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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1014 fasta sequence
[CCGCCCACGCGTCCGGCAACATTCTTCGAGTCTTCAAGAATGATGAAACGCATAGGCATAGGCAGCGGGTAGAATACATTTTAAATATGACGACAATGGCAATAAATGTGAACATAGATAAGGATATAAAGAAACGCCTGCCGCAAAACAATAGATCCATTTTGCTCGATTTTCGGTCACCTAAAATTGCATAAAAGCTATTATAATGCGCGATTATAACGATACTACTCCAAATTTGACTTTTCATGTACAGTGTTGTGGCTGGAGCGGCACGTACACCTAATTGGGTTGCATATTATCAAGGCTAGAAATGATGTATCTTTGCATATCCGACTCTCTGCTTCGATGTGGTTCGATAGCACGTTTGTTTTGTGTTTGGTATTCTGAAGATGAGAAGACATGAAAAGAAGAAAAAATCACGTGTGTCAGAAAACAGCAATTGAACGTCATAACGTATATTGTTCAAACAAAATGTGTGATAATAATTAATTCGAAAAATACTCTCAAAACACAAACACCCTCACGTACGTACACGCACTGTACGCACTGCTGCTTGACTCCCGAGCGGCGGGAGTGCAACGGATTGGGCGGAAGTAGGAATGACATCTACTACTACTACTACTTAAGCAACACAAACACAACACGACGACTACCCAAAACGACAACAAATAGCATATTTAAGAGTAGGTGATACACATACACTCAAACACGGGCACGTAAAAGGTGTAAAAAATGGTAAAGCAACTGCACGATATCACGACACAATATACTAATATTCAGCGTGTGCAAGTATGGAATGATGGTGTCTCGCTCAAGACCCAGTTCGATGTTAGTTGATGAGCCTTCCAATAACAACAAAAACAACAACCAAAAGAAATGGAAAAATGGGGCACTCACGGGGGATAAGTGTGTAGGCATATATGGTTTTTAATTACTCACATTCACTTAAGTCACCAGAACGAAAAAAAAAACTGCATTTTGTGTGCAATTTTGCGCTTCCAATTCCAACTGTAA]
[+] EMBL BM626256 [CCGCCCACGCGTCCGGCAACATTCTTCGAGTCTTCAAGAATGATGAAACGCATAGGCATAGGCAGCGGGTAGAATACATTTTAAATATGACGACAATGGCAATAAATGTGAACATAGATAAGGATATAAAGAAACGCCTGCCGCAAAACAATAGATCCATTTTGCTCGATTTTCGGTCACCTAAAATTGCATAAAAGCTATTATAATGCGCGATTATAACGATACTACTCCAAATTTGACTTTTCATGTACAGTGTTGTGGCTGGAGCGGCACGTACACCTAATTGGGTTGCATATTATCAAGGCTAGAAATGATGTATCTTTGCATATCCGACTCTCTGCTTCGATGTGGTTCGATAGCACGTTTGTTTTGTGTTTGGTATTCTGAAGATGAGAAGACATGAAAAGAAGAAAAAATCACGTGTGTCAGAAAACAGCAATTGAACGTCATAACGTATATTGTTCAAACAAAATGTGTGATAATAATTAATTCGAAAAATACTCTCAAAACACAAACACCCTCACGTACGTACACGCACTGTACGCACTGCTGCTTGACTCCCGAGCGGCGGGAGTGCAACGGATTGGGCGGAAGTAGGAATGACATCTACTACTACTACTACTTAAGCAACACAAACACAACACGACGACTACCCAAAACGA ]
[+] EMBL BM624982 [ ccgGTATCTTTGCATATCCGACTCTCTGCTTCGATGTGGTTCGATAGCACGTTTGTTTTGTGTTTGGTATTCTGAAGATGAGAAGACATGAAAAGAAGAAAAAATCACGTGTGTCAGAAAACAGCAATTGAACGTCATAACGTATATTGTTCAAACAAAATGTGTGATAATAATTAATTCGAAAAATACTCTCAAAACACAAACACCCTCACGTACGTACACGCACTGTACGCACTGCTGCTTG GTCCCGAGCGGCGGGAGTGCAACGGATTGGGCGGAAGTAGGAATGACATCTACTACTACTACTACTTAAGCAACACAAACACAACACGACGACTACCCAAAACGACAACAAATAGCATATTTAAGAGTAGGTGATACACATACACTCAAACACGGGCACGTAAAAGGTGTAAAAAATGGTAAAGCAACTGCACGATATCACGACACAATATACTAATATTCAGCGTGTGCAAGTATGGAATGATGGTGTCTCGCTCAAGACCCAGTTCGATGTTAGTTGATGAGCCTTCCAATAACAACAAAAACAACAACCAAAAGAAATGGAAAAATGGGGCACTCACGGGGGATAAGTGTGTAGGCATATATGGTTTTTAATTACTCACATTCACTTAAGTCACCAGAACGAAAAAAAAAACTGCATTTTGTGTGCAATTTTGCGCTTCCAATTCCAACTGTAA]
consensusID : consensus_6366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCTTGCGTGTTACACCAGAACCAAGAGAAAACAAAATCGCGATATTACCGTGTTCAACATGCCATACACAACCATCAATCCATCCAGCAGCAGCAGCAGCAGCAGTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAGTTCAATCGCATTCATCGGACAGGCAGGCAGGCAGGCAGGCCGGACCCATAGCAAGTAACGTCCGATGCTCGTTCGACAACTTAAACAACAGCGTTCAGAACAGCAAGCACAATAATGGTAGACTGATCGCCGCATCCCATCGTGCCGCATGTGTTGTGAGCTCGGTTATTGTCGCTTGATAGTGCTCTGCAATGTACCATTTGGTTGCCTTTTTGTTTGGGGAGTTCTGGTGTAGCTACATCGGCATGGCTTGGTAACAACAAAACAACAATGCAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGTCGAGTAAGCGAGTGAATGACAGAAAGTGCTTAACAAATTACAGACACGAGGCAACCGAATAAACCGAACCGATGATTGTTAAGTGCAACATTCTTCGAGTCTTCAAGAATGATGAAACGCATAGGCATAGGCAGCGGGTAGAATACATTTTAAATATGACG]
[+] EMBL BM603662 [CCGCGGACGCGTGGGCGGACGCGTGGGCTTGCGTGTTACACCAGAACCAAGAGAAAACAAAATCGCGATATTACCGTGTTCAACATGCCATACACAACCATCAATCCATCCAGCAGCAGCAGCAGCAGCAGTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAGTTCAATCGCATTCATCGGACAGGCAGGCAGGCAGGCAGGCCGGACCCATAGCAAGTAACGTCCGATGCTCGTTCGACAACTTAAACAACAGCGTTCAGAACAGCAAGCACAATAATGGTAGACTGATCGCCGCATCCCATCGTGCCGCATGTGTTGTGAGCTCGGTTATTGTCGCTTGATAGTGCTCTGCAATGTACCATTTGGTTGCCTTTTTGTTTGGGGAGTTCTGGTGTAGCTACATCGGCATGGCTTGGTAACAACAAAACAACAATGCAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGTCGAGTAAGCGAGTGAATGACAGAAAGTGCTTAACAAATTACAGACACGAGGCAACCGAATAAACCGAACCGATGATTGTTAAGTGCAACATTCTTCGAGTCTTCAAGAATGATGAAACGCATAGGCATAGGCAGCGGGTAGAATACATTTTAAATATGACG]
consensusID : consensus_6366#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence
[CCGGAAATGTGAAGAGCATCAGACCGGAGTACATTCAAATGCCACATAGAAATTAAATCAAGATAGAAACGACATAACTCTTCAAGCGCTCCAATTTTATCTTACTACTCACCTCAGCACAACAGTGTCTATCTCTTTTCAAGTATATGTAAATTGTCACAGGTGTCGCCATACTTGCACATACTGCTGTGCGCAATTATTCTTGATAAATTACAGAACGTTACTTGCGTGTTACACCAGAACCAAGAGAAAACAAAATCGCGATATTACCGTGTTCAACATGCCATACACAACCATCAATCCATCCAGCAGCAGCAGCAGCAGCAGTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAGTTCAATCGCATTCATCGGACAGGCAGGCAGGCAGGCAGGCCGGACCCATAGCAAGTAACGTCCGATGCTCGTTCGACAACTTAAACAACAGCGTTCAGAACAGCAAGCACAATAATGGTAGACTGATCGCCGCATCCCATCGTGCCGCATGTGTTGTGAGCTCGGTTATTGTCGCTTGATAGTGCTCTGCAATGTACCATTTGGTTGCCTTTTTGTTTGGGG]
[+] EMBL BM644965 [CCGGAAATGTGAAGAGCATCAGACCGGAGTACATTCAAATGCCACATAGAAATTAAATCAAGATAGAAACGACATAACTCTTCAAGCGCTCCAATTTTATCTTACTACTCACCTCAGCACAACAGTGTCTATCTCTTTTCAAGTATATGTAAATTGTCACAGGTGTCGCCATACTTGCACATACTGCTGTGCGCAATTATTCTTGATAAATTACAGAACGTTACTTGCGTGTTACACCAGAACCAAGAGAAAACAAAATCGCGATATTACCGTGTTCAACATGCCATACACAACCATCAATCCATCCAGCAGCAGCAGCAGCAGCAGTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAGTTCAATCGCATTCATCGGACAGGCAGGCAGGCAGGCAGGCCGGACCCATAGCAAGTAACGTCCGATGCTCGTTCGACAACTTAAACAACAGCGTTCAGAACAGCAAGCACAATAATGGTAGACTGATCGCCGCATCCCATCGTGCCGCATGTGTTGTGAGCTCGGTTATTGTCGCTTGATAGTGCTCTGCAATGTACCATTTGGTTGCCTTTTTGTTTGGGG]
[+] EMBL BM624091 [ ccGAAACGACATAACTCTTCAAGCGCTCCAATTTTATCTTACTACTCACCTCACCACAACAGTGTCTATCTCTTTTCAAGTATATGTAAATTGTCACAGGTGTCGCCATACTTGCACATACTGCTGTGCGCAATTATTCTTGATAAATTACAGAACGTTACTTGCGTGTTACACCACAACCAAGAGAAAACAAAATCGCGATATTACCGTGTTCAACATGCCATACACAACCATCAATCCATCCAGCAGCAGCAGCAGCAGCAGTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAGGTCAATCGCATTCATCGGACAGGCAGGCAGGCAGGCAGGCCGGACCCATAGCAAGTAACGTCCGATGCTCGTTCGACAACTTAAACAACAGCGTTCAGAACAGCAAGCACAATAATGGTAGACTGATCGCCGCATCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6366#1 ------------------------------------------------------------
consensus_6366#2 ------------------------------------------------------------
consensus_6366#0 CCGCCCACGCGTCCGGCAACATTCTTCGAGTCTTCAAGAATGATGAAACGCATAGGCATA 60
consensus_6366#1 ------------------------------------------------------------
consensus_6366#2 ------------------------------------------------------------
consensus_6366#0 GGCAGCGGGTAGAATACATTTTAAATATGACGACAATGGCAATAAATGTGAACATAGATA 120
consensus_6366#1 ------------------------------------------------------------
consensus_6366#2 ----------------------CCGGAAATGTGAAGAGCATCAGACCGGAGTACATTCA- 37
consensus_6366#0 AGGATATAAAGAAACGCCTGCCGCAAAACAATAGATCCATTTTGCTCGATTTTCGGTCAC 180
consensus_6366#1 ------------------------------------------------------------
consensus_6366#2 --AATGCCACATAGAAATTAAATCAAGATAGAAACGACATAACTCTTCAAGCGCTCCAAT 95
consensus_6366#0 CTAAAATTGCATAAAAGCTATTATAATGCGCGATTATAACGATACTACTCCAAATTTGAC 240
consensus_6366#1 ------------------------------------------------------------
consensus_6366#2 TTTATCTTACTACTCACCTCAGCACAACAGTGTCTATCTCTTTTCAAGTATATGTAAATT 155
consensus_6366#0 TTTTCATGTACAGTGTTGTGGCTGGAGCGGCACGTACACCTAATTGGGTTGCATATTATC 300
consensus_6366#1 --------------------------------------------CCGCGGACGCGTGGGC 16
consensus_6366#2 GTCACAGGTGTCGCCATACTTGCACATACTGCTGTGCGCAATTATTCTTGATAAATTACA 215
consensus_6366#0 AAGGCTAGAAATGATGTATCTTTGCATAT--CCGACTCTCTGCTTCGATGTGGTTCGATA 358
*
consensus_6366#1 GGACGCGTGGGCT-TGCGTGTTACACCAGAACCAAGAGAAAACAAAATCGCGATATTACC 75
consensus_6366#2 GAACGTT---ACT-TGCGTGTTACACCAGAACCAAGAGAAAACAAAATCGCGATATTACC 271
consensus_6366#0 GCACGTTTGTTTTGTGTTTGGTATTCTGAAGATGAGAAGACATGAAAAGAAGAAAAAATC 418
* *** * ** ** ** * * *** * * *** ** * * *
consensus_6366#1 GTGT---TCAACATGCCATACACAACCATCA--ATCCATCCAGCAGCAGCAGCAGCAGCA 130
consensus_6366#2 GTGT---TCAACATGCCATACACAACCATCA--ATCCATCCAGCAGCAGCAGCAGCAGCA 326
consensus_6366#0 ACGTGTGTCAGAAAACAGCAATTGAACGTCATAACGTATATTGTTCAAACAAAATGTGTG 478
** *** * * * * * *** * ** * * ** * *
consensus_6366#1 GTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAG 190
consensus_6366#2 GTGGCGGTTCAGAAGCCGAACGTTCACCACACGTTCACATTGACGTTTGCTACTGACGAG 386
consensus_6366#0 ATAATAATTAATTCGAAAAATACTCTCAAAACACAAACACCCTCACGTACGTACACGCAC 538
* ** * * ** ** * * ** *** * * * *
consensus_6366#1 TTCAATCGCATTCATCGGACAGGCAGGCAG-GCAGGCAGGCCGGACCCATAGCAAGTA-- 247
consensus_6366#2 TTCAATCGCATTCATCGGACAGGCAGGCAG-GCAGGCAGGCCGGACCCATAGCAAGTA-- 443
consensus_6366#0 TGTACGCACTGCTGCTTGACTCCCGAGCGGCGGGAGTGCAACGGATTGGGCGGAAGTAGG 598
* * * * *** * ** * * * **** * *****
consensus_6366#1 -ACGTCCGATGCTCGTTCGACAACTTAAACAACA-GCGTTCAGAACAGCAAGCACAATAA 305
consensus_6366#2 -ACGTCCGATGCTCGTTCGACAACTTAAACAACA-GCGTTCAGAACAGCAAGCACAATAA 501
consensus_6366#0 AATGACATCTACTACTACTACTACTTAAGCAACACAAACACAACACGACGACTACCCAAA 658
* * * * ** * * ** ****** ***** ** ** * * ** **
consensus_6366#1 TGGTAGACTGATCGCCGCATCCCATCGTGCCGCATGTGTTGTGAGCTCGGTTATTGTCGC 365
consensus_6366#2 TGGTAGACTGATCGCCGCATCCCATCGTGCCGCATGTGTTGTGAGCTCGGTTATTGTCGC 561
consensus_6366#0 ACGACAACAAATAGC-ATATTTAAGAGTAGGTGATACAC-ATACACTCAAACACGGGCAC 716
* ** ** ** ** * ** ** * *** * * * *
consensus_6366#1 TTGATAGTGCTCTGCAATGTACCATTTGGTTGCCTTTTTGTTTGGGGAGTTCTGGTGTAG 425
consensus_6366#2 TTGATAGTGCTCTGCAATGTACCATTTGGTTGCCTTTTTGTTTGGGG------------- 608
consensus_6366#0 GTAAAAGGTGTAAAAAATG-GTAAAGCAACTGCACGATATCACGACACAATATACTAATA 775
* * ** * **** * *** * *
consensus_6366#1 CTACATCGGCATGGCTTGGTAACAACAAAACAACAATGCAAAGAAAGAGAGAGAGAGAGA 485
consensus_6366#2 ------------------------------------------------------------
consensus_6366#0 TTCAGCGTGTGCAAGTATGGAATGATGGTGTCTCGCTCAAGACCCAGTTCGAT---GTTA 832
consensus_6366#1 GAGAGAGAGAGAGGAGAGGTCGAGTAAGCGAGTGAATGACAGAAAGTGCTTAACAAATTA 545
consensus_6366#2 ------------------------------------------------------------
consensus_6366#0 GTTGATGAGCCTTCCAATAACAACAAAAACAACAACCAAAAGAAATGGAAAAATGGGGCA 892
consensus_6366#1 CAGACACGAGGCAACCGAATAAACCGAACCGATGATTGTTAAGTGCA-ACATTCTTCGAG 604
consensus_6366#2 ------------------------------------------------------------
consensus_6366#0 CTCACGGGGGATAAGTGTGTAGGC---ATATATGGTTTTTAATTACTCACATTCACTTAA 949
consensus_6366#1 TCTTCAAGAATGATGAAACGCATAGGCATAGGCAGCGGGTAGAATACATTTTAAATATGA 664
consensus_6366#2 ------------------------------------------------------------
consensus_6366#0 GTCACCAGAACGAAAAAAAAAACTGCATTTTGTGTGCAATTTTGCGC-TTCCAATTCCAA 1008
consensus_6366#1 CG---- 666
consensus_6366#2 ------
consensus_6366#0 CTGTAA 1014
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||