cluster # 6334

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Anopheles gambiae
cluster # 6334 cluster # 6334 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6334#0 length = 533 sequences # 4

consensus_6334#1 length = 436 sequences # 1

consensusID : consensus_6334#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 533
fasta sequence

                              [TTTTTTTT---TTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGTGTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGTCCGTTAACACCCCTCCTCAAACATATAACGGTTCAACTCCCAAGACGGCTCGATGTTTGACAAACGATACCTGAGGAAGTCCCTTTGTTAAAATGTCTGCTGGTTGATCAGTGGTTGGGATGTAGCACAGCTTCACTCTTTCTTCATGGACACACTGCTTGATAAAGTGCAATTTGATTTCAGTGTGCTTGAGCCTTTTCGACGAACCATTCGAATTTGCTATAGCTATAGCAGACTGATTGTCTTCGAAGACTTCTACAGGTAGATTATCTCGAAGGCTCAGCTCCTCGAATAGTTTGCATGTCCACAGTACCTCACAGATGCAGTCGGATAGAGCTGAACATTCTGCTTCAGTTGATGACAATGCTACTGTCCGCTGCTTTTTAGTGCTCCAAGCAGTAGTTGCCCCATAG]

[+] EMBL AGA281635            [TTTTTTTT   TTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGTGTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGTCCGTTAACACCCCTCCTCAAACATATAACGGTTCAACTCCCAAGACGGCTCGATGTTTGACAAACGATACCTGAGGAAGTCCCTTTGTTAAAATGTCTGCTGGTTGATCAGTGGTTGGGATGTAGCACAGCTTCACTCTTTCTTCATGGACACACTGCTTGATAAAGTGCAATTTGATTTCAGTGTGCTTGAGCCTTTTCGACGAACCATTCGAATTTGCTATAGCTATAGCAGACTGATTGTCTTCGAAGACTTCTACAGGTAGATTATCTCGAAGGCTCAGCTCCTCGAATAGTTTGCATGTCCACAGTACCTCACAGATGCAGTCGGATAGAGCTGAACATTCTGCTTCAGTTGATGACAATGCTACTGTCCGCTGCTTTTTAGTGCTCCAAGCAGTAGTTGCCCCATAG]
[+] EMBL AGA280994            [TTTTTTTTCGGTTCAGTTAACAAAAGCAAAAAGAAATATATTCTGTCAGATTGACATATTGGTGTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGTCCGTTAACACCCCTCCTCAAACATATAACGGTTCAACTCCCAAGACGGCTCGATGTTTGACAAACGATACCTGAGGAAGTCCCTTTGTTAAAATGTCTGCTGGTTGATCAGTGGTTGGGATGTAGCACAGCTTCACTCTTTCTTCATGGACACACTGCTTGATAAAGTGCAATTTGATTTCAGTGTGCTTGAGCCTTTTCGACGAACCATTCGAATTTGCTATAGCTATAGCAGACTGATTGTCTTCCAAGACTTCTACAGGT                                                                                                                                                      ]
[+] EMBL AGA280382            [ TTTTTTT   TCCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGTGTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGTCCGTTAACACCCCTCCTCAAACATATAACGGTTCAACTCCCAAGACGGCTCGATGTTTGACAAACGATACCTGAGGAAGTCCCTTTGTTAAAATGTCTGCTGGTTGATCAGTGGTTGGGATGTAGCACAGCTTCACTCTTTCTTCATGGACACACTGCTTGATAAAGTGCAATTTGATTTCAGTGTGCTTGAGCCTTTTCGACGAACCATTCGAATTTGCTATAGCTATAGCAGACTGATTGTCTTCGAAGACTTCTACAGGT                                                                                                                                                      ]
[-] EMBL AGA282624            [                                                                                                                             GTTAACACCCCTCCTCAAACATATAACGGTTCAACTCCCAAGACGGCTCGATGTTTGACAAACGATACCTGAGGAAGTCCCTTTGTTAAAATGTCTGCTGGTTGATCAGTGGTTGGGATGTAGCACAGCTTCACTCTTTCTTCATGGACACACTGCTTGATAAAGTGCAATTTGATTTCAGTGTGCTTGAGCCTTTTCGACGAACCATTCGAATTTGCTATAGCTATAGCAGACTGATTGTCTTCGAAGACTTCTACAGGTAGATTATCTCGAAGGCTCAGCTCCTCGAATAGTTTGCATGTCCACAGTACCTCACAGATGCAGTCGGATAGAGCTGAACATTCTGCTTCAGTTGATGACAATGCTACTGTCCGCTGCTTTTTAGTGCTCCAATCAc              ]




>consensus_6334#0
TTTTTTTTTTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGT
GTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGT
CCGTTAACACCCCTCCTCAAACATATAACGGTTCAACTCCCAAGACGGCTCGATGTTTGA
CAAACGATACCTGAGGAAGTCCCTTTGTTAAAATGTCTGCTGGTTGATCAGTGGTTGGGA
TGTAGCACAGCTTCACTCTTTCTTCATGGACACACTGCTTGATAAAGTGCAATTTGATTT
CAGTGTGCTTGAGCCTTTTCGACGAACCATTCGAATTTGCTATAGCTATAGCAGACTGAT
TGTCTTCGAAGACTTCTACAGGTAGATTATCTCGAAGGCTCAGCTCCTCGAATAGTTTGC
ATGTCCACAGTACCTCACAGATGCAGTCGGATAGAGCTGAACATTCTGCTTCAGTTGATG
ACAATGCTACTGTCCGCTGCTTTTTAGTGCTCCAAGCAGTAGTTGCCCCATAG

consensusID : consensus_6334#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [TTTTTTTTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGTGTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGTCCGTTAACACAAATCTCGAATCTGGCGATGTACTTGTTCCTTAAGATGTCCATCTCGCTCCATCCTCCTCTCCAAACAATTGAACCTACGACGCGCCATGTCGATGCTAGGAGGTAGCTCGATGTCATCTTTCCTCCACAGTAATCCCGATTCGAATCGCTTCCCGATTCGTGCCGTGGTAGTGTCCAGAATCTGCTTCGCACGCCGCTCATCTGGATCCTGTTCGACGCCGTGTGCAGCACCAATCAACTGCATGTCGAAATATTCCCGAATCGTCTCGTGAATGTTACCTTGGTCGTTGCACTCGCAAATATTCAA]

[+] EMBL AGA280510            [TTTTTTTTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGTGTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGTCCGTTAACACAAATCTCGAATCTGGCGATGTACTTGTTCCTTAAGATGTCCATCTCGCTCCATCCTCCTCTCCAAACAATTGAACCTACGACGCGCCATGTCGATGCTAGGAGGTAGCTCGATGTCATCTTTCCTCCACAGTAATCCCGATTCGAATCGCTTCCCGATTCGTGCCGTGGTAGTGTCCAGAATCTGCTTCGCACGCCGCTCATCTGGATCCTGTTCGACGCCGTGTGCAGCACCAATCAACTGCATGTCGAAATATTCCCGAATCGTCTCGTGAATGTTACCTTGGTCGTTGCACTCGCAAATATTCAA]




>consensus_6334#1
TTTTTTTTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGTGT
ATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGTCC
GTTAACACAAATCTCGAATCTGGCGATGTACTTGTTCCTTAAGATGTCCATCTCGCTCCA
TCCTCCTCTCCAAACAATTGAACCTACGACGCGCCATGTCGATGCTAGGAGGTAGCTCGA
TGTCATCTTTCCTCCACAGTAATCCCGATTCGAATCGCTTCCCGATTCGTGCCGTGGTAG
TGTCCAGAATCTGCTTCGCACGCCGCTCATCTGGATCCTGTTCGACGCCGTGTGCAGCAC
CAATCAACTGCATGTCGAAATATTCCCGAATCGTCTCGTGAATGTTACCTTGGTCGTTGC
ACTCGCAAATATTCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6334#0      TTTTTTTTTTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGT 60
consensus_6334#1      --TTTTTTTTCAGTTAACAAAAGCAAAGAGAAATATATTCTGTCAGATTGACATATTGGT 58
                        **********************************************************

consensus_6334#0      GTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGT 120
consensus_6334#1      GTATGGTGTCATTTGTTGTGCAGGGTTCTTCGGTGTACAACTACGTCGTTCTATGTTTGT 118
                      ************************************************************

consensus_6334#0      CCGTTAACACCCCTCCTCAAACATATAACG-GTTCAACTCCCAAGACGGCTCGATGTTTG 179
consensus_6334#1      CCGTTAACACAAATCTCGAATCTGGCGATGTACTTGTTCCTTAAGATG--TCCATCTCGC 176
                      **********   **   ** *     * *   *     *  **** *  ** ** *   

consensus_6334#0      ACAAACGATACCTGAGGAAGTCCCTTTGTTAAAATGTCTGCTGGTTGATCAGTGGTTGGG 239
consensus_6334#1      TCCATCCTCCTCTCCAAACA-------ATTGAACCTACGACGCGCCATGTCGATGCTAGG 229
                       * * *     **    *          ** **    *  *  *       *  * * **

consensus_6334#0      ATGTAGCACAGCTTCACTCTTTCTTCATGGACACACTGCTTGATAAAGTGCAATTTGATT 299
consensus_6334#1      AGGTAGCTCGATGTCATCTTTCCTCCACAGTAATCCCGATT--CGAATCGCTTCCCGATT 287
                      * ***** *    ***   ** ** **  *  *  * * **    **  **     ****

consensus_6334#0      TCAGTGTGCTTGAGCCTTTTCGACGAACCATTCGAATTTGCTATAGCTATAGCAGACT-- 357
consensus_6334#1      ----CGTGCCGTGGTAGTGTCCA----------GAATCTGCTTCGCACGCCGCTCATCTG 333
                           ****    *   * ** *          **** ****         **  *    

consensus_6334#0      GATTGTCTTCGAAGACTTCTACAG-GTAGATTATCTCGAAGGCTCAGC-TCCTCGAATAG 415
consensus_6334#1      GATCCTGTTCGACGCCGTGTGCAGCACCAATCAACTGCATGTCGAAATATTCCCGAATCG 393
                      ***  * ***** * * * * ***     ** * **  * * *  *   * * ***** *

consensus_6334#0      TTTGCATGTCCACAGTACCTCA-CAGATGCAGTCGGATAGAGCTGAACATTCTGCTTCAG 474
consensus_6334#1      TCT---CGTGAATGTTACCTTGGTCGTTGCACTCGCAAATATTCAA-------------- 436
                      * *    **  *   *****     * **** *** * * *    *              

consensus_6334#0      TTGATGACAATGCTACTGTCCGCTGCTTTTTAGTGCTCCAAGCAGTAGTTGCCCCATAG 533
consensus_6334#1      -----------------------------------------------------------