cluster # 6344

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Anopheles gambiae
cluster # 6344 cluster # 6344 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6344#0 length = 983 sequences # 3

consensus_6344#1 length = 795 sequences # 1
consensus_6344#2 length = 341 sequences # 1

consensusID : consensus_6344#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 983
fasta sequence

                              [CCGCAGAGCAGCAAAACGCTAGCAAAATTTACGTAGAGAGTGGAAAAGGATTAAAACTTGTGAGTTTGGCCAGCTTGTTCGTGTCCAGTTTCGTGTCCCATCGAGAATACCTGCGCACGGTACGAATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCACAGCGCCCGCAAAAGAAAGCAATAGCAAAATGTCGTTCGCGGAAAGATTAACCACCCTGATGGCCCGCCCCGGCCAGGACAATGTGCCGCGGGACGATGTGCCGTGGCATCTGAAGTACGGTGGACGGGCGGCGGGAATCGTCGGTGGATTCTTTGCCATCCTGTTCGGGCTGTACAACTGCATCGGCATACTGCTCGGTGACGTTGGGTGCCTGGTCGGCGGCATCCTGCAGATACTGGCCGGGTTCGTGGTGCTGGCGATAGAGGCACCGTGTTGCTTTATCTTCATCGACTATGTGCAGCAGGCGGCAGAGAAGGCCGACCAGCGGCCGTACTGGAACCGGGCCGCGCTCTACTGCATTATCTCCATCCCGCCGGTGATCCTGTGCCTGGGCTTGGGCAGCCTGTTCGGCTGTGGGCTTATATTCGTTACCGGCATGCTGTACGGTATGATGGCACTCGGCAAAAAAGGATCGCGCGAGGATATGGCAGCGATGGCTTCCCCGAACGCGATGTCCCCGGTGCAGGGCGTCCCGTCAACGGACCAACACTCCACCCTGATGGAGGATCCCGATGTATGGCGTCCAACATAAATCGTTCACTAAATATCAAACCCTCCAAAACCAAAAAACAACCTACCATAAACCCATTAAGCTTCTTAACAATTTTCGCTGCTCCTTCATCATGCAAAAGCAAAAACAAGCATTTAAAAATACAAAAAACACACACACCAACACACAAACGTTTTGCTCACGGGATA]

[+] EMBL BM641522             [CCGCAGAGCAGCAAAACGCTAGCAAAATTTACGTAGAGAGTGGAAAAGGATTAAAACTTGTGAGTTTGGCCAGCTTGTTCGTGTCCAGTTTCGTGTCCCATCGAGAATACCTGCGCACGGTACGAATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCACAGCGCCCGCAAAAGAAAGCAATAGCAAAATGTCGTTCGCGGAAAGATTAACCACCCTGATGGCCCGCCCCGGCCAGGACAATGTGCCGCGGGACGATGTGCCGTGGCATCTGAAGTACGGTGGACGGGCGGCGGGAATCGTCGGTGGATTCTTTGCCATCCTGTTCGGGCTGTACAACTGCATCGGCATACTGCTCGGTGACGTTGGGTGCCTGGTCGGCGGCATCCTGCAGATACTGGCCGGGTTCGTGGTGCTGGCGATAGAGGCACCGTGTTGCTTTATCTTCATCGACTATGTGCAGCAGGCGGCAGAGAAGGCCGACCAGCGGCCGTACTGGAACCGGGCCGCGCTCTACTGCATTATCTCCATCCCGCCGGTGATTCTGTGCCTGGGCTTGGGCAGCCTGTTCGGCTGTGGGCTTATATT                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM638948             [                                                                   ccgCAGCTTGTTCGTGTCCAGTTTCGTGTCCCGTCGAGAATACCTGCGCACGGTACGAATCGTGAATCCGTGGCTCGAAAGCAATTGCCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCACAGCGCCCGCAAAAGAAAGCAATAGCAAAATGTCGTTCGCGGAAAGATTAACCACCCTGATGGCCCGCCCCGGCCAGGACAATGTGCCGCGGGACGATGTGCCGTGGCATCTGAAGTACGGTGGACGGGCGGCGGGTATCGTCGGTGGATTCTTTGCCATCCTGTTCGGGCTGTACAACTGCATCGGCATACTGCTTGGTGACGTTGGCTGCCTGGTCGGTGGCATCCTGCAGATACTGGCCGGGTTCGTGGTACTGGCGATAGAGGCACCGTGTTGCTTTATCTTCATCGATTATGTGCAGCAGGCGGCAGAGAAGGCCGACCAGCGGCCGTACTGGAACCGGGCCGCGCTCTACTGCATTATCTCCATCCCGCCGGTGATCCTGTGCCTGGGCTTGGGCAGCCTGTTCGGCTGTGGGCTTATATTCGTTACCGGCATGCTGTACGGTATGATGGCACTCGGCAAAAAAGGATCGCGCGAGGATATGGCAGCGATGGCTTCCC                                                                                                                                                                                                                                                                ]
[+] EMBL BM645322             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ccGGCGGCAGAGAAGGCCGACCAGCGGCCGTACTGGAACCGGGCCGCGCTCTACTGCATTATCTCCATCCCGCCGGTGATCCTGTGCCTGGGCTTGGGCAGCCTGTTCGGCTGTGGGCTTATATTCGTTACCGGCATGCTGTACGGTATGATGGCACTCGGCAAAAAAGGATCGCGCGAGGATATGGCAGCGATGGCTTCCCCGAACGCGATGTCCCCGGTGCAGGGCGTCCCGTCAACGGACCAACACTCCACCCTGATGGAGGATCCCGATGTATGGCGTCCAACATAAATCGTTCACTAAATATCAAACCCTCCAAAACCAAAAAACAACCTACCATAAACCCATTAAGCTTCTTAACAATTTTCGCTGCTCCTTCATCATGCAAAAGCAAAAACAAGCATTTAAAAATACAAAAAACACACACACCAACACACAAACGTTTTGCTCACGGGATA]




>consensus_6344#0
CCGCAGAGCAGCAAAACGCTAGCAAAATTTACGTAGAGAGTGGAAAAGGATTAAAACTTG
TGAGTTTGGCCAGCTTGTTCGTGTCCAGTTTCGTGTCCCATCGAGAATACCTGCGCACGG
TACGAATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAGGTT
ATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCACAGCGCCCGCAAAAGAA
AGCAATAGCAAAATGTCGTTCGCGGAAAGATTAACCACCCTGATGGCCCGCCCCGGCCAG
GACAATGTGCCGCGGGACGATGTGCCGTGGCATCTGAAGTACGGTGGACGGGCGGCGGGA
ATCGTCGGTGGATTCTTTGCCATCCTGTTCGGGCTGTACAACTGCATCGGCATACTGCTC
GGTGACGTTGGGTGCCTGGTCGGCGGCATCCTGCAGATACTGGCCGGGTTCGTGGTGCTG
GCGATAGAGGCACCGTGTTGCTTTATCTTCATCGACTATGTGCAGCAGGCGGCAGAGAAG
GCCGACCAGCGGCCGTACTGGAACCGGGCCGCGCTCTACTGCATTATCTCCATCCCGCCG
GTGATCCTGTGCCTGGGCTTGGGCAGCCTGTTCGGCTGTGGGCTTATATTCGTTACCGGC
ATGCTGTACGGTATGATGGCACTCGGCAAAAAAGGATCGCGCGAGGATATGGCAGCGATG
GCTTCCCCGAACGCGATGTCCCCGGTGCAGGGCGTCCCGTCAACGGACCAACACTCCACC
CTGATGGAGGATCCCGATGTATGGCGTCCAACATAAATCGTTCACTAAATATCAAACCCT
CCAAAACCAAAAAACAACCTACCATAAACCCATTAAGCTTCTTAACAATTTTCGCTGCTC
CTTCATCATGCAAAAGCAAAAACAAGCATTTAAAAATACAAAAAACACACACACCAACAC
ACAAACGTTTTGCTCACGGGATA

consensusID : consensus_6344#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 795
fasta sequence

                              [CCGCGGTTAACTTGTTCGTGTCTAGTTTCNCGTCCGTCGAGAATACCTGCGCACGGTACGAATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGACACCGGGAAAGTAAAGCGCAGCAGCGCCCGCAAAAGAAAGCAATAGCAAAATGTCGTTCGCTGGAAAGATTAACCACCCTGATGGCCGCCCGGCAGGACAATGTGCCGCGGGACTGATGTGCCGTGGCATCTGAAGTACGGTGGACTGGGCGGCGGGAATCGTCGGTGGATTCTTTGNCATCCTTGTTCGGGCTGTACAACTGCATCGGCATACTTGCTCGGTGATGTNNGGGTGACTGGTCGGGCGGCATCCTGCAGATACTGGCCGNGGTTCGTTGGTGCTGGCGATTNAGAGGCACCGTGTAGCTNTTATCTTCATCGAATATAGTAGCAGCAGGCGGCATGAGCAANGCCGACCAGGCTGGCCGTTACTGGGAACCGGGCGCGCTCTACTGCATTATCTCCATCCCGCGGTTGATNTCTGTGCCTGNGCTTGGAGCCAGCCTGTNCGGCTGTGGGCTTATATTCGTANCGGCAATGCTGTACGGTATGATGGGACTCGGAAAAAAAGGATCGCGCGAACGATATGGCAGCGATGGATTCCCCGAACGCGATGTCCCCGGGTGNAAGCGTCCGTCAAGGGACCAAGAATTCAACCCTGNATNGAGGACCCGANNAGTACGGCGGTACAGCATAAATCGTCACTAATATAAACCTCCA]

[+] EMBL AL692551             [CCGCGGTTAACTTGTTCGTGTCTAGTTTCNCGTCCGTCGAGAATACCTGCGCACGGTACGAATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGACACCGGGAAAGTAAAGCGCAGCAGCGCCCGCAAAAGAAAGCAATAGCAAAATGTCGTTCGCTGGAAAGATTAACCACCCTGATGGCCGCCCGGCAGGACAATGTGCCGCGGGACTGATGTGCCGTGGCATCTGAAGTACGGTGGACTGGGCGGCGGGAATCGTCGGTGGATTCTTTGNCATCCTTGTTCGGGCTGTACAACTGCATCGGCATACTTGCTCGGTGATGTNNGGGTGACTGGTCGGGCGGCATCCTGCAGATACTGGCCGNGGTTCGTTGGTGCTGGCGATTNAGAGGCACCGTGTAGCTNTTATCTTCATCGAATATAGTAGCAGCAGGCGGCATGAGCAANGCCGACCAGGCTGGCCGTTACTGGGAACCGGGCGCGCTCTACTGCATTATCTCCATCCCGCGGTTGATNTCTGTGCCTGNGCTTGGAGCCAGCCTGTNCGGCTGTGGGCTTATATTCGTANCGGCAATGCTGTACGGTATGATGGGACTCGGAAAAAAAGGATCGCGCGAACGATATGGCAGCGATGGATTCCCCGAACGCGATGTCCCCGGGTGNAAGCGTCCGTCAAGGGACCAAGAATTCAACCCTGNATNGAGGACCCGANNAGTACGGCGGTACAGCATAAATCGTCACTAATATAAACCTCCA]




>consensus_6344#1
CCGCGGTTAACTTGTTCGTGTCTAGTTTCNCGTCCGTCGAGAATACCTGCGCACGGTACG
AATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAGGTTATCT
ACTTTCACCCTCGGACACCGGGAAAGTAAAGCGCAGCAGCGCCCGCAAAAGAAAGCAATA
GCAAAATGTCGTTCGCTGGAAAGATTAACCACCCTGATGGCCGCCCGGCAGGACAATGTG
CCGCGGGACTGATGTGCCGTGGCATCTGAAGTACGGTGGACTGGGCGGCGGGAATCGTCG
GTGGATTCTTTGNCATCCTTGTTCGGGCTGTACAACTGCATCGGCATACTTGCTCGGTGA
TGTNNGGGTGACTGGTCGGGCGGCATCCTGCAGATACTGGCCGNGGTTCGTTGGTGCTGG
CGATTNAGAGGCACCGTGTAGCTNTTATCTTCATCGAATATAGTAGCAGCAGGCGGCATG
AGCAANGCCGACCAGGCTGGCCGTTACTGGGAACCGGGCGCGCTCTACTGCATTATCTCC
ATCCCGCGGTTGATNTCTGTGCCTGNGCTTGGAGCCAGCCTGTNCGGCTGTGGGCTTATA
TTCGTANCGGCAATGCTGTACGGTATGATGGGACTCGGAAAAAAAGGATCGCGCGAACGA
TATGGCAGCGATGGATTCCCCGAACGCGATGTCCCCGGGTGNAAGCGTCCGTCAAGGGAC
CAAGAATTCAACCCTGNATNGAGGACCCGANNAGTACGGCGGTACAGCATAAATCGTCAC
TAATATAAACCTCCA

consensusID : consensus_6344#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [GAGGTTTAAAGTGGAAAAGGATTTAAACTTGTGAGTTTGGGCAGCTTGTTCGGTGGTCAGTTTCGTGGTCCGGTCGAGAATACCTGCGCACGGGTACGAATCGTGAATCGTGGCTCGAAAGCAATTGCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCAAGGCCCGTAAAAGAAAGCAATAGCCCAATGTCGATTCGCAGAACAGATTGATCCACTGGGATGGGACTCGGCCCCGGCTCAAGTGAACAANTGGTGCGCGCCGGGGACGAATGTGCCGGTGGGACTTATGTANGTACGGGTGTGAT]

[+] EMBL AL933601             [GAGGTTTAAAGTGGAAAAGGATTTAAACTTGTGAGTTTGGGCAGCTTGTTCGGTGGTCAGTTTCGTGGTCCGGTCGAGAATACCTGCGCACGGGTACGAATCGTGAATCGTGGCTCGAAAGCAATTGCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCAAGGCCCGTAAAAGAAAGCAATAGCCCAATGTCGATTCGCAGAACAGATTGATCCACTGGGATGGGACTCGGCCCCGGCTCAAGTGAACAANTGGTGCGCGCCGGGGACGAATGTGCCGGTGGGACTTATGTANGTACGGGTGTGAT]




>consensus_6344#2
GAGGTTTAAAGTGGAAAAGGATTTAAACTTGTGAGTTTGGGCAGCTTGTTCGGTGGTCAG
TTTCGTGGTCCGGTCGAGAATACCTGCGCACGGGTACGAATCGTGAATCGTGGCTCGAAA
GCAATTGCAGCAACTAGCAAAAAGAAAAGGTTATCTACTTTCACCCTCGGCACACCGGGA
AAGTAAAGCGCAGCAAGGCCCGTAAAAGAAAGCAATAGCCCAATGTCGATTCGCAGAACA
GATTGATCCACTGGGATGGGACTCGGCCCCGGCTCAAGTGAACAANTGGTGCGCGCCGGG
GACGAATGTGCCGGTGGGACTTATGTANGTACGGGTGTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6344#0      CCGCAGAGCAGCAAAACGCTAGCAAAATTTACGTAGAGAGTGGAAAAGGATTAAAACTTG 60
consensus_6344#1      ------------------------------------------------------------
consensus_6344#2      -----------------------------GAGGTTTAAAGTGGAAAAGGATTTAAACTTG 31
                                                                                  

consensus_6344#0      TGAGTTTGGCCAGCTTGTTCG-TGTCCAGTTTCGTG-TCCCATCGAGAATACCTGCGCAC 118
consensus_6344#1      ---CCGCGGTTAACTTGTTCG-TGTCTAGTTTCNCG-TCC-GTCGAGAATACCTGCGCAC 54
consensus_6344#2      TGAGTTTGGGCAGCTTGTTCGGTGGTCAGTTTCGTGGTCCGGTCGAGAATACCTGCGCAC 91
                             **  * ******** **   ******  * ***  ******************

consensus_6344#0      GG-TACGAATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAG 177
consensus_6344#1      GG-TACGAATCGTGAATCCGTGGCTCGAAAGCTATTGCCAGCAACTAGCAAAAAGAAAAG 113
consensus_6344#2      GGGTACGAATCGTGAATC-GTGGCTCGAAAGCAATTGC-AGCAACTAGCAAAAAGAAAAG 149
                      ** *************** ************* ***** *********************

consensus_6344#0      GTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCACAGCGCCCGCAAAA 237
consensus_6344#1      GTTATCTACTTTCACCCTCGG-ACACCGGGAAAGTAAAGCGCAGCA--GCGCCCGCAAAA 170
consensus_6344#2      GTTATCTACTTTCACCCTCGGCACACCGGGAAAGTAAAGCGCAGCA--AGGCCCGTAAAA 207
                      ********************* ************************    ***** ****

consensus_6344#0      GAAAGCAATAGCAAAATGTCG-TTCGC-GGAAAGATTAA-CCACCCTGATGGCCCGCCCC 294
consensus_6344#1      GAAAGCAATAGCAAAATGTCG-TTCGCTGGAAAGATTAA-CCACCCTGATGGCC--GCCC 226
consensus_6344#2      GAAAGCAATAGCCCAATGTCGATTCGCAGAACAGATTGATCCACTGGGATGGG---ACTC 264
                      ************  ******* ***** * * ***** * ****   *****     * *

consensus_6344#0      GGCCAGGACAATGTGCCGCGGGAC-GATGTGCCGTGGCATCTGAAGTACGGTGGAC-GGG 352
consensus_6344#1      GGC-AGGACAATGTGCCGCGGGACTGATGTGCCGTGGCATCTGAAGTACGGTGGACTGGG 285
consensus_6344#2      GGCCCCGGC--TCAAGTGAACAANTGGTGCGCGCCGGGGACGAATGTGCCGGTG---GGA 319
                      ***   * *  *     *    *  * ** **   **   *  * ** * *  *   ** 

consensus_6344#0      CGGCGGGAATCGTCGGTGGATTCTTTGCCATCCT-GTTCGGGCTGTACAACTGCATCGGC 411
consensus_6344#1      CGGCGGGAATCGTCGGTGGATTCTTTGNCATCCTTGTTCGGGCTGTACAACTGCATCGGC 345
consensus_6344#2      CTTATGTANGTACGGGTGTGAT-------------------------------------- 341
                      *    * *      ****   *                                      

consensus_6344#0      ATACT-GCTCGGTGACGTTGGG-TGCCTGGTCGG-CGGCATCCTGCAGATACTGGCCGGG 468
consensus_6344#1      ATACTTGCTCGGTGATGTNNGGGTGACTGGTCGGGCGGCATCCTGCAGATACTGGCCGNG 405
consensus_6344#2      ------------------------------------------------------------
                                                                                  

consensus_6344#0      -TTCGT-GGTGCTGGCGAT--AGAGGCACCGTGTTGCTTT-ATCTTCATCGACTATGT-- 521
consensus_6344#1      GTTCGTTGGTGCTGGCGATTNAGAGGCACCGTGTAGCTNTTATCTTCATCGAATATAGTA 465
consensus_6344#2      ------------------------------------------------------------
                                                                                  

consensus_6344#0      GCAGCAGGCGGCA-GAG-AAGGCCGACCAG--CGGCCGT-ACTGGAACCGGGCCGCGCTC 576
consensus_6344#1      GCAGCAGGCGGCATGAGCAANGCCGACCAGGCTGGCCGTTACTGGGAACCGGGCGCGCTC 525
consensus_6344#2      ------------------------------------------------------------
                                                                                  

consensus_6344#0      TACTGCATTATCTCCATCCCGCCGGTGATC-CTGTGCCTGGGCTTGGG--CAGCCTGTTC 633
consensus_6344#1      TACTGCATTATCTCCATCCCGCGGTTGATNTCTGTGCCTGNGCTTGGAGCCAGCCTGTNC 585
consensus_6344#2      ------------------------------------------------------------
                                                                                  

consensus_6344#0      GGCTGTGGGCTTATATTCGTTACCGGCATGCTGTACGGTATGATGGCACTCGGCAAAAAA 693
consensus_6344#1      GGCTGTGGGCTTATATTCGTANCGGCAATGCTGTACGGTATGATGGGACTCGGAAAAAAA 645
consensus_6344#2      ------------------------------------------------------------
                                                                                  

consensus_6344#0      GGATCGCGCGAG-GATATGGCAGCGATGGCTTCCCCGAACGCGATGTCCCCGGTGCAGGG 752
consensus_6344#1      GGATCGCGCGAACGATATGGCAGCGATGGATTCCCCGAACGCGATGTCCCCGGGTGNAAG 705
consensus_6344#2      ------------------------------------------------------------
                                                                                  

consensus_6344#0      CGTCCCGTCAACGGACCAACACTCCACCCT--GATGGAGGATCCCGAT-GTATGGCG-TC 808
consensus_6344#1      CGTCC-GTCAAGGGACCAAGAATTCAACCCTGNATNGAGGACCCGANNAGTACGGCGGTA 764
consensus_6344#2      ------------------------------------------------------------
                                                                                  

consensus_6344#0      CAACATAAATCGTTCACTAAATATCAAACCCTCCAAAACCAAAAAACAACCTACCATAAA 868
consensus_6344#1      CAGCATAAATCGT-CACTAA-TAT--AAACCTCCA------------------------- 795
consensus_6344#2      ------------------------------------------------------------
                                                                                  

consensus_6344#0      CCCATTAAGCTTCTTAACAATTTTCGCTGCTCCTTCATCATGCAAAAGCAAAAACAAGCA 928
consensus_6344#1      ------------------------------------------------------------
consensus_6344#2      ------------------------------------------------------------
                                                                                  

consensus_6344#0      TTTAAAAATACAAAAAACACACACACCAACACACAAACGTTTTGCTCACGGGATA 983
consensus_6344#1      -------------------------------------------------------
consensus_6344#2      -------------------------------------------------------