cluster # 6364

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Anopheles gambiae
cluster # 6364 cluster # 6364 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6364#0 length = 990 sequences # 4

consensus_6364#1 length = 339 sequences # 1

consensusID : consensus_6364#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 990
fasta sequence

                              [GCAAGAATCGGCACGATGGAGTGTCTAGTGCGGAGGTATTTCTTCGTTTGCAACAATGAAGCTACTGGTTGTGCTGCTCGCCCTTGGGGGCATTGTGGGGCTGCATGGATTTAAGATCTGTGACCGTATGGCACCCGGTACGATAATGGGAAGTCCAACGAACTGCAGCGAGTTCTACATGTGCCGCAATGGGCGGCCCGTCCTATTCGCCTGCCCGGAGAACATGTACTTCGATGTGGATACGTCCGCCTGTGGCTACGAAGCGTTCTGTGCCGACAACGATGTTGACTTCGAGCAGGATCCTTACGAACCGCCCGTACCAGA-GTACAGACCGATCG-AGGCGAACCCATCGCAGCTCGTC-CCAACGCAAACCAGCGTGTGTCGCGGTGCTGCTCCCGGTGCCGTTCGC-ACCGATACGACCGGCTGC-AGTGC-ATTCTACCAGTGTACGAAGGCTGGCCCGCTGCGACTCGAGTGTCCAGCCGGTACGCT-GTTCGA-CAGCAATCGGTTGGTGTGCGATGCGGCCGATATCGTTTCCTGTGCCTACGC-ACCACCGAAA-CCTTCCATTGGCGGTGGTGGTACTGGCAGTGGCAACTTGCTCGAGGTACTGTGCTTCGGCAAGAAGAATGGCTACAAGTTTGCGCACCCGACCAACTGTGCACGGTACGTCGTGTGCAATGGGCGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGCTTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTAGAGTGCTAGGGTGTCGCGGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGCTTGACTCTTCATTACAGGTGGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATTTGAACGGGGGTTTTGTTATTTTAATTGGATTAAAAGCATGCATCAAAACGGAGGGAAGGACATAAGGACAACAGTAGTGCTGAAGTTGTCCT]

[+] EMBL BX469881             [GCAAGAATCGGCACGATGGAGTGTCTAGTGCGGAGGTATTTCTTCGTTTGCAACAATGAAGCTACTGGTTGTGCTGCTCGCCCTTGGGGGCATTGTGGGGCTGCATGGATTTAAGATCTGTGACCGTATGGCACCCGGTACGATAATGGGAAGTCCAACGAACTGCAGCGAGTTCTACATGTGCCGCAATGGGCGGGCCGTCCTATTCGCCTGCCCGGAGAACATGTACTTCGATGTGGATACGTCCGCCTGTGGCTACGAAGCGTTCTGTGCCGACAACGATGTTGACTTCGAGCAGGATCCTTACGAACCGGCCGTACCAGAGGTACAGACCGATCGAAGGCGAACCCATCGNAGCTCGTCTCCAACGCAAACCAGCGTGTGTCGCGGTGCTGCTCCCGGTGCCGTTCGCGACCGATACGANCGGNTGCGAGTGCGATTCTACCAGTGTACGAAGGCTGGCCCGCTGCGACTCGAGTGTCCAGCCGGTACGCTGGTTCGAGCAGCAATCGGTTGGTGTGCGATGCGGCCGATATCGNTTCCTGTGCCTACGCGACCACCGAAAGCGTTCCATTGGCGGTGGT                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX624363             [                                  GGTAATTTTTCGTTTGCAACAATGAAGCTACTGGTTGTGCTGCTCGCCCTTGGGGGCATTGTGGGGCTGCATGGATTTAAGATCTGTGACCGTATGGCACCCGGTACGATAATGGGAAGTCCAACGAACTGCAGCGAGTTCTACATGTGCCGCAATGGGCGGCCCGTCCTATTCGCCTGCCCGGAGAACATGTACTTCGATGTGGATACGTCCGCCTGTGGCTACGAAGCGTTCTGTGCCGACAACGATGTTGATTTCGAGCAGGATCCTTACGAACCGCCCGTACCAGA GTACAGACCGATCG AAGCGANCCCATCGCAGCTCGTC CCAACGCAAACCAGCGTGTGTCGCGGTGCTGCTCCCGGTGCCGTTCGC ACCGATACGACCGGCTGC AGTGC ATTCTACCAGTGTACGAANGCTGGCCCGCTGCGACTCGAGTGTCCAGCCGGTACGCT GTTCGA CAGCAATCGGTTGGTGTGCGATGCGGGCGATATCGTTTCCNGTGCCTACGC ACCAACGAAA CC                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX627292             [                                                 GCAACAATGAAGCTACTGGTTGTGCTACTCGCCCTTGGGGGCATTGTGGGGCTGCATGGATTTAAGATCTGTGACCGTATGGCACCCGGTACGATAATGGGAAGTCCAACGAACTGCAGCGAGTTCTACATGTGCCGCAATGGGCGGCCCGTCCTATTCGCCTGCCCNGAGAACATGTACTTCGATGTGGATACGTCCGCCTGTGGCTACGAAGCGTTCTGTGCCGACAACGATGTTGACTTCGAGCAGGATCCTTACGAACCGCCCGTACCAGA GTACAGACCGATCG AGGCCAACCCATCGCAGCTCGTC CCAACGCAAACCAGCGTGTGTCGCGGTGCTGCTCCCGGTGCCGTTCGC ACCGATACGACCGGCTGC AGTGC ATTCTACCAGTGTACGAAGGCTGGCCCGCTGCGTCTTGAGTGTCCAGCCGGTACGCT GTTCGA CAGCAATCGGTTGGTGTGTGATGCGGCCGATATCGTTTCCTGTGCCTACGC ACCACCGAAA CCTTCCATTGGCGGTGGTGGTACTGGCAGTGGCAACTTGCTCGAGGTACTGTGCTTCGGCAAGAAGAATGGCTACAAGTTTGCGCACCCGACCAACTGTGCACGGTACGTCGTGTGCAATGGGCGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGC                                                                                                                                                                                                                                                                              ]
[+] EMBL BX625688             [                                                                                                                                                                                                                                                                                                                                                                                         GCGTGTGTCGCGGTGCTGCTCCCGGTGCCGTTCGC ACCGATACGACCGGCTGC AGTGC ATTCTACCAGTGTACGAAGGCTGGCCCGCTGCGTCTTGAGTGTCCAGCCGGTACGCT GTTCGA CAGCAATCGGTTGGTGTGTGATGCGGCCGATATCGTTTCCTGTGCCTACGC ACCACCGAAA CCTTCCATTGGCGGTGGTGGTACTGGCAGTGGCAACTTGCTCGAGGTACTGTGCTTCGGCAAGAAGAATGGCTACAAGTTTGCGCACCCGACCAACTGTGCACGGTACGTCGTGTGCAATGGGCGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGCTTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTAGAGTGCTAGGGTGTCGCGGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGCTTGACTCTTCATTACAGGTGGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATTTGAACGGGGGTTTTGTTATTTTAATTGGATTAAAAGCATGCATCAAAACGGAGGGAAGGACATAAGGACAACAGTAGTGCTGAAGTTGTCCT]




>consensus_6364#0
GCAAGAATCGGCACGATGGAGTGTCTAGTGCGGAGGTATTTCTTCGTTTGCAACAATGAA
GCTACTGGTTGTGCTGCTCGCCCTTGGGGGCATTGTGGGGCTGCATGGATTTAAGATCTG
TGACCGTATGGCACCCGGTACGATAATGGGAAGTCCAACGAACTGCAGCGAGTTCTACAT
GTGCCGCAATGGGCGGCCCGTCCTATTCGCCTGCCCGGAGAACATGTACTTCGATGTGGA
TACGTCCGCCTGTGGCTACGAAGCGTTCTGTGCCGACAACGATGTTGACTTCGAGCAGGA
TCCTTACGAACCGCCCGTACCAGAGTACAGACCGATCGAGGCGAACCCATCGCAGCTCGT
CCCAACGCAAACCAGCGTGTGTCGCGGTGCTGCTCCCGGTGCCGTTCGCACCGATACGAC
CGGCTGCAGTGCATTCTACCAGTGTACGAAGGCTGGCCCGCTGCGACTCGAGTGTCCAGC
CGGTACGCTGTTCGACAGCAATCGGTTGGTGTGCGATGCGGCCGATATCGTTTCCTGTGC
CTACGCACCACCGAAACCTTCCATTGGCGGTGGTGGTACTGGCAGTGGCAACTTGCTCGA
GGTACTGTGCTTCGGCAAGAAGAATGGCTACAAGTTTGCGCACCCGACCAACTGTGCACG
GTACGTCGTGTGCAATGGGCGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGC
TTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTAGAGTGCTAGGGTGTCGC
GGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGCT
TGACTCTTCATTACAGGTGGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATTTG
AACGGGGGTTTTGTTATTTTAATTGGATTAAAAGCATGCATCAAAACGGAGGGAAGGACA
TAAGGACAACAGTAGTGCTGAAGTTGTCCT

consensusID : consensus_6364#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [GCAGAATCGCGCACGAGNGGACGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGCTTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTAAGTGCTAGGGTGTCGCGGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGCTTGACTCTTCATTACAGGTAGGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATTTGAACGGGGGTTTCNGTTATTTTCATTGGATTAAAAGCATGCATCAAGAACGGAGGGAAGGACATAAGGACAAACAGTAGTGCTGACAGTTGTCCTGCT]

[+] EMBL BX468820             [GCAGAATCGCGCACGAGNGGACGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGCTTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTAAGTGCTAGGGTGTCGCGGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGCTTGACTCTTCATTACAGGTAGGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATTTGAACGGGGGTTTCNGTTATTTTCATTGGATTAAAAGCATGCATCAAGAACGGAGGGAAGGACATAAGGACAAACAGTAGTGCTGACAGTTGTCCTGCT]




>consensus_6364#1
GCAGAATCGCGCACGAGNGGACGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACG
GCTTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTAAGTGCTAGGGTGTCG
CGGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGC
TTGACTCTTCATTACAGGTAGGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATT
TGAACGGGGGTTTCNGTTATTTTCATTGGATTAAAAGCATGCATCAAGAACGGAGGGAAG
GACATAAGGACAAACAGTAGTGCTGACAGTTGTCCTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6364#0      GCAAGAATCGGCACGATGGAGTGTCTAGTGCGGAGGTATTTCTTCGTTTGCAACAATGAA 60
consensus_6364#1      ------------------------------------------------------------
                                                                                  

consensus_6364#0      GCTACTGGTTGTGCTGCTCGCCCTTGGGGGCATTGTGGGGCTGCATGGATTTAAGATCTG 120
consensus_6364#1      ------------------------------------------------------------
                                                                                  

consensus_6364#0      TGACCGTATGGCACCCGGTACGATAATGGGAAGTCCAACGAACTGCAGCGAGTTCTACAT 180
consensus_6364#1      ------------------------------------------------------------
                                                                                  

consensus_6364#0      GTGCCGCAATGGGCGGCCCGTCCTATTCGCCTGCCCGGAGAACATGTACTTCGATGTGGA 240
consensus_6364#1      ------------------------------------------------------------
                                                                                  

consensus_6364#0      TACGTCCGCCTGTGGCTACGAAGCGTTCTGTGCCGACAACGATGTTGACTTCGAGCAGGA 300
consensus_6364#1      ------------------------------------------------------------
                                                                                  

consensus_6364#0      TCCTTACGAACCGCCCGTACCAGAGTACAGACCGATCGAGGCGAACCCATCGCAGCTCGT 360
consensus_6364#1      ------------------------------------------------------------
                                                                                  

consensus_6364#0      CCCAACGCAAACCAGCGTGTGTCGCGGTGCTGCTCCCGGTGCCGTTCGCACCGATACGAC 420
consensus_6364#1      ------------------------------------------------------------
                                                                                  

consensus_6364#0      CGGCTGCAGTGCATTCTACCAGTGTACGAAGGCTGGCCCGCTGCGACTCGAGTGTCCAGC 480
consensus_6364#1      ------------------------------------------------------------
                                                                                  

consensus_6364#0      CGGTACGCTGTTCGACAGCAATCGGTTGGTGTGCGATGCGGCCGATATCGTTTCCTGTGC 540
consensus_6364#1      ------------------------------------------------------------
                                                                                  

consensus_6364#0      CTACGCACCACCGAAACCTTCCATTGGCGGTGGTGGTACTGGCAGTGGCAACTTGCTCGA 600
consensus_6364#1      ------------------------------------------------------------
                                                                                  

consensus_6364#0      GGTACTGTGCTTCGGCAAGAAGAATGGCTACAAGTTTGCGCACCCGACCAACTGTGCACG 660
consensus_6364#1      ---------------------------------------------------------GCA 3
                                                                                * 

consensus_6364#0      GTACGTCGTGTGCAATGGGCGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGC 720
consensus_6364#1      GAATCGCGCACG-AGNGGACGTAACAAGGCGCAGGAGTTTACCTGCCCGACCGGAACGGC 62
                      * *   **   * *  ** *****************************************

consensus_6364#0      TTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTAGAGTGCTAGGGTGTCGC 780
consensus_6364#1      TTACAATAAGCAGCGCAAAATTTGTGACTTTACGCACAACGTA-AGTGCTAGGGTGTCGC 121
                      ******************************************* ****************

consensus_6364#0      GGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGCT 840
consensus_6364#1      GGGGGGCTTAATCTGAAATCGATGACAAAAAACCCCCTGATATTCCGAAAGGCACGTGCT 181
                      ************************************************************

consensus_6364#0      TGACTCTTCATTACAGGT-GGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATTT 899
consensus_6364#1      TGACTCTTCATTACAGGTAGGTAGGGAACGGCTGGTTGATTCGAAAAATGCTTCCGATTT 241
                      ****************** *****************************************

consensus_6364#0      GAACGGGGGTTT-TGTTATTTTAATTGGATTAAAAGCATGCATCAA-AACGGAGGGAAGG 957
consensus_6364#1      GAACGGGGGTTTCNGTTATTTTCATTGGATTAAAAGCATGCATCAAGAACGGAGGGAAGG 301
                      ************  ******** *********************** *************

consensus_6364#0      ACATAAGGACAA-CAGTAGTGCTGA-AGTTGTCCT--- 990
consensus_6364#1      ACATAAGGACAAACAGTAGTGCTGACAGTTGTCCTGCT 339
                      ************ ************ *********