cluster # 6326

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Anopheles gambiae
cluster # 6326 cluster # 6326 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6326#0 length = 884 sequences # 4

consensus_6326#1 length = 383 sequences # 1

consensusID : consensus_6326#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 884
fasta sequence

                              [AGAATAGCTCAGGCAAGAATCGCCACGAGNTTGATGCGGACATATCGCTCAGTTTAAGGAGCGTTGCCGCCGAAAGCGCGCCCAGCTGCTGGCGATGGACGAGATGTACATCGAGCTGTCGAAGATGCCGGGCCACTGTGCGGACTCGTGCCGTCGCGATCTGGAGGCGGGCATGATCGGAAGCTTCCGCAAGCTGGAGGTCGACTAAACGACCGCCGCCTAAACGTTAAGATTGTTTGTAGGCTTAAGAAGATTGTATTATATTTCCAAC-GCACGAATCGGATTGCTTGCTAGTAAGATAAGAAATGAA-ACTAAACGCTCCTTCTAAA-CA-TATTAGACAGAACAGTGAATA-A-TA-GTACTCATGGAGGGGAACTTAC-TTCAATTATGGGGATGGGTATACA-TTATGCTCTATCATA-TCATTGGCGCATTGATGGATTGCTTCAGCGTTGATTATGCTTAACCTACGTACCCACTACCGAGACCCTTTTGTAAGATTTAGAAATGGCCACTAGGAACCCGAACCCGTTTTTTTTTTTCGACAAAAACAAAACAAAAAAATGCGGTAACCTTGTTCAGGCTGCAAGGAGAGGACTTTGGAGCAGGCACTGCACACGCTCTACTTTCTACTCCCCAAACACCAAAACTGTGATTTTGTTTTACTACTGCTACTACAGCTACTACTATTTCTGTTGTGTGGCTTTTTTTTTCCTTATAAACGATCATTTTCTTGTGCGTCGTAACACGGCCACGGTTGGCGTAATGGCTGTCTCCTGCGATCACATTGTTCGGCAGTGCGGAGTGGAGCTTGGAAGCCGTGTGGTAAAATTAACCACTACCAACTCTTGTCTTTGAGCACACATCTTGGGACAAAACTCTAAACCCTG]

[+] EMBL BX466498             [AGAATAGCTCAGGCAAGAATCGCCACGAGNTTGATGCGGACATATCGCTCAGTTTAAGGAGCGTTGCCGCCGAAAGCGCGCCCAGCTGCTGGCGATGGACGAGATGTACATCGAGCTGTCGAAGATGCCGGGCCACTGTGCGGACTCGTGCCGTCGCGATCTGGAGGCGGGCATGATCGGAAGCTTCCGCAAGCTGGAGGTCGACTAAACGACCGCCGCCTAAACGTTAAGATTGTTTGTAGGCTTAAGAAGATTGTATTATATTTCCAAC GCACGAATCGGATTGCTTGCTAGTAAGATAAGAAATGAAGACTAAACGCTCCTTCTAAAGCAGTATTAGACAGAACAGTGAATACACTAGGTACTCATGGAGGGGAACTTACGTTCAGTTATGGGGATGGGTATACAGTTATGCTCTATCATAGTCATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX623516             [                                                                                                                                                CTCGTGCCGTCGCGATCTGGAGGCGGGCATGATCGGAAGCTTCCGCAAGCTGGAGGTCGACTAAACGACCGCCGCCTAAACGTTAAGATTGTTTGTAGGCTTAAGAAGATTGTATTATATTTCCAAC GCACGAATCGGATTGCTTGCTAGTAAGATAAGAAATGAA ACTAAACGCTCCTTCTAAA CA TATTAGACAGAACAGTGAATA A TA GTACTCATGGAGGGGAACTTAC TTCAATTATGGGGATGGGTATACA TTATGCTCTATCATA TCATTGGCGCATTGATGGATTGCTTCAGCGTTGATTATGCTTAACCTACGTACCCACTACCGAGACCCTTTTGTAAGATTTAGAAATGGCCACTAGGAACCCGAACCCGTTTTTTTTTTTCGACAAAAACAAAACAAAAAAATGCGGTAACCTTGTTCAGGCTGCAAGGAGAGGACTTTGGAGCAGGCACTGCACACGCTCTACTTTCTACTCCCCAAACACCAAAACTGTGATTTTGTTTTACTACTGCTACTACAGCTACTACTATTTCTGTTGTGTGGCTTTTTTTTTCCTTATAAACGATCATTTTCTTGTGCGTCGTAACACGGCCACGGTTGGCGTAATGGCTGTCTCCTGCGATCACATTGTTCGGCAGTGCGGAGTGGAGCTTGGAAGCCGTGTGGTAAAATTAACCACTACCAACTCTTGTCTTTGAGCACACATCTTGGGACAAAACTCTAAACCCTG]
[+] EMBL BX619829             [                                                                                                                                                                                                                                                                           tAACGGCNCGAGGCGGATTGCTTGCTAGTAAGATAAGAAATGAA ACTAAACGCTCCTTCTAAA CA TATTAGACAGAACAGTGAATA A TA GTACTCATGGAGGGGAACTTAC TTCAATTATGGGGATGGGTATACA TTATGCTCTATCATA TCATTGGCGCATTGATGGATTGCTTCAGCGTTGATTATGCTTAACCTACGTACCCACTACCGAGACCCTTTTGTAAGNTTTAGAAATGGCCACTAGGAACCCGAACCCGTTTTTTTTTTTCGACAAAAACAAAACAAAAAAATGCGGTAACCTTGTTCAGGCTGCAAGGAGAGGACTTTGGAGCAGGCACTGCACACGCTCTACTTTCTACTCCCCAAACATCAAAACTGTGATTTTGTTTTACTACTGCTACTACAGCTACTACTATTTCTGTTGTGTGGCTTTTTTTTTCCTTATAAACGATCATT                                                                                                                                                                ]
[+] EMBL BX626660             [                                                                                                                                                                                                                                                                                                                                                        GAACAGTGAATA A TA NTACTCATGGAGGGGAACTTAC TTCAATTATGGGGATGGGTATACA TTATGCTCTATCATA TCATTGGCGCATTGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_6326#0
AGAATAGCTCAGGCAAGAATCGCCACGAGNTTGATGCGGACATATCGCTCAGTTTAAGGA
GCGTTGCCGCCGAAAGCGCGCCCAGCTGCTGGCGATGGACGAGATGTACATCGAGCTGTC
GAAGATGCCGGGCCACTGTGCGGACTCGTGCCGTCGCGATCTGGAGGCGGGCATGATCGG
AAGCTTCCGCAAGCTGGAGGTCGACTAAACGACCGCCGCCTAAACGTTAAGATTGTTTGT
AGGCTTAAGAAGATTGTATTATATTTCCAACGCACGAATCGGATTGCTTGCTAGTAAGAT
AAGAAATGAAACTAAACGCTCCTTCTAAACATATTAGACAGAACAGTGAATAATAGTACT
CATGGAGGGGAACTTACTTCAATTATGGGGATGGGTATACATTATGCTCTATCATATCAT
TGGCGCATTGATGGATTGCTTCAGCGTTGATTATGCTTAACCTACGTACCCACTACCGAG
ACCCTTTTGTAAGATTTAGAAATGGCCACTAGGAACCCGAACCCGTTTTTTTTTTTCGAC
AAAAACAAAACAAAAAAATGCGGTAACCTTGTTCAGGCTGCAAGGAGAGGACTTTGGAGC
AGGCACTGCACACGCTCTACTTTCTACTCCCCAAACACCAAAACTGTGATTTTGTTTTAC
TACTGCTACTACAGCTACTACTATTTCTGTTGTGTGGCTTTTTTTTTCCTTATAAACGAT
CATTTTCTTGTGCGTCGTAACACGGCCACGGTTGGCGTAATGGCTGTCTCCTGCGATCAC
ATTGTTCGGCAGTGCGGAGTGGAGCTTGGAAGCCGTGTGGTAAAATTAACCACTACCAAC
TCTTGTCTTTGAGCACACATCTTGGGACAAAACTCTAAACCCTG

consensusID : consensus_6326#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence

                              [AGGGGAACTTACTTCAATTATGGGGATGGGTATACNGTNATGCTCTATCATATCATTGGCGCATTGATGGATTGCTTCAGCGTTGATTATGCTTAACCTACGTACCCACTACCGAGNACCCTTTTGTAAGATTTAGAAATGGCCATCTAGGAACCCGAACCCGTTTTTTTTNTTTCGACAAAAACCAAAAACCAAAAAAAATNNCGGGTAACCCTTGTTTTTATTGCCNNCCAAANNNNAGGAGGGNACNNNTTGGGGAAGGCCAGCGGCCAACTTGGNCAACCAACGCCCNNCTTAANNNNNTCNNNTTACCNTCCCNCCCCAAAAAACCACCCCAAAAAAAACTTGGTTGAAATTTTTTGGNTTTTTAAACTTAANTTGGC]

[+] EMBL BX619697             [AGGGGAACTTACTTCAATTATGGGGATGGGTATACNGTNATGCTCTATCATATCATTGGCGCATTGATGGATTGCTTCAGCGTTGATTATGCTTAACCTACGTACCCACTACCGAGNACCCTTTTGTAAGATTTAGAAATGGCCATCTAGGAACCCGAACCCGTTTTTTTTNTTTCGACAAAAACCAAAAACCAAAAAAAATNNCGGGTAACCCTTGTTTTTATTGCCNNCCAAANNNNAGGAGGGNACNNNTTGGGGAAGGCCAGCGGCCAACTTGGNCAACCAACGCCCNNCTTAANNNNNTCNNNTTACCNTCCCNCCCCAAAAAACCACCCCAAAAAAAACTTGGTTGAAATTTTTTGGNTTTTTAAACTTAANTTGGC]




>consensus_6326#1
AGGGGAACTTACTTCAATTATGGGGATGGGTATACNGTNATGCTCTATCATATCATTGGC
GCATTGATGGATTGCTTCAGCGTTGATTATGCTTAACCTACGTACCCACTACCGAGNACC
CTTTTGTAAGATTTAGAAATGGCCATCTAGGAACCCGAACCCGTTTTTTTTNTTTCGACA
AAAACCAAAAACCAAAAAAAATNNCGGGTAACCCTTGTTTTTATTGCCNNCCAAANNNNA
GGAGGGNACNNNTTGGGGAAGGCCAGCGGCCAACTTGGNCAACCAACGCCCNNCTTAANN
NNNTCNNNTTACCNTCCCNCCCCAAAAAACCACCCCAAAAAAAACTTGGTTGAAATTTTT
TGGNTTTTTAAACTTAANTTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6326#0      AGAATAGCTCAGGCAAGAATCGCCACGAGNTTGATGCGGACATATCGCTCAGTTTAAGGA 60
consensus_6326#1      ------------------------------------------------------------
                                                                                  

consensus_6326#0      GCGTTGCCGCCGAAAGCGCGCCCAGCTGCTGGCGATGGACGAGATGTACATCGAGCTGTC 120
consensus_6326#1      ------------------------------------------------------------
                                                                                  

consensus_6326#0      GAAGATGCCGGGCCACTGTGCGGACTCGTGCCGTCGCGATCTGGAGGCGGGCATGATCGG 180
consensus_6326#1      ------------------------------------------------------------
                                                                                  

consensus_6326#0      AAGCTTCCGCAAGCTGGAGGTCGACTAAACGACCGCCGCCTAAACGTTAAGATTGTTTGT 240
consensus_6326#1      ------------------------------------------------------------
                                                                                  

consensus_6326#0      AGGCTTAAGAAGATTGTATTATATTTCCAACGCACGAATCGGATTGCTTGCTAGTAAGAT 300
consensus_6326#1      ------------------------------------------------------------
                                                                                  

consensus_6326#0      AAGAAATGAAACTAAACGCTCCTTCTAAACATATTAGACAGAACAGTGAATAATAGTACT 360
consensus_6326#1      ------------------------------------------------------------
                                                                                  

consensus_6326#0      CATGGAGGGGAACTTACTTCAATTATGGGGATGGGTATACA-TTATGCTCTATCATATCA 419
consensus_6326#1      -----AGGGGAACTTACTTCAATTATGGGGATGGGTATACNGTNATGCTCTATCATATCA 55
                           ***********************************  * ****************

consensus_6326#0      TTGGCGCATTGATGGATTGCTTCAGCGTTGATTATGCTTAACCTACGTACCCACTACCGA 479
consensus_6326#1      TTGGCGCATTGATGGATTGCTTCAGCGTTGATTATGCTTAACCTACGTACCCACTACCGA 115
                      ************************************************************

consensus_6326#0      GA-CCCTTTTGTAAGATTTAGAAATGGCCA-CTAGGAACCCGAACCCGTTTTTTTTTTT- 536
consensus_6326#1      GNACCCTTTTGTAAGATTTAGAAATGGCCATCTAGGAACCCGAACCCGTTTTTTTTNTTT 175
                      *  *************************** ************************* ** 

consensus_6326#0      CGACAAAAAC--AAAAC--AAAAAAATGC--GGTAACC-TTGTTCAGGCTGCAAGGAGAG 589
consensus_6326#1      CGACAAAAACCAAAAACCAAAAAAAATNNCGGGTAACCCTTGTTTTTATTGCCNNCCAAA 235
                      **********  *****  ********    ******* *****     ***      * 

consensus_6326#0      GACTTTG-GAGCAGGCACTGCACACGCTCTACTTTCTACTCCCCAAAC--ACCAAAACTG 646
consensus_6326#1      NNNNAGGAGGGNACNNNTTGGGGAAGGCCAGCGGCCAACTTGGNCAACCAACGCCCNNCT 295
                            * * * *     **   * *  *  *   * ***     ***  **        

consensus_6326#0      TGATTTTGTTTTACTACTGCTACTACAGCTACTACTATTTCTG-------TTGTGTGGCT 699
consensus_6326#1      TAANNNNNTCNNNTTACCNTCCCNCCCCAAAAAACCACCCCAAAAAAAACTTGGTTGAAA 355
                      * *     *     ***     *  *    *  ** *   *         ***  **   

consensus_6326#0      TTTTTTTTCCTTATAAACGATCATTTTCTTGTGCGTCGTAACACGGCCACGGTTGGCGTA 759
consensus_6326#1      TTTTTTGGNTTTTTAAACTTAANTTGGC-------------------------------- 383
                      ******    ** *****     **  *                                

consensus_6326#0      ATGGCTGTCTCCTGCGATCACATTGTTCGGCAGTGCGGAGTGGAGCTTGGAAGCCGTGTG 819
consensus_6326#1      ------------------------------------------------------------
                                                                                  

consensus_6326#0      GTAAAATTAACCACTACCAACTCTTGTCTTTGAGCACACATCTTGGGACAAAACTCTAAA 879
consensus_6326#1      ------------------------------------------------------------
                                                                                  

consensus_6326#0      CCCTG 884
consensus_6326#1      -----