These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 861 fasta sequence [TGATAAGTATAGGACAGTTTTCATTTTTTTAAAAAGCAAACAACACTCGCTGAAAGCAATTTATCTTTGAAAACACTGAACCGTGTTTTTCCCCCCATTTGTTTTACTGCAACACACAAAAGTAGCCGCGAAAAACTCCTTGTCCGAAGAG-TCGTGTTTTGAGTTTGGGGTTTCCTTTTCGCAAAAAATCATCATTCACTTGTATAAAGGAGGAATTTATCATGAAACAGGATAATGGAATGCGTGCGTGCAAAGCGTTGTAGTAGCAGTAGTAGTGCAGTAGAAAAGTCAGTCAGAAAAGAAAAGAAGTCAGAAGTGATTGGAGGAATGGAAAGGAATACTCGGACACTGCGACACGCCGAACAAGCAGAAAACCATATTGTAAAGTTACTCGATACTCACGCGTGGATGAGACAGATAGACACACCAGAGATGATGGGCAAAGAGGTTCGGTGGGTGTGCAGATAGCGAAAAAGCGAAAACACAGCTCTAAACGTAATTTAAATAATCTTTTGAACACTAATTTAAAGTAGATAAGTAAGTAAAAATGTAGACATGTGCGTGCAGCAAGGGAGAAGGGTAAACGCAGACCCTTCCCGTTCTCGCGTTTATGGTGCGATAAGGATAAGAAAATGAGGGGAAAGTAACGAATGAAAAGAGGAGGCATCACATCA-GGAGGCCAAACAGAATTATTTTAGTTTCA-TTTTCCACTGCACAACACAACCATCAACCAAACGAATCAATGAATCAGTTGGCAACAGTAATTAGTTTATCGAATGGGGGGGGGGGGTACATCACGTCTCTTTCTTCCGCTACACTTACTTGCTTCCGTTTGTTTAACTCNATAATCGGAAAAGTGCT] [+] EMBL BX628808 [TGATAAGTATAGGACAGTTTTCATTTTTTTAAAAAGCAAACAACACTCGCTGAAAGCAATTTATCTTTGAAAACACTGAACCGTGTTTTTCCCCCCATTTGTTTTACTGCAACACACAAAAGTAGCCGCGAAAAACTCCTTGTCCGAAGAGTTCGTGTTTTGAGTTTGGGGTTTCCTTTTCGCAAAAAATCATCATTCACTTGTATAAAGGAGGAATTTATCATGAAACAGGATAATGGAATGCGTGCGTGCAAAGCGTTGTAGTAGCAGTAGTAGTGCAGTAGAAAAGTCAGTCAGAAAAGAAAAGAAGTCAGAAGTGATTGGAGGAATGGAAAGGAATACTCGGACACTGCGACACGCCGAACAAGCAGAAAACCATATTGTAAAGTTACTCGATACTCACGCGTGGATGAGACAGATAGACACACCAGAGATGATGGGCAAAGAGGTTCGGTGGGTGTGCAGATAGCGAAAAAGCGAAAACACAGCTCTAAACGTAATTTAAATAATCTTTTGAACACTAATTTAAAGTAGATAAGTAAGTAAAAATGTAGACATGTGCGTGCAGCAAGGGAGAAGGGTAAACGCAGACCCTTCCCGTTCTCGCGTTTATGGTGCGATAAGGATAAGAAAATGAGGGGAAAGTAACGAATGAAAAGAGGAGGCATCACATCA GGAGGCCAAACAGAATTATTTTAGTTTCA TTTTCCACTGCACAACACAACCATCAACCAAACGAATCAATGAATCAGTTGGCAACAGTAATTAGTTTATCGAAT ] [+] EMBL BX628741 [ CAGTTTTCATTTTTTTAAAAAGCAAACAACACTCGCTGAAAGCAATTTATCTTTGAAAACACTGAACCGTGTTTTTCCCCCCATTTGTTTTACTGCAACACACAAAAGTAGCCGCGAAAAACTCCTTGTCCGAAGAG TCGTGTTTTGAGTTTGGGGTTTCCTTTTCGCAAAAAATCATCATTCACTTGTATAAAGGAGGAATTTATCATGAAACAGGATAATGGAATGCGTGCGTGCAAAGCGTTGTAGTAGCAGTAGTAGTGCAGTAGAAAAGTCAGTCAGAAAAGAAAAGAAGTCAGAAGTGATTGGAGGAATGGAAAGGAATACTCGGACACTGCGACACGCCGAACAAGCAGAAAACCATATTGTAAAGTTACTCGATACTCACGCGTGGATGAGACAGATAGACACACCAGAGATGATGGGCAAAGAGGTTCGGTGGGTGTGCAGATAGCGAAAAAGCGAAAACACAGCTCTAAACGTAATTTAAATAATCTTTTGAACACTAATTTAAAGTAGATAAGTAAGTAAAAATGTAGACATGTGCGTGCAGCAAGGGAGAAGGGTAAACGCAGACCCTTCCCGTTCTCGCGTTTATGGTGCGATAAGGATAAGAAAATGAGGGGAAAGTAACGAATGAAAAGAGGAGGCATCACATCA GGAGGCCAAACAGAATTATTTTAGTTTCA TTTTCCACTGCACAACACAACCATCAACCAAACGAATCAATGAATCAGTTGGCAACAGTAATTAGTTTATCGAATGGGGGGGG ] [+] EMBL BX620648 [ TTTGAAAACACTGAACCGTGTTTTTCCCCCCATTTGTTTTACTGCAACACACAAAAGTAGCCGCGAAAAACTCCTTGTCCGAAGAG TCGTGTTTTGAGTTTGGGGTTTCCTTTTCGCAAAAAATCATCATTCACTTGTATAAAGGAGGAATTTATCATGAAACAGGATAATGGAATGCGTGCGTGCAAAGCGTTGTAGTAGCAGTAGTAGTGCAGTAGAAAAGTCAGTCAGAAAAGAAAAGAAGTCAGAAGTGATTGGAGGAATGGAAAGGAATACTCGGACACTGCGACACGCCGAACAAGCAGAAAACCATATTGTAAAGTTACTCGATACTCACGCGTGGATGAGACAGATAGACACACCAGAGATGATGGGCAAAGAGGTTCGGTGGGTGTGCAGATAGCGAAAAAGCGAAAACACAGCTCTAAACGTAATTTAAATAATCTTTTGAACACTAATTTAAAGTAGATAAGTAAGTAAAAATGTAGACATGTGCGTGCAGCAAGGGAGAANGGTAAACGCAGACCCTTCCCGTTCTCGCGTTTATGGTGCGATAAGGATAAGAAAATGAGGGGAAAGTAACGAATGAAAAGAGGAGGCATCACATCN GGAGGCCAAACAGAATTATTTTAGTTTCATTTTTCCAC ] [+] EMBL BX625560 [ ATGTGCGTGCAGCAAGGGAGAAGGGTAAACGCAGACCCTTCCCGTTCTCGCGTTTATGGTGCNATAAGGATAAGAAAATGAGGGGAAAGTAACGAATGAANAGAGGAGGCATCACATCATNGAGGCCAAACAGAATTATTTTAGTTTCA TTTTCCNCTGCACAACACGACCATCAACCAAACGAATCAATGAATCAGTTGGCAACAGTANTTAGTTTATCNAATGGGGGGGGGGGGTACATCACGTCTCTTTCTTCCGCTACACTTACTTGCTTCCGTTTGTTTAACTCNATAATCGGAAAAGTGCT] consensusID : consensus_6336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [CCGCACAACACAACCATCAACCAAACGTATCAATGAATCAGTTGACAACAGTAATTAGTTCATCGAATGGGGAGGTACATCACGTCTCTTTCTTCCGCTACACTTACTTGCTTCCGTTTGTTTAACTCAATAATTGGAAAAGTGCTCTACCGTGTGGAGAACAAACGCATGTAAACGCATGTATTAAGTTCTATCACACGAAAGCTGAGTCATCATGTCGGACATAGTTCGAACAACAAGCGCGGGTATAGTCTTCGTTTTTCCCCCCCATTTATAACAACTCTACTTTTTAGTCGATTGTTTTCCACAATACAGATGATATACAACCAACTTCCAAAGTCGCTTGGATTCCAATTTTGTGTAAGCTTAGGAAAACCACTTTCGCGTTTTTTTTCTGTTTATTTCCATCCATCTGTAACTCATTGTAAAGAGGAAAAGTAAGGAATGAGAATAGTATTAAACGAAACGAAACGTAAAATCGGGACTGCACTATGGGAAATGAATAAT] [+] EMBL BM652541 [CCGCACAACACAACCATCAACCAAACGTATCAATGAATCAGTTGACAACAGTAATTAGTTCATCGAATGGGGAGGTACATCACGTCTCTTTCTTCCGCTACACTTACTTGCTTCCGTTTGTTTAACTCAATAATTGGAAAAGTGCTCTACCGTGTGGAGAACAAACGCATGTAAACGCATGTATTAAGTTCTATCACACGAAAGCTGAGTCATCATGTCGGACATAGTTCGAACAACAAGCGCGGGTATAGTCTTCGTTTTTCCCCCCCATTTATAACAACTCTACTTTTTAGTCGATTGTTTTCCACAATACAGATGATATACAACCAACTTCCAAAGTCGCTTGGATTCCAATTTTGTGTAAGCTTAGGAAAACCACTTTCGCGTTTTTTTTCTGTTTATTTCCATCCATCTGTAACTCATTGTAAAGAGGAAAAGTAAGGAATGAGAATAGTATTAAACGAAACGAAACGTAAAATCGGGACTGCACTATGGGAAATGAATAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6336#0 TGATAAGTATAGGACAGTTTTCATTTTTTTAAAAAGCAAACAACACTCGCTGAAAGCAAT 60 consensus_6336#1 ------------------------------------------------------------ consensus_6336#0 TTATCTTTGAAAACACTGAACCGTGTTTTTCCCCCCATTTGTTTTACTGCAACACACAAA 120 consensus_6336#1 -----CCGCACAACAC--AACCAT-------CAACCAAACGTATCAATGAATCAGTTGAC 46 * ***** **** * * *** ** * * ** * ** * consensus_6336#0 AGTAGCCGCGAAAAACTCCTTGTCCGAAGAGTCGTGTTTTGAGTTTGGGGTTTCCTTTTC 180 consensus_6336#1 AACA---GTAATTAGTTCATCGAATGGGGAG--GTACATCACGTCTCTTTCTTCCGCTAC 101 * * * * * ** * * * *** ** * ** * **** * * consensus_6336#0 GCAAAAAATCATC-ATTCACTTGTATAAAGGAGGAATTTATCATGAAACAGGATAATGGA 239 consensus_6336#1 ACTTACTTGCTTCCGTTTGTTTAACTCAATAATTGGAAAAGTGCTCTACCGTGTGG-AGA 160 * * * ** ** ** * ** * * ** * * ** consensus_6336#0 ATGCGTGCGTGCAAAGCGTTGTAGTAGCAGTAGTAGTGCAGTAGAAAAGTCAGTCAGAAA 299 consensus_6336#1 ACAAACGCATGTAAACGCATGTATTA--AGTTCTATCACA--CGAAAGCTGAGTCATCAT 216 * ** ** *** **** ** *** ** ** **** * ***** * consensus_6336#0 AGAAAAGAAGTCAGAAGTGATTGGAGGAATGGAAAGGAATACTCGGACACTGCGACACGC 359 consensus_6336#1 ---------GTCGGACATAGTTCGAACAACAAGCGCGGGTA--TAGTCTTCGTTTTTCCC 265 *** ** * ** ** ** * ** * * * * * consensus_6336#0 CGAACAAGCAGAA-AACCATATTGTAAAGTTACTCGATACTCACGCGTGGATGAGACAGA 418 consensus_6336#1 CCC-CATTTATAACAACTCTACTTTTTAGTCGATTGTTTTCCACA--------ATACAGA 316 * ** * ** *** ** * * *** * * * *** * ***** consensus_6336#0 TAGACACACCAGAGATGATGGGCAAAGAGGTTCGGTGGGTGTGCAGATAGCGAAAAAGCG 478 consensus_6336#1 T-GATATAC---AACCAACTTCCAAAGTCGCT---TGGATTCCAATTTTGTGTAAGCTTA 369 * ** * ** * * ***** * * *** * * * * * ** consensus_6336#0 AAAACACAGCTCTAAACGTAATTTAAATAATCTTTTGAACACTAATTTAAAGTAGATAAG 538 consensus_6336#1 GGAAAACCACTTTCG-CGTTTTTTTTCTGTTTATTT--CCATCCATCTGTAACTCATTGT 426 ** ** ** * *** *** * * *** ** ** * * ** consensus_6336#0 TAAGTAAAAATGTAGACATGTGCGTGCAGCAAGGGAGAAGGGTAAACGCAGACCCTTCCC 598 consensus_6336#1 AAAGAGGAAAAGTAAGGA-ATGAGAATAGTATTAAACGAAACGAAACGTAAAA------- 478 *** *** *** * ** * ** * * * ***** * * consensus_6336#0 GTTCTCGCGTTTATGGTGCGATAAGGATAAGAAAATGAGGGGAAAGTAACGAATGAAAAG 658 consensus_6336#1 --TCGGGACTGCACTATGGGAAATGAATAAT----------------------------- 507 ** * * * ** ** * * **** consensus_6336#0 AGGAGGCATCACATCAGGAGGCCAAACAGAATTATTTTAGTTTCATTTTCCACTGCACAA 718 consensus_6336#1 ------------------------------------------------------------ consensus_6336#0 CACAACCATCAACCAAACGAATCAATGAATCAGTTGGCAACAGTAATTAGTTTATCGAAT 778 consensus_6336#1 ------------------------------------------------------------ consensus_6336#0 GGGGGGGGGGGGTACATCACGTCTCTTTCTTCCGCTACACTTACTTGCTTCCGTTTGTTT 838 consensus_6336#1 ------------------------------------------------------------ consensus_6336#0 AACTCNATAATCGGAAAAGTGCT 861 consensus_6336#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||