cluster # 6348

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Anopheles gambiae
cluster # 6348 cluster # 6348 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6348#0 length = 761 sequences # 2

consensus_6348#1 length = 663 sequences # 2
consensus_6348#2 length = 629 sequences # 1

consensusID : consensus_6348#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 761
fasta sequence

                              [CCGGAAAAACATTGTCCTTCCAGCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAGTGTCTGTGGCTGTTGCATTTCCTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCACATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGCGATTTGATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGGAGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATTGACGGTGCTGGTGGCGGCGGCGGCGGTGTGCTGATCGATCTGGCGGACAAGAACAATCTGGACGGCGGTTCCGGGGGTGCTTCCGGTGGCAGTGGATCGGGAAACCGAGGCGGTGGTGGTGGTGGCAGTGGTGGCAGTGGAGGTGGTGCAGTGACCTCGCCACCGAACGTAGGCTTTGTCGCGTATCCGCCAGCCATTCCACAGCTACCCGTCGTACCGCCGACCGTTCCGTTTCAGTATCCGGCTGGCCCGAGCGGTCAACATTTCGGTGCGGCTTCCGCACCACCACCGTTCAATTACAACATACCGCCCAACTCGTCGGAGAAGGAAGAGATTAAGGATTTGA]

[+] EMBL BM634169             [CCGGAAAAACATTGTCCTTCCAGCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAGTGTCTGTGGCTGTTGCATTTCCTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCACATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGCGATTTGATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGGAGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATTGACGGTGCTGGTGGCGGCGGCGGCGGTGTGCTGATCGATCTGGCGGACAAGAACAATCTGGACGGCGGTTCCGGGGGTGCTTCCGGTGGCAGTGGATCGGGAAACCGAGGCGGTGGTGGTGGTGGCAGTGGTGGCAGTGGAGGTGGTGCAGTGACCTCGCCACCGAACGTAGGCTTTGTCGCGTATCCGCCAGCCATTCCACAGCTACCCGTCGTACCGCCGACCGTTCCGTTTCAGTATCCGGCTGGCCCGA                                                                                             ]
[+] EMBL BX618667             [                                                                                                                                                                                                                                                                                                                                                                        GCCGGACCCGCTCGTGATGAAGGACGACCATGCGAGCATTATGGAGGGGGAGATTGACGGTGCTGGTGGCGGCGGCGGCGGGGTGCTGATCGATCTGGCGGACAAGAACAATCTGGACGGCGGTTCCGGTGGCGCTTCCGGTGGCAGTGGATCGGGAAACCGAGGTGGTGGTGGTGGTGGCAGTGGTGGCAGCGGAGGTGGTGCCGTGACCTCGCCACCGAACGTAGGCTTTGTCGCGTATCCGCCAGCCATTCCACAGCTACCCGTCGTACCGCCGACCGTTCCGTTTCAGTATCCGGCTGGCCCGAGCGGTCAACATTTCGGTGCGGCTTCCGCACCACCACCGTTCAATTACAACATACCGCCCAACTCGTCGGAGAAGGAAGAGATTAAGGATTTGA]




>consensus_6348#0
CCGGAAAAACATTGTCCTTCCAGCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAG
TGTCTGTGGCTGTTGCATTTCCTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCT
GAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGA
ACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACG
GGCCCGCATCCGGGTCGAGCACATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGAT
CGTGGAAATGTACTGCGATTTGATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGGA
GCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATTGACGG
TGCTGGTGGCGGCGGCGGCGGTGTGCTGATCGATCTGGCGGACAAGAACAATCTGGACGG
CGGTTCCGGGGGTGCTTCCGGTGGCAGTGGATCGGGAAACCGAGGCGGTGGTGGTGGTGG
CAGTGGTGGCAGTGGAGGTGGTGCAGTGACCTCGCCACCGAACGTAGGCTTTGTCGCGTA
TCCGCCAGCCATTCCACAGCTACCCGTCGTACCGCCGACCGTTCCGTTTCAGTATCCGGC
TGGCCCGAGCGGTCAACATTTCGGTGCGGCTTCCGCACCACCACCGTTCAATTACAACAT
ACCGCCCAACTCGTCGGAGAAGGAAGAGATTAAGGATTTGA

consensusID : consensus_6348#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 663
fasta sequence

                              [CCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAGTGTCTGTGGCTGTTGCATTTCCTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCACATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGCGATTTGATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGGAGCTGGACGAGGGCATCGAGGAGGCGGTGAGCAGCATCATCTGGGTGGCGCCGCGCCTGCAGGCGGACGTGCAGGAGCTGAAGCTGTGCTCGGACATATTCACGCTGAAGTACGGCAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCGCCCCACAAGGTGTCGGACAAGCTGATGCACAAGCTGGCGATACAGGCCCCGCCGAAGCTGCTGGTGGAGAAGTATCTGATCGAGATAGCGAAGATCTTTAACGTCGAGTACGAGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATTGACGGT]

[+] EMBL BM581054             [CCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAGTGTCTGTGGCTGTTGCATTTCCTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCACATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGCGATTTGATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGGAGCTGGACGAGGGCATCGAGGAGGCGGTGAGCAGCATCATCTGGGTGGCGCCGCGCCTGCAGGCGGACGTGCAGGAGCTGAAGCTGTGCTCGGACATATTCACGCTGAAGTACGGCAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCGCCCCACAAGGTGTCGGACAAGCTGATGCACAAGCTGGCGATACAGGCCCCGCCGAAGCTGCTGGTGGAGAAGTATCTGATCGAGATAGCGAAGATCTTTAACGTCGAGTACGAGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATTGACGGT]
[+] EMBL BX625092             [     GCCCTCATTTACCTCAAAAGTTACTAATTAAAGTGTCTGTGGCTGTGGCATTTCTTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCATATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGTGATTTGATACTGGCCCGCTTCGGGCTGGTCACGCAGATGAAGGAGCTGGACGAGGGCATCGAGGAGGCGGTGAGCAGCATCATCTGGGTGGCGCCGCGCCTGCANGCGGACGTGCAGGAGCTGAAGCTGTGCTCGGACATATTCACGCTGAAGTACGGCAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCACCCCACAAGGTGTCNGACAAGCTGATGCACAAGCTGGCGATACAGGCCCCGCCGAAGCTGCTGGTGGAGAAGTATCTGATCGAGATAGCGAAGATCTTTAACGTCGACTACGAGCCNGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTA                    ]




>consensus_6348#1
CCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAGTGTCTGTGGCTGTTGCATTTCC
TCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCG
CTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAG
GAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCAC
ATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGCGATTTG
ATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGGAGCTGGACGAGGGCATCGAGGAG
GCGGTGAGCAGCATCATCTGGGTGGCGCCGCGCCTGCAGGCGGACGTGCAGGAGCTGAAG
CTGTGCTCGGACATATTCACGCTGAAGTACGGCAAACCGTACGCGGAGCAGGTGCGCGCC
GCCATCCCGCCCCACAAGGTGTCGGACAAGCTGATGCACAAGCTGGCGATACAGGCCCCG
CCGAAGCTGCTGGTGGAGAAGTATCTGATCGAGATAGCGAAGATCTTTAACGTCGAGTAC
GAGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATTGAC
GGT

consensusID : consensus_6348#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTTTCTTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCATATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGTGATTTGATACTGGCCCGCTTCGGGCTGGTCACGCAGATGAAGGAGCTGGACGAGGGCATCGAGGAGGCGGTGAGCAGCATCATCTGGGTGGCGCCGCGCCTGCAGGCGGACGTGCAGGAGCTGAAGCTGTGCTCGGACATATTCACGCTGAAGTACGGCAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCACCCCACAAGGTGTCGGACAAGCTGATGCACAAGCTGGCGATACAGGCCCCGCCGAAGCTGCTGGTGGAGAAGTATCTGATCGAGATAGCGAAGATCTTTAACGTCGACTACGAGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATT]

[+] EMBL BM617766             [CCGCGGACGCGTGGGCGGACGCGTGGGTTTCTTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAACGGGCCCGCATCCGGGTCGAGCATATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGATCGTGGAAATGTACTGTGATTTGATACTGGCCCGCTTCGGGCTGGTCACGCAGATGAAGGAGCTGGACGAGGGCATCGAGGAGGCGGTGAGCAGCATCATCTGGGTGGCGCCGCGCCTGCAGGCGGACGTGCAGGAGCTGAAGCTGTGCTCGGACATATTCACGCTGAAGTACGGCAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCACCCCACAAGGTGTCGGACAAGCTGATGCACAAGCTGGCGATACAGGCCCCGCCGAAGCTGCTGGTGGAGAAGTATCTGATCGAGATAGCGAAGATCTTTAACGTCGACTACGAGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATT]




>consensus_6348#2
CCGCGGACGCGTGGGCGGACGCGTGGGTTTCTTCGACCATGTTCTCCAGCGCGCCCAACT
ACACGAAGCTGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGA
AAAAAACGGAACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCA
AGCCCGAACGGGCCCGCATCCGGGTCGAGCATATCATCCGCGAGGACTACCTGGTGGAGG
CGATGGAGATCGTGGAAATGTACTGTGATTTGATACTGGCCCGCTTCGGGCTGGTCACGC
AGATGAAGGAGCTGGACGAGGGCATCGAGGAGGCGGTGAGCAGCATCATCTGGGTGGCGC
CGCGCCTGCAGGCGGACGTGCAGGAGCTGAAGCTGTGCTCGGACATATTCACGCTGAAGT
ACGGCAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCACCCCACAAGGTGTCGGACA
AGCTGATGCACAAGCTGGCGATACAGGCCCCGCCGAAGCTGCTGGTGGAGAAGTATCTGA
TCGAGATAGCGAAGATCTTTAACGTCGACTACGAGCCGGACCCGCTCGTGATGAAGGACG
ACCATTCGAGCATTATGGATGGGGAGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6348#1      ----------------------CCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAG 38
consensus_6348#2      ---------------------------------------------------CCGCGGACG 9
consensus_6348#0      CCGGAAAAACATTGTCCTTCCAGCGCAGCCCTCATTCACCTCAAAAGTTACTAATTAAAG 60
                                                                               * *

consensus_6348#1      TGTCTGTGGCTGT-TGCATTTCCTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGC 97
consensus_6348#2      CGTGGGCGGACGCGTGGGTTTCTTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGC 69
consensus_6348#0      TGTCTGTGGCTGT-TGCATTTCCTCGACCATGTTCTCCAGCGCGCCCAACTACACGAAGC 119
                       **  * **  *  **  **** *************************************

consensus_6348#1      TGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGG 157
consensus_6348#2      TGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGG 129
consensus_6348#0      TGAAGACGAACCTGCGGCTGGCGCTGAATCGGCTCAAGCTGCTGGAGAAGAAAAAAACGG 179
                      ************************************************************

consensus_6348#1      AACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAAC 217
consensus_6348#2      AACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAAC 189
consensus_6348#0      AACTGGCCCAGAAGGCGCGGAAGGAGATCGCGGACTATCTGGTCGCGGGCAAGCCCGAAC 239
                      ************************************************************

consensus_6348#1      GGGCCCGCATCCGGGTCGAGCACATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGA 277
consensus_6348#2      GGGCCCGCATCCGGGTCGAGCATATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGA 249
consensus_6348#0      GGGCCCGCATCCGGGTCGAGCACATCATCCGCGAGGACTACCTGGTGGAGGCGATGGAGA 299
                      ********************** *************************************

consensus_6348#1      TCGTGGAAATGTACTGCGATTTGATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGG 337
consensus_6348#2      TCGTGGAAATGTACTGTGATTTGATACTGGCCCGCTTCGGGCTGGTCACGCAGATGAAGG 309
consensus_6348#0      TCGTGGAAATGTACTGCGATTTGATACTGGCCCGGTTCGGGCTGGTCACGCAGATGAAGG 359
                      **************** ***************** *************************

consensus_6348#1      AGCTGGACGAGGGCATCGAGGAGGCGG------TGAGCAGCATCATCTGGGTGGC-GCCG 390
consensus_6348#2      AGCTGGACGAGGGCATCGAGGAGGCGG------TGAGCAGCATCATCTGGGTGGC-GCCG 362
consensus_6348#0      AGCCGGACCCGCTCGTGATGAAGGACGACCATTCGAGCATTATGGATGGGGAGATTGACG 419
                      *** ****  *  * *   * ***  *       *****  **     *** *   * **

consensus_6348#1      CGCCTGCAGGCGGACGTGCAGGAGCTGAAGCTGTGCT--CGGACATATTCACGCTGAAGT 448
consensus_6348#2      CGCCTGCAGGCGGACGTGCAGGAGCTGAAGCTGTGCT--CGGACATATTCACGCTGAAGT 420
consensus_6348#0      GTGCTGGTGGCGGCGGCGGCGGTGTGCTGATCGATCTGGCGGACAAGAACAATCTGGACG 479
                         ***  *****  * *  ** *        *  **  ******    **  *** *  

consensus_6348#1      ACGG--CAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCGCCCCACAAGGTGTCGGA 506
consensus_6348#2      ACGG--CAAACCGTACGCGGAGCAGGTGCGCGCCGCCATCCCACCCCACAAGGTGTCGGA 478
consensus_6348#0      GCGGTTCCGGGGGTGCTTCCGGTGGCAGTGGATCGGGAAACCGAGGCG-GTGGTGGTGGT 538
                       ***  *     ** *     *  *  * *   **  *  **    *    ****  ** 

consensus_6348#1      CAAGCTGATGCACAAGCTGGCGATACAGG-----CCCCGCCGAAGCTGCTGGTGGAGAAG 561
consensus_6348#2      CAAGCTGATGCACAAGCTGGCGATACAGG-----CCCCGCCGAAGCTGCTGGTGGAGAAG 533
consensus_6348#0      GGCAGTGGTGGCAGTGGAGGTGGTGCAGTGACCTCGCCACCGAACGTAGGCTTTGTCGCG 598
                           ** **     *  ** * * ***      * ** *****  *     * *    *

consensus_6348#1      TATCTGATCGAGATAGCGAAGATCTTTAACGTCGAGTACGAGCCGGACCCGCTCGTGATG 621
consensus_6348#2      TATCTGATCGAGATAGCGAAGATCTTTAACGTCGACTACGAGCCGGACCCGCTCGTGATG 593
consensus_6348#0      TATCCGCCAGCCATTCCACAGCTACCCGTCGT--ACCGCCGACCGTTCCGTTTCAGTATC 656
                      **** *   *  **  *  ** *      ***  *   *   ***  **   **   ** 

consensus_6348#1      AAGGACGACCATTCGAGCATTATGGATGGGGAGATTGACGGT------------------ 663
consensus_6348#2      AAGGACGACCATTCGAGCATTATGGATGGGGAGATT------------------------ 629
consensus_6348#0      CGGCTGGCCCGAGCGGTCAACATTTCGGTGCGGCTTCCGCACCACCACCGTTCAATTACA 716
                        *   * **   **  **  **    * *  * **                        

consensus_6348#1      ---------------------------------------------
consensus_6348#2      ---------------------------------------------
consensus_6348#0      ACATACCGCCCAACTCGTCGGAGAAGGAAGAGATTAAGGATTTGA 761