cluster # 6345

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Anopheles gambiae
cluster # 6345 cluster # 6345 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6345#0 length = 694 sequences # 2

consensus_6345#1 length = 692 sequences # 2
consensus_6345#2 length = 549 sequences # 1

consensusID : consensus_6345#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 694
fasta sequence

                              [CCGGCATCTCGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGGTCCTTAGTCGTGTGCTGACTCCGTCGTTGCAATTTCAACAGAAGAAAATAAAACTAGCTGCACGGTAGGACTGTAAAACTGTGAGTGTAGTGTTTTGATGGTGAGAAGTGGGTACGTTTGGGAGAGATTTGCTACGAACGTTGGCAAACGCAATTCAACAACACTAGTACAACAGTTTATCTGTGTGTTGTAATACTATAACTGCATGTAAAACTATTTTAAGTGGCTTTTCATGCAGCCCTTCCAGCAGCATCTCCGCTTCTCACAGCGAGAATCTGTTACTGCAAACTGAAAAGACGATAGAAGATATTTAGCGTTGAGTTGTCCTGTGTTGTTTAATCTGTTTTATCTTCCTGGTGCGAGCAGTTTGTTGCATCATACAGTAGACGCCGTGTCATTGCAAAGAAAGATTGATTAATTATGTGAAAGTTGTCCGCCCGTAGCAACGTGACATTCGCGCCAACGTTCCAATCCAGTCTGACGATCTCCGACCTCGTCTTCCGTTGCAATTCAGCTGATAGGTTGCAGTGGCTCAGTTGCATCATATGATAAGTTGCTGTTTGAACGTGTTGTGGTGATTGAAGTGTATCTGAGCGCTTGGGTGAGCGTGTGTGCTATCAATAAAAAGAGAGAGAGAT]

[+] EMBL BM585985             [CCGGCATCTCGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGGTCCTTAGTCGTGTGCTGACTCCGTCGTTGCAATTTCAACAGAAGAAAATAAAACTAGCTGCACGGTAGGACTGTAAAACTGTGAGTGTAGTGTTTTGATGGTGAGAAGTGGGTACGTTTGGGAGAGATTTGCTACGAACGTTGGCAAACGCAATTCAACAACACTAGTACAACAGTTTATCTGTGTGTTGTAATACTATAACTGCATGTAAAACTATTTTAAGTGGCTTTTCATGCAGCCCTTCCAGCAGCATCTCCGCTTCTCACAGCGAGAATCTGTTACTGCAAACTGAAAAGACGATAGAAGATATTTAGCGTTGAGTTGTCCTGTGTTGTTTAATCTGTTTTATCTTCCTGGTGCGAGCAGTTTGTTGCATCATACAGTAGACGCCGTGTCATTGCAAAGAAAGATTGATTAATTATGTGAAAGTTGTCCGCCCGTAGCAACGTGACATTCGCGCCAACGTTCCAATCCAGTCTGACGATCTCCGACCTCGTCTTCCGTTGCAATTCAGCTGATAGGTTGCAGTGGCTCAGTTGCATCATATGATAAGTTGCTGTTTGAACGTGTTGTGGTGATTGAAGTGTATCTGAGCGCTTGGGTGAGCGTGTGTGCTATCA                  ]
[+] EMBL BM628166             [                                                                                                                             ccgGTAAAACTGTGAGTGTAGTGTTTTGATGGTGAGAAGTGGGTACGTTTGGGAGAGATTTGCTACGAACGTTGGCAAACGCAATTCAACAACACTAGTACAACAGTTTATCTGTGTGTTGTAATACTATAACTGCATGTAAAACTATTTTAAGTGGCTTTTCATGCAGCCCTTCCAGCAGCATCTCCGCTTCTCACAGCGAGAATCTGTTACTGCAAACTGAAAAGACGATAGAAGATATTTAGCGTTGAGTTGTCCTGTGTTGTTTAATCTGTTTTATCTTCCTGGTGCGAGCAGTTTGTTGCATCATACAGTAGACGCCGTGTCATTGCAAAGAAAGATTGATTAATTATGTGAAAGTTGTCCGCCCGTAGCAACGTGACATTCGCGCCAACGTTCCAATCCAGTCTGACGATCTCCGACCTCGTCTTCCGTTGCAATTCAGCTGATAGGTTGCAGTGGCTCAGTTGCATCATATGATAAGTTGCTGTTTGAACGTGTTGTGGTGATTGAAGTGTATCTGAGCGCTTGGGTGAGCGTGTGTGCTATCCATAAAAAGAGAGAGAGAT]




>consensus_6345#0
CCGGCATCTCGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGGTCCT
TAGTCGTGTGCTGACTCCGTCGTTGCAATTTCAACAGAAGAAAATAAAACTAGCTGCACG
GTAGGACTGTAAAACTGTGAGTGTAGTGTTTTGATGGTGAGAAGTGGGTACGTTTGGGAG
AGATTTGCTACGAACGTTGGCAAACGCAATTCAACAACACTAGTACAACAGTTTATCTGT
GTGTTGTAATACTATAACTGCATGTAAAACTATTTTAAGTGGCTTTTCATGCAGCCCTTC
CAGCAGCATCTCCGCTTCTCACAGCGAGAATCTGTTACTGCAAACTGAAAAGACGATAGA
AGATATTTAGCGTTGAGTTGTCCTGTGTTGTTTAATCTGTTTTATCTTCCTGGTGCGAGC
AGTTTGTTGCATCATACAGTAGACGCCGTGTCATTGCAAAGAAAGATTGATTAATTATGT
GAAAGTTGTCCGCCCGTAGCAACGTGACATTCGCGCCAACGTTCCAATCCAGTCTGACGA
TCTCCGACCTCGTCTTCCGTTGCAATTCAGCTGATAGGTTGCAGTGGCTCAGTTGCATCA
TATGATAAGTTGCTGTTTGAACGTGTTGTGGTGATTGAAGTGTATCTGAGCGCTTGGGTG
AGCGTGTGTGCTATCAATAAAAAGAGAGAGAGAT

consensusID : consensus_6345#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 692
fasta sequence

                              [CCGGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGATCCTTAGTCGTGTGCTGACTCCGTTGTTGCAATTTCAACAGAAGAATATAAAACTAGCTGCACGGTAGGACTGTAAAACTGTGAGTGTAGTGTTTTGATGCATCGTGGCATTCTGGAAAGATTGTAGCAGAGTGTAAGAATTGATTAGCCCACACGAAACATTTCGACATCCCGTGCTGCGGCAAATGATTGGTGCATGAGTGCATATGTGTTGTGGTACTGACCGAGCCGTAAGCAAAATATAGCAGAGGGGTCGCTAAGGTGATCCTCGATTTGGGCCGATAAGTTGGGCTGTTTGCTAAGTGTACCGGCACCAGCCCGCCAATAGAGGTGTTTGCGAACCGTCCTGCAGCACACTCCGGGTCCCTGTTACCGGAGGGGGACAGTCTTGGCAGTGTGAAAGATTAATCGAAACCGGCCAGCACGATGAAGCTCCGTGTGGCAATCACGTTCGGGCTGATCAGTGCCATCCTGGTGAACTACGTCCAATCGGCCATCCCCGTGCAACCGACGTCGACGACGACGACGACAACCACTGCGAAGAGCGTACTGGCGACTACGTCCGCGGTGCCATCGCTTAGGGTTTTTGGCAAACCATCGTCATCGAGTGAAGAGAGCTCCTGTCCCGGTGACAAATTCCGCT]

[+] EMBL BM598871             [CCGGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGATCCTTAGTCGTGTGCTGACTCCGTTGTTGCAATTTCAACAGAAGAATATAAAACTAGCTGCACGGTAGGACTGTAAAACTGTGAGTGTAGTGTTTTGATGCATCGTGGCATTCTGGAAAGATTGTAGCAGAGTGTAAGAATTGATTAGCCCACACGAAACATTTCGACATCCCGTGCTGCGGCAAATGATTGGTGCATGAGTGCATATGTGTTGTGGTACTGACCGAGCCGTAAGCAAAATATAGCAGAGGGGTCGCTAAGGTGATCCTCGATTTGGGCCGATAAGTTGGGCTGTTTGCTAAGTGTACCGGCACCAGCCCGCCAATAGAGGTGTTTGCGAACCGTCCTGCAGCACACTCCGGGTCCCTGTTACCGGAGGGGGACAGTCTTGGCAGTGTGAAAGATTAATCGAAACCGGCCAGCACGATGAAGCTCCGTGTGGCAATCACGTTCGGGCTGATCAGTGCCATCCTGGTGAACTACGTCCAATCGGCCATCCCCGTGCAACCGACGTCGACGACGACGACGACAACCACTGCGAAGAGCGTACTGGCGACTACGTCCGCGGTGCCATCGCTTAGGGTTTTTGGCAAACCATCGTCATCGAGTGAAGAGAGCTCCTGTCCCGGTGACAAATTCCGCT]
[+] EMBL BM598873             [                                                                                                ATAAAACTAGCTGCACGGTAGGACTGTAAAACTGTGAGTGTAGTGTTTTGATGCATCGTGGCATTCTGGAAAGATTGTAGCAGAGTGTAAGAATTGATTAGCCCACACGAAACATTTCGACATCCCGTGCTGCGGCAAATGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]




>consensus_6345#1
CCGGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGATCCTTAGTCGT
GTGCTGACTCCGTTGTTGCAATTTCAACAGAAGAATATAAAACTAGCTGCACGGTAGGAC
TGTAAAACTGTGAGTGTAGTGTTTTGATGCATCGTGGCATTCTGGAAAGATTGTAGCAGA
GTGTAAGAATTGATTAGCCCACACGAAACATTTCGACATCCCGTGCTGCGGCAAATGATT
GGTGCATGAGTGCATATGTGTTGTGGTACTGACCGAGCCGTAAGCAAAATATAGCAGAGG
GGTCGCTAAGGTGATCCTCGATTTGGGCCGATAAGTTGGGCTGTTTGCTAAGTGTACCGG
CACCAGCCCGCCAATAGAGGTGTTTGCGAACCGTCCTGCAGCACACTCCGGGTCCCTGTT
ACCGGAGGGGGACAGTCTTGGCAGTGTGAAAGATTAATCGAAACCGGCCAGCACGATGAA
GCTCCGTGTGGCAATCACGTTCGGGCTGATCAGTGCCATCCTGGTGAACTACGTCCAATC
GGCCATCCCCGTGCAACCGACGTCGACGACGACGACGACAACCACTGCGAAGAGCGTACT
GGCGACTACGTCCGCGGTGCCATCGCTTAGGGTTTTTGGCAAACCATCGTCATCGAGTGA
AGAGAGCTCCTGTCCCGGTGACAAATTCCGCT

consensusID : consensus_6345#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGACTTTGACCATAAGACGGAAAGGTGCTAAAAGTATAAATGATTTTATAGTATTTTCTTCACATCATCCTAGCATCGTGGCGTTCTGGTAAGATTATAGCAGAGTGTAAGAATTGATTAGCCCATACAAAACATTTCGACATCCCGTGCCGTGGCAAGAGATTGGTGCATGAGTGCATATGTGTTGTGGTACTGACCGAGCCGTAAGCAAAATAAAGCAGAGGGGTCGCTAAGGTGATCCTCGATTTGGGCCGATAAGTTAGGCTGTTTGCAAAGTGTACCGGCACCAGCCCACCAATAGAGGTGTTTGCGAACCGTTCTGCAGCACACTCCGGGTCCCTGTTACCGGAGGGGGACAGTCTTGGCAGTGTGAAAGATTAATCGTAACCGGCCAGCACGATGAAGCTCCGTGTGGCAATCACGTTCGGGCTGATCAGTGCCATCCTGGTGAACTACGTCCAATCGGCCATCCCCGTGCAACCGACGACGACGACGACGACGACAACCACTGCGAAGAGCGTACT]

[+] EMBL BM606261             [CCGCCCACGCGTCCGCCCACGCGTCCGACTTTGACCATAAGACGGAAAGGTGCTAAAAGTATAAATGATTTTATAGTATTTTCTTCACATCATCCTAGCATCGTGGCGTTCTGGTAAGATTATAGCAGAGTGTAAGAATTGATTAGCCCATACAAAACATTTCGACATCCCGTGCCGTGGCAAGAGATTGGTGCATGAGTGCATATGTGTTGTGGTACTGACCGAGCCGTAAGCAAAATAAAGCAGAGGGGTCGCTAAGGTGATCCTCGATTTGGGCCGATAAGTTAGGCTGTTTGCAAAGTGTACCGGCACCAGCCCACCAATAGAGGTGTTTGCGAACCGTTCTGCAGCACACTCCGGGTCCCTGTTACCGGAGGGGGACAGTCTTGGCAGTGTGAAAGATTAATCGTAACCGGCCAGCACGATGAAGCTCCGTGTGGCAATCACGTTCGGGCTGATCAGTGCCATCCTGGTGAACTACGTCCAATCGGCCATCCCCGTGCAACCGACGACGACGACGACGACGACAACCACTGCGAAGAGCGTACT]




>consensus_6345#2
CCGCCCACGCGTCCGCCCACGCGTCCGACTTTGACCATAAGACGGAAAGGTGCTAAAAGT
ATAAATGATTTTATAGTATTTTCTTCACATCATCCTAGCATCGTGGCGTTCTGGTAAGAT
TATAGCAGAGTGTAAGAATTGATTAGCCCATACAAAACATTTCGACATCCCGTGCCGTGG
CAAGAGATTGGTGCATGAGTGCATATGTGTTGTGGTACTGACCGAGCCGTAAGCAAAATA
AAGCAGAGGGGTCGCTAAGGTGATCCTCGATTTGGGCCGATAAGTTAGGCTGTTTGCAAA
GTGTACCGGCACCAGCCCACCAATAGAGGTGTTTGCGAACCGTTCTGCAGCACACTCCGG
GTCCCTGTTACCGGAGGGGGACAGTCTTGGCAGTGTGAAAGATTAATCGTAACCGGCCAG
CACGATGAAGCTCCGTGTGGCAATCACGTTCGGGCTGATCAGTGCCATCCTGGTGAACTA
CGTCCAATCGGCCATCCCCGTGCAACCGACGACGACGACGACGACGACAACCACTGCGAA
GAGCGTACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6345#1      -------CCGGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGATCCT 53
consensus_6345#2      -----------------------------------------------------------C 1
consensus_6345#0      CCGGCATCTCGTGGCGTAATGACTGCGAGTCTGAACGGTCGCTTCATACTGCGAGGTCCT 60
                                                                                  

consensus_6345#1      TAGTCGTGTGCTGACTCCGTTGTTGCAATTTCAACAGAAGAATATAAA--ACTAGCTGCA 111
consensus_6345#2      CGCCCACGCGTCCGCCCACGCGTCCGACTTTGACCATAAGACGGAAAGGTGCTAAAAGTA 61
consensus_6345#0      TAGTCGTGTGCTGACTCCGTCGTTGCAATTTCAACAGAAGAAAATAAA--ACTAGCTGCA 118
                          *  * *    * *    **   * *** * ** ****    **    ***   * *

consensus_6345#1      CGG-TAGGACTGTAAAACTGTGAGTGTAGTGTTTTGAT---GCATCGTGG---CATTCTG 164
consensus_6345#2      TAAATGATTTTATAGTATTTTCTTCACATCATCCTA-----GCATCGTGG---CGTTCTG 113
consensus_6345#0      CGG-TAGGACTGTAAAACTGTGAGTGTAGTGTTTTGATGGTGAGAAGTGGGTACGTTTGG 177
                          *     * **  * * *      *   *  *      *    ****   * **  *

consensus_6345#1      GAAAGATT-GTAGCAGAGTGTAAGAATTG--ATTAGCCCACACGAAACATTTCGACATCC 221
consensus_6345#2      GTAAGATT-ATAGCAGAGTGTAAGAATTG--ATTAGCCCATACAAAACATTTCGACATCC 170
consensus_6345#0      GAGAGATTTGCTACGAACGTTGGCAAACGCAATTCAACAACACTAGTACAACAGTTTATC 237
                      *  *****     *  *   *   **  *  ***   * * ** *        *     *

consensus_6345#1      CGTGCTGCGGCAAATGATTGGTGCATGAGTGCATATGTGTTGTGG-TACTGACCGAGCCG 280
consensus_6345#2      CGTGCCGTGGCAAGAGATTGGTGCATGAGTGCATATGTGTTGTGG-TACTGACCGAGCCG 229
consensus_6345#0      TGTGTGTTGTAATACTATAACTGCATGTAAAACTATTTTAAGTGGCTTTTCATGCAGCCC 297
                       ***    *  *    **   ******      *** *   **** *  * *   **** 

consensus_6345#1      TA--AGCAAAATAT--AGCAGAGGGGTCGCTAAGGTGATCCT-CGATTTGGGCCGATAAG 335
consensus_6345#2      TA--AGCAAAATAA--AGCAGAGGGGTCGCTAAGGTGATCCT-CGATTTGGGCCGATAAG 284
consensus_6345#0      TTCCAGCAGCATCTCCGCTTCTCACAGCGAGAATCTGTTACTGCAAACTGAAAAGACGAT 357
                      *   ****  **               **  **  ** * ** * *  **    **  * 

consensus_6345#1      TTGGGCTGTTT---GCTAAGTGTACCGGCACCAGCCCGCCAATAGAGGTGTT----TGCG 388
consensus_6345#2      TTAGGCTGTTT---GCAAAGTGTACCGGCACCAGCCCACCAATAGAGGTGTT----TGCG 337
consensus_6345#0      AGAAGATATTTAGCGTTGAGTTGTCCTGTGTTGTTTAATCTGTTTTATCTTCCTGGTGCG 417
                          * * ***   *   ***   ** *           *  *       *     ****

consensus_6345#1      AACCGTCC--TGCAGCACACTCCGGGTCCC-TGTTACCGGAGGGGGACAGTC-TTGGCAG 444
consensus_6345#2      AACCGTTC--TGCAGCACACTCCGGGTCCC-TGTTACCGGAGGGGGACAGTC-TTGGCAG 393
consensus_6345#0      AGCAGTTTGTTGCATCATACAGTAGACGCCGTGTCATTGCAAAGAAAGATTGATTAATTA 477
                      * * **    **** ** **    *   ** *** *  * *  *  * * *  **     

consensus_6345#1      TGTGAAAGATTAATCGAAACCGGCCAGCACGATGAAGCTCCGTGTGGCAATCACGTTCGG 504
consensus_6345#2      TGTGAAAGATTAATCGTAACCGGCCAGCACGATGAAGCTCCGTGTGGCAATCACGTTCGG 453
consensus_6345#0      TGTGAAAG-TTGTCCGC--CCG--TAGCAACGTGACATTCGCGCCAACGTTCCAATCCAG 532
                      ******** **   **   ***   ****   ***   **       *  **   * * *

consensus_6345#1      GCTGATCAGTGCCATCCTGGTGAACTACGTCCAATCGGCCATCCCCGTGCAACCGACGTC 564
consensus_6345#2      GCTGATCAGTGCCATCCTGGTGAACTACGTCCAATCGGCCATCCCCGTGCAACCGACGAC 513
consensus_6345#0      TCTGACGATCTCCGACCTCGTCTTCCGTTGCAATTCAGCTGATAGGTTGCAGTGG--CTC 590
                       ****  *   **  *** **   *     * * ** **        ****   *    *

consensus_6345#1      GACGACGACG-ACGACAA-CCACTGCGAAGAGCGTACTGGCGACTACGTCCGCGGTGCCA 622
consensus_6345#2      GACGACGACG-ACGACAA-CCACTGCGAAGAGCGTACT---------------------- 549
consensus_6345#0      AGTTGCATCATATGATAAGTTGCTGTTT-GAACGTGTTGTGGTGATTGAAGTGTATCTGA 649
                           *  *  * ** **    ***    ** ***  *                      

consensus_6345#1      TCGCTTAGGGTTTTTGGCAAACCATCGTCATCGAGTGAAGAGAGCTCCTGTCCCGGTGAC 682
consensus_6345#2      ------------------------------------------------------------
consensus_6345#0      GCGCTTGGGTGAGCGTGTGTGCTATCAATAAAAAGAGAGAGAGAT--------------- 694
                                                                                  

consensus_6345#1      AAATTCCGCT 692
consensus_6345#2      ----------
consensus_6345#0      ----------