cluster # 6350

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Anopheles gambiae
cluster # 6350 cluster # 6350 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6350#0 length = 1166 sequences # 4

consensus_6350#1 length = 584 sequences # 1

consensusID : consensus_6350#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1166
fasta sequence

                              [CCGCCTGCCTGCCTGCCTGTGACAGTCTGCTCCTGTGTGTAAATACTGTTAAATTGCGTACCCCGGAACACGAGACCGCGCAATCTTCCCGTGAGCTCTGTCGGCTGCAGTGGGGGAAAGCAAAGGGAACCGAACAACTCCCGAAGCAAAAAAAGGCCATTCCGTGTTGTTGTCGGTGCATTACGGTTTTTTTTGCATTTCGCCTTCGAAAGGGTTTTTTT---TTGTCGCAAGCAAAAGCCGAGTTAATGTTTAAGTGATTTTAATTTTAAAACTGCCGTAAGCGAAAATGAGTTTTCTGTTTTATAATATTTTTGACAAAAAAAACCACCAACCAAACTCTCTCAACGTAGTAAAAAACACGTAAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGTGCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAG-ATGGGTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTCCTTCTGTACTCCAAACGGAAACAATCGAAACGAAGAACTCCGTGGTGTGTTTTGGGTGGTAGTAGTAGGCTCTGACGAATGTGTAGGGAACGAATGAATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTTAAACTTTTCGTTACATTAATCCGTCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTTCTTTTTTTATTTAACGCGAAAGGCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGAAGCACGATAAGAAGTAGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAACAAAGAAAACCAACAAATTGTATCAGGAATTTCAAAAAAACAAGAATCAAACTCAATTGTGAAGCGAAAGAAGATGAAAGAGGAAG-AAAAGGGAAGACGTTTTGCGTTTAATTTTTGCGGAAAAGTTTGCATCCACGATCCCTGCAATCGAGTGAAGCAAAAGAAGGAGGGAAAAAGCACGTGATCGAGAAGAAGGAGAAAAAGACAAATTATTGTTTCATTTTCAGTATCCATTTTCAAGGAGGAGAAAGTAGTGAGTAGAAGGGGCGCGTAAGAGAAATAATAAATG]

[+] EMBL BM638649             [CCGCCTGCCTGCCTGCCTGTGACAGTCTGCTCCTGTGTGTAAATACTGTTAAATTGCGTACCCCGGAACACGAGACCGCGCAATCTTCCCGTGAGCTCTGTCGGCTGCAGTGGGGGAAAGCAAAGGGAACCGAACAACTCCCGAAGCAAAAAAAGGCCATTCCGTGTTGTTGTCGGTGCATTACGGTTTTTTTTGCATTTCGCCTTCGAAAGGGTTTTTTTTTGTTGTCGCAAGCAAAAGCCGAGTTAATGTTTAAGTGATTTTAATTTTAAAACTGCCGTAAGCGAAAATGAGTTTTCTGTTTTATAATATTTTTGACAAAAAAAACCACCAACCAAACTCTCTCAACGTAGTAAAAAACACGTAAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGTGCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAGAATGGGTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTCCTTCTGTACTCCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX624118             [                                                                                                                                                                                              TTTTGCATTTCGCCTTCGAAAGGGTTTTTTT   TTGTCGCAAGCAAAAGCCGAGTTAATGTTTAAGTGATTTTAATTTTAAAACTGCCGTAAGCGAAAATGAGTTTTCTGTTTTATAATATTTTTGACAAAAAAAACCACCAACCAAACTCTCTCAACGTAGTAAAAAACACGTAAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGTGCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAG ATGGGTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTCCTTCTGTACTCCAAACGGAAACAATCGAAACGAAGAACTCCGTGGTGTGTTTTGGGTGGTAGTAGTAGGCTCTGACGAATGTGTAGGGAACGAATGAATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTTAAACTTTTCGTTACATTAATCCGTCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM619451             [                                                                                                                                                                                                                                                                                                                                            ccgCAAACTCTCTCAACGTAGTAAAAAACACGTAAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGTGCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAG ATGGGTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTCCTTCTGTACTCCAAACGGAAACAATCGAAACGAAGAACTCCGTGGTGTGTTTTGGGTGGTAGTAGTAGGCTCTGACGAATGTGTAGGGAACGAATGAATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTTAAACTTTTCGTTACATTAATCCGTCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTTCTTTTTTTATTTAACGCGAAAGGCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGAAGCACGATAAGAAGTAGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAACAAAGAAAACCAACAAATTGTATCAGGAATTTCAAAAAAACAAGAATCAAACTCAATTGTGAAGCGAAAGAAGATGAAAGAGGAAG AAAAGGGAAGACGTTTTGCGTTTAATTTTTGCGGAAAAGTTTGCATCCACGATCCC                                                                                                                                                   ]
[-] EMBL BX620704             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGAAGCACGATAAGAAGTAGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAACAAAGAAAACCAACAAATTGTATCAGGAATTTCAAAAAAACAAGAATCAAACTCAATTGTGAAGCGAAAGAAGATGAAAGAGGAAGAAAAAGGGAAGACGTTTTGCGTTTAATTTTTGCGGAAAAGTTTGCATCCACGATCCCTGCAATCGAGTGAAGCAAAAGAAGGAGGGAAAAAGCACGTGATCGAGAAGAAGGAGAAAAAGACAAATTATTGTTTCATTTTCAGTATCCATTTTCAAGGAGGAGAAAGTAGTGAGTAGAAGGGGCGCGTAAGAGAAATAATAAATG]




>consensus_6350#0
CCGCCTGCCTGCCTGCCTGTGACAGTCTGCTCCTGTGTGTAAATACTGTTAAATTGCGTA
CCCCGGAACACGAGACCGCGCAATCTTCCCGTGAGCTCTGTCGGCTGCAGTGGGGGAAAG
CAAAGGGAACCGAACAACTCCCGAAGCAAAAAAAGGCCATTCCGTGTTGTTGTCGGTGCA
TTACGGTTTTTTTTGCATTTCGCCTTCGAAAGGGTTTTTTTTTGTCGCAAGCAAAAGCCG
AGTTAATGTTTAAGTGATTTTAATTTTAAAACTGCCGTAAGCGAAAATGAGTTTTCTGTT
TTATAATATTTTTGACAAAAAAAACCACCAACCAAACTCTCTCAACGTAGTAAAAAACAC
GTAAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGT
GCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAGATGG
GTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTC
CTTCTGTACTCCAAACGGAAACAATCGAAACGAAGAACTCCGTGGTGTGTTTTGGGTGGT
AGTAGTAGGCTCTGACGAATGTGTAGGGAACGAATGAATCTCAACGGAGAAGGAATCACT
CGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTTAAACTTTTCGTTACATTAATCCG
TCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTTCTTTTTTTATTTAACGCGAAAGG
CGCGAATAACCAACCAACCAACGCGCTCCGGCGACGAAGCACGATAAGAAGTAGTGAATC
GCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAACAAAGAAAACCAACAAATTGTAT
CAGGAATTTCAAAAAAACAAGAATCAAACTCAATTGTGAAGCGAAAGAAGATGAAAGAGG
AAGAAAAGGGAAGACGTTTTGCGTTTAATTTTTGCGGAAAAGTTTGCATCCACGATCCCT
GCAATCGAGTGAAGCAAAAGAAGGAGGGAAAAAGCACGTGATCGAGAAGAAGGAGAAAAA
GACAAATTATTGTTTCATTTTCAGTATCCATTTTCAAGGAGGAGAAAGTAGTGAGTAGAA
GGGGCGCGTAAGAGAAATAATAAATG

consensusID : consensus_6350#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence

                              [CCGAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGTGCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAGATGGGTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTCCTTCTGTAGTCCAAACGGAAACAATCGAAACGAAGAACTCCGCGGTGTGTTTTGGGGTGGTAATAGTAGGCTCTGACGATGAATAGGGTGTACGATGTACGATGTGTAGGGAACGAATGAATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTTAAACTTTTCGTTACATTAATCCGTCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTTCTTTTTTTATTTAACGCGAAAGGCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGAAGCACGATAAGAAGTTGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAACAAAGAAAACCAACAAATTGTATCAGGAATTAAAAAAAAACCAG]

[+] EMBL BM613657             [CCGAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGTGCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAGATGGGTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTCCTTCTGTAGTCCAAACGGAAACAATCGAAACGAAGAACTCCGCGGTGTGTTTTGGGGTGGTAATAGTAGGCTCTGACGATGAATAGGGTGTACGATGTACGATGTGTAGGGAACGAATGAATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTTAAACTTTTCGTTACATTAATCCGTCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTTCTTTTTTTATTTAACGCGAAAGGCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGAAGCACGATAAGAAGTTGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAACAAAGAAAACCAACAAATTGTATCAGGAATTAAAAAAAAACCAG]




>consensus_6350#1
CCGAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGT
GCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAGATGG
GTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTC
CTTCTGTAGTCCAAACGGAAACAATCGAAACGAAGAACTCCGCGGTGTGTTTTGGGGTGG
TAATAGTAGGCTCTGACGATGAATAGGGTGTACGATGTACGATGTGTAGGGAACGAATGA
ATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTT
AAACTTTTCGTTACATTAATCCGTCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTT
CTTTTTTTATTTAACGCGAAAGGCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGA
AGCACGATAAGAAGTTGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAA
CAAAGAAAACCAACAAATTGTATCAGGAATTAAAAAAAAACCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6350#0      CCGCCTGCCTGCCTGCCTGTGACAGTCTGCTCCTGTGTGTAAATACTGTTAAATTGCGTA 60
consensus_6350#1      ------------------------------------------------------------
                                                                                  

consensus_6350#0      CCCCGGAACACGAGACCGCGCAATCTTCCCGTGAGCTCTGTCGGCTGCAGTGGGGGAAAG 120
consensus_6350#1      ------------------------------------------------------------
                                                                                  

consensus_6350#0      CAAAGGGAACCGAACAACTCCCGAAGCAAAAAAAGGCCATTCCGTGTTGTTGTCGGTGCA 180
consensus_6350#1      ------------------------------------------------------------
                                                                                  

consensus_6350#0      TTACGGTTTTTTTTGCATTTCGCCTTCGAAAGGGTTTTTTTTTGTCGCAAGCAAAAGCCG 240
consensus_6350#1      ------------------------------------------------------------
                                                                                  

consensus_6350#0      AGTTAATGTTTAAGTGATTTTAATTTTAAAACTGCCGTAAGCGAAAATGAGTTTTCTGTT 300
consensus_6350#1      ------------------------------------------------------------
                                                                                  

consensus_6350#0      TTATAATATTTTTGACAAAAAAAACCACCAACCAAACTCTCTCAACGTAGTAAAAAACAC 360
consensus_6350#1      ------------------------------------------------------------
                                                                                  

consensus_6350#0      GTAAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGT 420
consensus_6350#1      CCGAACGAGAACGACCCCGTCCTTTTTTCACAGTACTTTTGTAAACGTGCGCGAATGTGT 60
                         *********************************************************

consensus_6350#0      GCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAGATGG 480
consensus_6350#1      GCGAAGCAAAAAACACGGACAATGAAACACACCCAGGAGAGAGGGGGATAGGAGAGATGG 120
                      ************************************************************

consensus_6350#0      GTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTC 540
consensus_6350#1      GTGATGTTTCTTTGTTCGTGCTTAAGTTTAAGCAGTTTAGTTAGTAGAGCCATTTTTTTC 180
                      ************************************************************

consensus_6350#0      CTTCTGTACTCCAAACGGAAACAATCGAAACGAAGAACTCCGTGGTGTGTTTTGGG-TGG 599
consensus_6350#1      CTTCTGTAGTCCAAACGGAAACAATCGAAACGAAGAACTCCGCGGTGTGTTTTGGGGTGG 240
                      ******** ********************************* ************* ***

consensus_6350#0      TAGTAGTAGGCTCTGACGA----------------------ATGTGTAGGGAACGAATGA 637
consensus_6350#1      TAATAGTAGGCTCTGACGATGAATAGGGTGTACGATGTACGATGTGTAGGGAACGAATGA 300
                      ** ****************                      *******************

consensus_6350#0      ATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTT 697
consensus_6350#1      ATCTCAACGGAGAAGGAATCACTCGAGAACAACACCGGGGGAGGTCGATGTTTTAAGTTT 360
                      ************************************************************

consensus_6350#0      AAACTTTTCGTTACATTAATCCGTCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTT 757
consensus_6350#1      AAACTTTTCGTTACATTAATCCGTCCTTTAAGAGATAGTTTTGTTTTTTAAATATATTTT 420
                      ************************************************************

consensus_6350#0      CTTTTTTTATTTAACGCGAAAGGCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGA 817
consensus_6350#1      CTTTTTTTATTTAACGCGAAAGGCGCGAATAACCAACCAACCAACGCGCTCCGGCGACGA 480
                      ************************************************************

consensus_6350#0      AGCACGATAAGAAGTAGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAA 877
consensus_6350#1      AGCACGATAAGAAGTTGTGAATCGCGTGGAAACAACAAAATGATAGAAAGTGGTAATAAA 540
                      *************** ********************************************

consensus_6350#0      CAAAGAAAACCAACAAATTGTATCAGGAATTTCAAAAAAACAAGAATCAAACTCAATTGT 937
consensus_6350#1      CAAAGAAAACCAACAAATTGTATCAGGAATTAAAAAAAAACCAG---------------- 584
                      *******************************  ******** **                

consensus_6350#0      GAAGCGAAAGAAGATGAAAGAGGAAGAAAAGGGAAGACGTTTTGCGTTTAATTTTTGCGG 997
consensus_6350#1      ------------------------------------------------------------
                                                                                  

consensus_6350#0      AAAAGTTTGCATCCACGATCCCTGCAATCGAGTGAAGCAAAAGAAGGAGGGAAAAAGCAC 1057
consensus_6350#1      ------------------------------------------------------------
                                                                                  

consensus_6350#0      GTGATCGAGAAGAAGGAGAAAAAGACAAATTATTGTTTCATTTTCAGTATCCATTTTCAA 1117
consensus_6350#1      ------------------------------------------------------------
                                                                                  

consensus_6350#0      GGAGGAGAAAGTAGTGAGTAGAAGGGGCGCGTAAGAGAAATAATAAATG 1166
consensus_6350#1      -------------------------------------------------