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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1258 fasta sequence
[CCGGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGGGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGCGTCCGCCGGTGTGACTGCTGGGACGCGCGTCTCCGAACCGAAGGAGGTGCTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATCGGAGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCATGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGACCCGAGGCGCAAAAGAAGCGTCCGGTGATACCACCTTCCAACATTAATGGCACTGATCCGCAAATCACGCAATGGGCAATCCATCTGTTCCGCTGGCTGTACTCCGACCTGGTGGTGGTGAACAAGCTGCTCCAGGATTGGGTGGCCACCGTCAACACGGCACTGCTGACGCACGTCGAGCAGCACGAAATGATTGTGGAGGTGGTGCGCGTCCTGCCGGAAAGTTTGCCCCCCAACATGTCGAGCATACTGTGCGAACCGACCGATCAACCGAACGAGGTCGAGCTGCTGTTCGATGTCGACGCTACGCCCGTGCTGCAGATCAAGGCATTCAAGTCGAGCAATCAAAAGACGGAAGTGTCCCACTACAAGGCGACGGTGGCCCGGCTGAAGTCACGCGTCAGCGTTATCGTGAACTATTTCGCACTGAAGGGAGAGATGAAGCTGGAAGGATATCCTGATATCAAGATCCATCTGAACAGCATTGGACCGCTGAAGACCGCTAACGCACAGGACGAGAAGAAGCAGATCGATCTCATTACGGAGCTGCTGATTGGTTCGATGCGTGATGTGGTGTACCCAGTTGACTTCTCCATCTACTCCACCTGTCCGCGAATAATGGGCGAAGAGTCGGAGGAAGTCACCTCGGACTATGGCTACGGTGGTTACAGTGATGGATATCGTGGCTATCAGGATGATGCGTACGGTACCGGACTGTCGGCATACCCAAGGAAACT]
[+] EMBL BM597014 [CCGGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGGGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGCGTCCGCCGGTGTGACTGCTGGGACGCGCGTCTCCGAACCGAAGGAGGTGCTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATCGGAGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCATGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGACCCGAGGCGCAAAAGAAGCGTCCGGTGATACCACCTTCCAACATTAATGGCACTGATCCGCAA ]
[+] EMBL BM630124 [ ccgGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGAGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGTGTCCGCCGGTGTGACTGCTGGGACACGCGTCTCCGAACCGAAGGAGGTACTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATGGGGGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCACGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGTCCCGAGGCGCAAAAGAAGCGTCCGG ]
[+] EMBL BM624502 [ ccgAGCGGTGGCATCGGAGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCATGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGACCCGAGGCGCAAAAGAAGCGTCCGGTGATACCACCTTCCAACATTAATGGCACTGATCCGCAAATCACGCAATGGGCAATCCATCTGTTCCGCTGGCTGTACTCCGACCTGGTGGTGGTGAACAAGCTGCTCCAGGATTGGGTGGCCACCGTCAACACGGCACTGCTGACGCACGTCGAGCAGCACGAAATGATTGTGGAGGTGGTGCGCGTCCTGCCGGAAAGTTTGCCCCCCAACATGTCGAGCATACTGTGCGAACCGACCGATCAACCGAACGAGGTCGAGCTGCTGTTCGATGTCGACGCTACGCCCGTGCTGCAGATCAAGGCATTCAAGTCGAGCAATCAAAAGACGGAAGTGTCCCACTACAAGGCGACGGTGGCCCGGCTGAAGTCACGCGTCAGCGTTATCGTGAACTATTTCGCACTGAAGGGAGAGATGAAGCTGGAAGGATATCCTGATATCAAGATCCATCTGAACAGCATTGGACCGCT ]
[+] EMBL BM631012 [ ccgCGCAAATCACGCAATGGGCAATCCATCTGTTCCGCTGGCTGTACTCCGACCTGGTGGTGGTGAACAAGCTGCTCCAGGATTGGGTGGCCACCGTCAACACGGCACTGCTGACGCACGTCGAGCAGCACGAAATGATTGTGGAGGTGGTGCGCGTCCTGCCGGAAAGTTTGCCCCCCAACATGTCGAGCATACTGTGCGAACCGACCGATCAACCGAACGAGGTCGAGCTGCTGTTCGATGTCGACGCTACGCCCGTGCTGCAGATCAAGGCATTCAAGTCGAGCAATCAAAAGACGGAAGTGTCCCACTACAAGGCGACGGTGGCCCGGCTGAAGTCACGCGTCAGCGTTATCGTGAACTATTTCGCACTGAAGGGAGAGATGAAGCTGGAAGGATATCCTGATATCAAGATCCATCTGAACAGCATTGGACCGCTGAAGACCGCTAACGCACAGGACGAGAAGAAGCAGATCGATCTCATTACGGAGCTGCTGATTGGTTCGATGCGTGATGTGGTGTACCCAGTTGACTTCTCCATCTACTCCACCTGTCCGCGAATAATGGGCGAAGAGTCGGAGGAAGTCACCTCGGACTATGGCTACGGTGGTTACAGTGATGGATATCGTGGCTATCAGGATGATGCGTACGGTACCGGACTGTCGGCATACCCAAGGAAACT]
consensusID : consensus_6342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[CCGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGAATACTCGGGAAAAACGAAACGAAACACTCCGACGAAACAAATGCTCCCGATGCTGAAAAGTCTTACCGCAACGATGAAGAAACGAGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGAGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGTGTCCGCCGGTGTGACTGCTGGGACACGCGTCTCCGAACCGAAGGAGGTACTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATGGGGGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCACGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGTCCCGAAGCGCAAAAGAAGCGTCCGGGGATACCACCTTCCCACATTAATGGCACTGATCCG]
[+] EMBL BM649069 [CCGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAGTTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGAATACTCGGGAAAAACGAAACGAAACACTCCGACGAAACAAATGCTCCCGATGCTGAAAAGTCTTACCGCAACGATGAAGAAACGAGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCGCGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACGTACTGAAGAAGAGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCACCGTACCGGCCGGTACTGCGACACCGCTCGTGTCCGCCGGTGTGACTGCTGGGACACGCGTCTCCGAACCGAAGGAGGTACTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATGGAGGCAGCGGTGGCATGGGGGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTGGAGGAGCGATGGGTGCCGCCAGCGGTCCCACGATCGCTCGCAAACGCATTTCCCGCATGAGTCCCGGTCCCGAAGCGCAAAAGAAGCGTCCGGGGATACCACCTTCCCACATTAATGGCACTGATCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6342#0 CCGGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAG 60
consensus_6342#1 -CCGCGACGTTGAACTGGCCGGTTGCGGCTACACGCGCGGCCGTAGTGTACCGCTTCGAG 59
* *********************************************************
consensus_6342#0 TTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGG------------ 108
consensus_6342#1 TTTTATTTTCTTTGGTTTTATTGATACCATTTTCCCTTCCCCCCGTGGAATACTCGGGAA 119
************************************************
consensus_6342#0 ------------------------------------------------------------
consensus_6342#1 AAACGAAACGAAACACTCCGACGAAACAAATGCTCCCGATGCTGAAAAGTCTTACCGCAA 179
consensus_6342#0 ---------------GAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCG 153
consensus_6342#1 CGATGAAGAAACGAGGAGCCGGTGACCTCACGATGGATACGTTCGTAATGCTACTGTTCG 239
*********************************************
consensus_6342#0 CGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACG 213
consensus_6342#1 CGCTGATTGTGGTAGTGATTTCGCTCGTGTTTGCGACCAAACTGATCTACGACAAGTACG 299
************************************************************
consensus_6342#0 TACTGAAGAAGGGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCA 273
consensus_6342#1 TACTGAAGAAGAGTGCTACGGCGACCGGTGGGACGGCTGACGGTGTCGGTACTGCTGCCA 359
*********** ************************************************
consensus_6342#0 CCGTACCGGCCGGTACTGCGACACCGCTCGCGTCCGCCGGTGTGACTGCTGGGACGCGCG 333
consensus_6342#1 CCGTACCGGCCGGTACTGCGACACCGCTCGTGTCCGCCGGTGTGACTGCTGGGACACGCG 419
****************************** ************************ ****
consensus_6342#0 TCTCCGAACCGAAGGAGGTGCTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATG 393
consensus_6342#1 TCTCCGAACCGAAGGAGGTACTCAGCAAGAAGGAGGCCATTCTGTCCCAAGTTCGTAATG 479
******************* ****************************************
consensus_6342#0 GAGGCAGCGGTGGCATCGGAGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTG 453
consensus_6342#1 GAGGCAGCGGTGGCATGGGGGGTGGCGGTGGTGGTGCCAGAGGTGGTGGCGGCTTCGGTG 539
**************** ** ****************************************
consensus_6342#0 GAGGAGCGATGGGTGCCGCCAGCGGTCCCATGATCGCTCGCAAACGCATTTCCCGCATGA 513
consensus_6342#1 GAGGAGCGATGGGTGCCGCCAGCGGTCCCACGATCGCTCGCAAACGCATTTCCCGCATGA 599
****************************** *****************************
consensus_6342#0 GTCCCGGACCCGAGGCGCAAAAGAAGCGTCCGGTGATACCACCTTCCAACATTAATGGCA 573
consensus_6342#1 GTCCCGGTCCCGAAGCGCAAAAGAAGCGTCCGGGGATACCACCTTCCCACATTAATGGCA 659
******* ***** ******************* ************* ************
consensus_6342#0 CTGATCCGCAAATCACGCAATGGGCAATCCATCTGTTCCGCTGGCTGTACTCCGACCTGG 633
consensus_6342#1 CTGATCCG---------------------------------------------------- 667
********
consensus_6342#0 TGGTGGTGAACAAGCTGCTCCAGGATTGGGTGGCCACCGTCAACACGGCACTGCTGACGC 693
consensus_6342#1 ------------------------------------------------------------
consensus_6342#0 ACGTCGAGCAGCACGAAATGATTGTGGAGGTGGTGCGCGTCCTGCCGGAAAGTTTGCCCC 753
consensus_6342#1 ------------------------------------------------------------
consensus_6342#0 CCAACATGTCGAGCATACTGTGCGAACCGACCGATCAACCGAACGAGGTCGAGCTGCTGT 813
consensus_6342#1 ------------------------------------------------------------
consensus_6342#0 TCGATGTCGACGCTACGCCCGTGCTGCAGATCAAGGCATTCAAGTCGAGCAATCAAAAGA 873
consensus_6342#1 ------------------------------------------------------------
consensus_6342#0 CGGAAGTGTCCCACTACAAGGCGACGGTGGCCCGGCTGAAGTCACGCGTCAGCGTTATCG 933
consensus_6342#1 ------------------------------------------------------------
consensus_6342#0 TGAACTATTTCGCACTGAAGGGAGAGATGAAGCTGGAAGGATATCCTGATATCAAGATCC 993
consensus_6342#1 ------------------------------------------------------------
consensus_6342#0 ATCTGAACAGCATTGGACCGCTGAAGACCGCTAACGCACAGGACGAGAAGAAGCAGATCG 1053
consensus_6342#1 ------------------------------------------------------------
consensus_6342#0 ATCTCATTACGGAGCTGCTGATTGGTTCGATGCGTGATGTGGTGTACCCAGTTGACTTCT 1113
consensus_6342#1 ------------------------------------------------------------
consensus_6342#0 CCATCTACTCCACCTGTCCGCGAATAATGGGCGAAGAGTCGGAGGAAGTCACCTCGGACT 1173
consensus_6342#1 ------------------------------------------------------------
consensus_6342#0 ATGGCTACGGTGGTTACAGTGATGGATATCGTGGCTATCAGGATGATGCGTACGGTACCG 1233
consensus_6342#1 ------------------------------------------------------------
consensus_6342#0 GACTGTCGGCATACCCAAGGAAACT 1258
consensus_6342#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||