cluster # 6358

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Anopheles gambiae
cluster # 6358 cluster # 6358 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6358#0 length = 490 sequences # 2
consensus_6358#1 length = 453 sequences # 1

consensus_6358#2 length = 449 sequences # 1
consensus_6358#3 length = 317 sequences # 1

consensusID : consensus_6358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 490
fasta sequence

                              [AATTCCCCGAGGTTGTGGGACAGGTTTAA-AGACTTTCTCTGGCCAGCTCGTTGGCTCGTTGGCTCGTGAGCGTTACTAGTTACTTTGGAGGGCAAGTGCTGATTCCTGACTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAAACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTTTTCGCTGCCGTCG-CCTGCTGCTGGTCCTCTTCATTGCGCACAG-ACGTCCGCCAGTGTCGTGGCCAGTGCCCGCCTCCGACGCGTGCACAAATCGACCTACTCGGAAGCGGCCCCG-CGGACAGCGCCG-CATGCAGTCGATTGCCAGCGGTCGGGCCGGCGCGAAAGCACACCCGAAGGAGGGGCACGTTGGGGTGGGCCGTTTGGCACCG-CAAGAAGACGACCGTCACGACGATGAAGTCCACCAG-ACCACCCTGCGGCAGC]

[+] EMBL AL694622             [AATTCCCCGAGGTTGTGGGACAGGTTTAA AGACTTTCTCTGGCCAGCTCGTTGGCTCGTTGGCTCGTGAGCGTTACTAGTTACTTTGGAGGGCAAGTGCTGATTCCTGACTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAAACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTTTTCGCTGCCGTCG CCTGCTGCTGGTCCTCTTCATTGCGCACAG ACGTCCGCCAGTGTCGTGGCCAGTGCCCGCCTCCGACGCGTGCACAAATCGACCTACTCGGAAGCGGCCCCG CGGACAGCGCCG CATGCAGTCGATTGCCAGCGGTCGGGCCGGCGCGAAAGCACACCCGAAGGAGGGGCACGTTGGGGTGGGCCGTTTGGCACCG CAAGAAGACGACCGTCACGACGATGAAGTCCACCAG ACCACCCTGCGGCAGC]
[+] EMBL AL933160             [     aggttaaccGTGGNACAGGTTTAANCGACTTTCTCTGGCCAGCTCGTTGGCTCGTTGGCTCGTGAGCGTTACTAGTTACTTTGGAGGGCAAGTGCTGATTCCTGACTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAAACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTTTTCGCTGCCGTCGCCCTGCTGCTGGTCCTCTTCATTGCGCACAGCACGTCCGCCAGTGTCGTGGCCAGTGCCCGCCTCCGACGCGTGCACAAATCGACCTACTCGGAAGCGGCCCCGCCGGACAGCGCCGCCATGCAGTCGATTGCCAGCGGTCGGGCCGGCGCGAAAGCACACCCGAAGGAGGGGCACGTTGGGGTGGGCCGTTTGGCACCGCCAAGAAGACGACCGTCACGACGATGAAGTCCACCAGCACCACCCT        ]




>consensus_6358#0
AATTCCCCGAGGTTGTGGGACAGGTTTAAAGACTTTCTCTGGCCAGCTCGTTGGCTCGTT
GGCTCGTGAGCGTTACTAGTTACTTTGGAGGGCAAGTGCTGATTCCTGACTTCGAACTCC
TCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAAACGCATCATTC
AGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTTTTCGCTGCCGT
CGCCTGCTGCTGGTCCTCTTCATTGCGCACAGACGTCCGCCAGTGTCGTGGCCAGTGCCC
GCCTCCGACGCGTGCACAAATCGACCTACTCGGAAGCGGCCCCGCGGACAGCGCCGCATG
CAGTCGATTGCCAGCGGTCGGGCCGGCGCGAAAGCACACCCGAAGGAGGGGCACGTTGGG
GTGGGCCGTTTGGCACCGCAAGAAGACGACCGTCACGACGATGAAGTCCACCAGACCACC
CTGCGGCAGC

consensusID : consensus_6358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [AGATCCCCCGAGGNTTTCTCTGGCCAGCTCGTTGGCTCGTTGGCTCGTGAGCGTTACTATTACTTTGGAGGGCAAGTGCTGATTCCTGACTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAAACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTTTTCGCTGCCGTCGCCCTGCTGCTGGTCCTCTTCATTGCGCACAGCACGTCCGCCAGTGTCGTGGCCAGTGCCCGCCTCCGACGCGTGCACAAATCGACCTACTCGGAAGCGGCCCCGCCGGACAGCGCCGCCATGCAGTCGATTGCCACGCGGTCGGGCCGGCGCGAAAGCACACCCGAAGGAGGGGCACGTTGGGGTGGGCCGTTTGGCCACCGCCAAGAAGACGACCGTCACGACGATGAAG]

[+] EMBL AL932188             [AGATCCCCCGAGGNTTTCTCTGGCCAGCTCGTTGGCTCGTTGGCTCGTGAGCGTTACTATTACTTTGGAGGGCAAGTGCTGATTCCTGACTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAAACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTTTTCGCTGCCGTCGCCCTGCTGCTGGTCCTCTTCATTGCGCACAGCACGTCCGCCAGTGTCGTGGCCAGTGCCCGCCTCCGACGCGTGCACAAATCGACCTACTCGGAAGCGGCCCCGCCGGACAGCGCCGCCATGCAGTCGATTGCCACGCGGTCGGGCCGGCGCGAAAGCACACCCGAAGGAGGGGCACGTTGGGGTGGGCCGTTTGGCCACCGCCAAGAAGACGACCGTCACGACGATGAAG]




>consensus_6358#1
AGATCCCCCGAGGNTTTCTCTGGCCAGCTCGTTGGCTCGTTGGCTCGTGAGCGTTACTAT
TACTTTGGAGGGCAAGTGCTGATTCCTGACTTCGAACTCCTCGCGTGTCATCTCGTGCGC
TGTACACCTGCACCACTTCAATCAACCAAACGCATCATTCAGCACGCACCAACATGGCGA
CAGGAGCAACGCCCGCGCTGTGGAAGCTTTTCGCTGCCGTCGCCCTGCTGCTGGTCCTCT
TCATTGCGCACAGCACGTCCGCCAGTGTCGTGGCCAGTGCCCGCCTCCGACGCGTGCACA
AATCGACCTACTCGGAAGCGGCCCCGCCGGACAGCGCCGCCATGCAGTCGATTGCCACGC
GGTCGGGCCGGCGCGAAAGCACACCCGAAGGAGGGGCACGTTGGGGTGGGCCGTTTGGCC
ACCGCCAAGAAGACGACCGTCACGACGATGAAG

consensusID : consensus_6358#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [GAATCGCCACGAGGTAACTCAACCGTGGGACAGGTTTAAAGACTTTCTCTGGCCAGCTCGTTGGCTCGTTGGCTCGTGAGCGTTACTAGTTACTTTGGAGGGCAAGTGCTGAGTTCCTGACTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAAACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTTTTCGCTGCCGTCGCCCTGCTGCTGGTCCGTCTTCATTGCGCACAGCACGTCCGCCAGTGTCGTGGCCAGTGCCCGCCTCCGACGCGTGCACAAATCGACCTACTCGGAAGCGGCCCCGCCGGACAGCGCCGCCATGCAGTCGATTGCCAGCGGTCGGGCCGGCGCGAAAGCACANCCGAAGGANGGGCACGTTGGGGTGGGCCGTNTTG]

[+] EMBL BX466602             [GAATCGCCACGAGGTAACTCAACCGTGGGACAGGTTTAAAGACTTTCTCTGGCCAGCTCGTTGGCTCGTTGGCTCGTGAGCGTTACTAGTTACTTTGGAGGGCAAGTGCTGAGTTCCTGACTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAAACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTTTTCGCTGCCGTCGCCCTGCTGCTGGTCCGTCTTCATTGCGCACAGCACGTCCGCCAGTGTCGTGGCCAGTGCCCGCCTCCGACGCGTGCACAAATCGACCTACTCGGAAGCGGCCCCGCCGGACAGCGCCGCCATGCAGTCGATTGCCAGCGGTCGGGCCGGCGCGAAAGCACANCCGAAGGANGGGCACGTTGGGGTGGGCCGTNTTG]




>consensus_6358#2
GAATCGCCACGAGGTAACTCAACCGTGGGACAGGTTTAAAGACTTTCTCTGGCCAGCTCG
TTGGCTCGTTGGCTCGTGAGCGTTACTAGTTACTTTGGAGGGCAAGTGCTGAGTTCCTGA
CTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAA
ACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTT
TTCGCTGCCGTCGCCCTGCTGCTGGTCCGTCTTCATTGCGCACAGCACGTCCGCCAGTGT
CGTGGCCAGTGCCCGCCTCCGACGCGTGCACAAATCGACCTACTCGGAAGCGGCCCCGCC
GGACAGCGCCGCCATGCAGTCGATTGCCAGCGGTCGGGCCGGCGCGAAAGCACANCCGAA
GGANGGGCACGTTGGGGTGGGCCGTNTTG

consensusID : consensus_6358#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [AATCGNCACGAGGTGTACTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAAACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTTTTCGCTGCCGTCGCCCTGACTGCTGGTCCTCTTCATTGCGCACAGNGACGTCCGCCAGGTGTCGTGGCCAGTGCCCGCGCGTCCGACGCGGTGCACAAAGTCGACCTACTCGGAAGCGGACCCGGCCGGGACAGACGCCGANCATGCAGGTCGATNGCCAGGCGGGTCGGGACCGGGCGT]

[+] EMBL BX469497             [AATCGNCACGAGGTGTACTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAAACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTTTTCGCTGCCGTCGCCCTGACTGCTGGTCCTCTTCATTGCGCACAGNGACGTCCGCCAGGTGTCGTGGCCAGTGCCCGCGCGTCCGACGCGGTGCACAAAGTCGACCTACTCGGAAGCGGACCCGGCCGGGACAGACGCCGANCATGCAGGTCGATNGCCAGGCGGGTCGGGACCGGGCGT]




>consensus_6358#3
AATCGNCACGAGGTGTACTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCA
CCACTTCAATCAACCAAACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGC
CCGCGCTGTGGAAGCTTTTCGCTGCCGTCGCCCTGACTGCTGGTCCTCTTCATTGCGCAC
AGNGACGTCCGCCAGGTGTCGTGGCCAGTGCCCGCGCGTCCGACGCGGTGCACAAAGTCG
ACCTACTCGGAAGCGGACCCGGCCGGGACAGACGCCGANCATGCAGGTCGATNGCCAGGC
GGGTCGGGACCGGGCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6358#0      ----------AATTCCCCGAGGTTGTGGGACAGGTTTAAAGACTTTCTCTGGCCAGCTCG 50
consensus_6358#1      -----------------------------AGATCCCCCGAGGNTTTCTCTGGCCAGCTCG 31
consensus_6358#2      GAATCGCCACGAGGTAACTCAACCGTGGGACAGGTTTAAAGACTTTCTCTGGCCAGCTCG 60
consensus_6358#3      ------------------------------------------------------------
                                                                                  

consensus_6358#0      TTGGCTCGTTGGCTCGTGAGCGTTACTAGTTACTTTGGAGGGCAAGTGCTGA-TTCCTGA 109
consensus_6358#1      TTGGCTCGTTGGCTCGTGAGCGTTACTA-TTACTTTGGAGGGCAAGTGCTGA-TTCCTGA 89
consensus_6358#2      TTGGCTCGTTGGCTCGTGAGCGTTACTAGTTACTTTGGAGGGCAAGTGCTGAGTTCCTGA 120
consensus_6358#3      -------------------------------------------AATCGNCACGAGGTGTA 17
                                                                 **  *           *

consensus_6358#0      CTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAA 169
consensus_6358#1      CTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAA 149
consensus_6358#2      CTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAA 180
consensus_6358#3      CTTCGAACTCCTCGCGTGTCATCTCGTGCGCTGTACACCTGCACCACTTCAATCAACCAA 77
                      ************************************************************

consensus_6358#0      ACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTT 229
consensus_6358#1      ACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTT 209
consensus_6358#2      ACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTT 240
consensus_6358#3      ACGCATCATTCAGCACGCACCAACATGGCGACAGGAGCAACGCCCGCGCTGTGGAAGCTT 137
                      ************************************************************

consensus_6358#0      TTCGCTGCCGTCGCC-TG-CTGCTGGTCC-TCTTCATTGCGCACAG--ACGTCCGCCAG- 283
consensus_6358#1      TTCGCTGCCGTCGCCCTG-CTGCTGGTCC-TCTTCATTGCGCACAGC-ACGTCCGCCAG- 265
consensus_6358#2      TTCGCTGCCGTCGCCCTG-CTGCTGGTCCGTCTTCATTGCGCACAGC-ACGTCCGCCAG- 297
consensus_6358#3      TTCGCTGCCGTCGCCCTGACTGCTGGTCC-TCTTCATTGCGCACAGNGACGTCCGCCAGG 196
                      *************** ** ********** ****************  *********** 

consensus_6358#0      TGTCGTGGCCAGTGCCCGCC--TCCGACGCG-TGCACAAA-TCGACCTACTCGGAAGCGG 339
consensus_6358#1      TGTCGTGGCCAGTGCCCGCC--TCCGACGCG-TGCACAAA-TCGACCTACTCGGAAGCGG 321
consensus_6358#2      TGTCGTGGCCAGTGCCCGCC--TCCGACGCG-TGCACAAA-TCGACCTACTCGGAAGCGG 353
consensus_6358#3      TGTCGTGGCCAGTGCCCGCGCGTCCGACGCGGTGCACAAAGTCGACCTACTCGGAAGCGG 256
                      *******************   ********* ******** *******************

consensus_6358#0      CCCCG--C-GGACAG-CGCCG-C-ATGCAG-TCGATTGCCA-GCGG-TCGGGCCGGCGCG 390
consensus_6358#1      CCCCG--CCGGACAG-CGCCG-CCATGCAG-TCGATTGCCACGCGG-TCGGGCCGGCGCG 375
consensus_6358#2      CCCCG--CCGGACAG-CGCCG-CCATGCAG-TCGATTGCCA-GCGG-TCGGGCCGGCGCG 406
consensus_6358#3      ACCCGGCCGGGACAGACGCCGANCATGCAGGTCGATNGCCAGGCGGGTCGGGACCGGGCG 316
                       ****  * ****** *****   ****** ***** **** **** ***** * * ***

consensus_6358#0      AAAGCACACCCGAAGGAGGGGCACGTTGGGGTGGGCCGTTTGGC-ACCGC-AAGAAGACG 448
consensus_6358#1      AAAGCACACCCGAAGGAGGGGCACGTTGGGGTGGGCCGTTTGGCCACCGCCAAGAAGACG 435
consensus_6358#2      AAAGCACANCCGAAGGANGGGCACGTTGGGGTGGGCCGTNTTG----------------- 449
consensus_6358#3      T----------------------------------------------------------- 317
                                                                                  

consensus_6358#0      ACCGTCACGACGATGAAGTCCACCAGACCACCCTGCGGCAGC 490
consensus_6358#1      ACCGTCACGACGATGAAG------------------------ 453
consensus_6358#2      ------------------------------------------
consensus_6358#3      ------------------------------------------