGTCGTCATCTGGTATGGCATCGATGA 1858
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 TGGATGAAATGGCGAAAACACTTGCCAGGCGTCGAGCGCAGGCAGAAAAGAAGGAGCCGG 1918
consensus_6323#1 ------------------------------------------------------------
consensus_6323#0 ACTCCAACGAGGATGGAGGTGCAGCTGGATCCGGT 1953
consensus_6323#1 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||