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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6369#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1328 fasta sequence
[GCAGCTACCTATTTATTTCAAGCGTCTCGCGCAACTACACCCTTTCGGCGGCACAAGTTCAACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTTTATCAATCGGACACATTCTGTTGAATGCGTTTTTTTGTTTTGCGTGATTTTCACGATGCACAGCTCCACTGACTTGTCTCGGGTTTTAACTTTACACAGCTGAACCTACTATCGCTCTGTTACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGCCAGCTCTTTTTTCACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAATCCGTTCCATTCGTATGCACCCCGTTCATTTTGATGGGCGATTCTTGCTTGCTCGGAACCGCACCGTTCACCTGCACCGCAGCGGATGTGCTC-GCCTCACTCTTCAGTCCATTGGCACGCTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTTATCGTTCGGCATTGTGCTGCTCGGGCTGCACTGGTGGTGGAGCAGCT-TCTGCCCATCCTTGAGGTAGGAATCGAGCTTACCGACCGCGGCCAGTATCAGCCCCAGGAACGGTGGCGAAGGTTTGAGCGGGCGCGACAGAAACTCGGGATGGAACTGGGTCGCTACGTAGTACACGTGGTCTTT-CAGCTCCATAATTTCCATGCGCTCCTTTTCCGAGTCCGTGCCGACGAAGCGCATGCCGTGCGATTCGAGCTGTGCCACATAGTCCGGGTTCACCTCGTACCGGTGCCGGTGGCGCTCCTCGATCTGCTGCTTGTTGTTGTACAGTTGACGGATTTTGCTGTCGCCCCGGAAAATGGTCGTCCGCTTGCCAAGTCGCATCGTTCCGCCATACACGCCCGTATGATGTTCGGGCATGTCGATCACCAAGGGATGGGGTGTATCCGGGTTCGATTCCGTCGTATGCGCGCCCTCCAATCCAAGCACATTGCGAGCGAATTCAATGACGGCAGCCTGTAAACCGAGACATATGCCGAGCATCGGTTTGCCATTCTCGCGTGCCCACTGACACGCACGAATTTTGCCCTCTAAACCACGCGAACCGAACCCACCAGGTACAATGATACCATGGCTGTTGGTCAGATCGTGCCACGCATCGTAGTACAGGCTGGTGTTTTCTATCTTCGTCTCGCGCTCCAGATTCGACGAATCGATGAACGTCAGGTTCAGCTTGTACCCGGCCGCAATCGATGCGTGCAGCAGCGACTTCATCACGGACGCGTACGAATCCTGCAGCCGTAACCTCGGGGGGAT]
[+] EMBL CNS08RSM [GCAGCTACCTATTTATTTCAAGCGTCTCGCGCAACTACACCCTTTCGGCGGCACAAGTTCAACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTTTATCAATCGGACACATTCTGTTGAATGCGTTTTTTTGTTTTGCGTGATTTTCACGATGCACAGCTCCACTGACTTGTCTCGGGTTTTAACTTTACACAGCTGAACCTACTATCGCTCTGTTACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGCCAGCTCTTTTTTCACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAATCCGTTCCATTCGTATGCACCCCGTTCATTTTGATGGGCGATTCTTGCTTGCTCGGAACCGCACCGTTCACCTGCACCGCAGCGGATGTGCTCGGCCTCACTCTTCAGTCCATTGGCACGCTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTTATCGTTCGGCATTGTGCTGCTCGGGCTTCACTGGCGGTGGAGCA CTGTCTGCCCATCCTTGAGGTAGGAATCGAGCTTACCGACCGCGGCCAGTATCAGCCCCAGGAACGGTGGCGAAGGTTTGAGCGGGCGCGACAGAAACTCGGGATGGAACTGGGTCGCTACGTAGTAGACGTGGTCTTT CAGCTCCATAATTTCCATGCGCTCCTTTTCCGAGTCCGTGCCGACGAAGCGCATGCCGTGCGATTCGAGCTGTGCCACATAGTCCGGGTTCACCTCGTACCGGTGCCGGTGGCGCTCCTCGATCTGCTGCTTGTTGTTGTACAGTTGACGGATTTTGCTGTCGCCCCGGAAAATGGTCGTCCGCTTGCCAAGTCGCATCGTTCCGCCATACACGCCCGTATGAT ]
[+] EMBL CNS08LE0 [ TTTATTTCAAGCGTCTCGCGCAACTACACCCTTTCGGCGGCACAAGTTCAACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTTTATCAATCGGACACATTCTGTTGAATGCGTTTTTTTGTTTTGCGTGATTTTCACGATGCACAGCTCCACTGACTTGTCTTGGGTTTTAACTTTACACAGCTGAACCTACTATCGCTCTGTTACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGCCAGCTCTTTTTTCACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAATCCGTTCCATTCGTATGCACCCCGTTCATTTTGATGGGCGATTCTTGCTTGCTCGGAACCGCACCGTTCACCTGCACCGCAGCGGATGTGCTC GCCTCACTCTTCAGTCCATTGGCACGCTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTTATCGTTCGGCATTGTGCTGCTCGGGTTGCACTTTTGGGGGAGCAGCT TCTGCCCATCCTTGAGGTAGGAATCGAGCTTACCGACCGCGGCCAGTATCAGCCCCAGGAA ]
[-] EMBL BX618060 [ TTGCTTGCTCGGAACCGCACCGTTCACCTGCACCGCAGCGGATGTGCTC GCCTCACTCTTCAGTCCATTGGCACGCTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTTATCGTTCGGCATTGTGCTGGTCGGGCTGCACTGCTGCTGGAGCAGCT TCTGCCCATCCTTAAGGTAGGAATCGAGCTTACCGACCGCGGCCAGTATCAGCCCCAGGAACGGTGGCGAAGGTTTGAGCGGGCGCGACAGATACTCGGGATGGAACTGGGTCGCTACGTAGTACACGTGTTCTTT CAGCTCCATAATTTCCATGCGC ]
[-] EMBL AL932089 [ ACTCGGGATGGAACTGGGTCGCTACGTAGTACACGTGGTCTTTCCAGCTCCATAATTTCCATGCGCTCCTTTTCCGAGTCCGTGCCGACGAAGCGCATGCCGTGCGATTCGAGCTGTGCCACATAGTCCGGGTTCACCTCGTACCGGTGCCGGTGGCGCTCCTCGATCTGCTGCTTGTTGTTGTACAGTTGACGGATTTTGCTGTCGCCCCGGAAAATGGTCGTCCGCTTGCCAAGTCGCATCGTTCCGCCATACACGCCCGTATGATGTTCGGGCATGTCGATCACCAAGGGATGGGGTGTATCCGGGTTCGATTCCGTCGTATGCGCGCCCTCCAATCCAAGCACATTGCGAGCGAATTCAATGACGGCAGCCTGTAAACCGAGACATATGCCGAGCATCGGTTTGCCATTCTCGCGTGCCCACTGACACGCACGAATTTTGCCCTCTAAACCACGCGAACCGAACCCACCAGGTACAATGATACCATGGCTGTTGGTCAGATCGTGCCACGCATCGTAGTACAGGCTGGTGTTTTCTATCTTCGTCTCGCGCTCCAGATTCGACGAATCGATGAACGTCAGGTTCAGCTTGTACCCGGCCGCAATCGATGCGTGCAGCAGCGACTTCATCACGGACGCGTACGAATCCTGCAGCCGTAACCTCGGGGGGAT]
consensusID : consensus_6369#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence
[GCTCTATTTATTTCAAGCGTCTCACCCTTTCNGCGGCACAAGTTTAACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTTTATCAATCGGACACATTCTGTTGAATGCGCTTTTTTGTTTTGCGTGATTTTCNTGATGCACAGCTCCACTGACTTGTCTTGGGTTTTAACTTTACACAGCTGAACCTACTATCGCACTTTTACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGNCAGCTCTTTTTTTACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAATCCGTTCCATTCGTATGCACCCCGTTCNATTTTGATGGGCGATTCTTGCTTGCTCGGAACCGCACCGTTCACCTGCACCGCAGCGGATGTGCTCGCCTCACTCTTCAGTCCATTGGCACGCTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTT]
[-] EMBL BX620765 [GCTCTATTTATTTCAAGCGTCTCACCCTTTCNGCGGCACAAGTTTAACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTTTATCAATCGGACACATTCTGTTGAATGCGCTTTTTTGTTTTGCGTGATTTTCNTGATGCACAGCTCCACTGACTTGTCTTGGGTTTTAACTTTACACAGCTGAACCTACTATCGCACTTTTACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGNCAGCTCTTTTTTTACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAATCCGTTCCATTCGTATGCACCCCGTTCNATTTTGATGGGCGATTCTTGCTTGCTCGGAACCGCACCGTTCACCTGCACCGCAGCGGATGTGCTCGCCTCACTCTTCAGTCCATTGGCACGCTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6369#0 GCAGCTACCTATTTATTTCAAGCGTCTCGCGCAACTACACCCTTTCGGCGGCACAAGTTC 60
consensus_6369#1 ---GCT--CTATTTATTTCAAGCGTCTC----------ACCCTTTCNGCGGCACAAGTTT 45
*** ******************** ******** ************
consensus_6369#0 AACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTT 120
consensus_6369#1 AACTGTTTTAACTGTTCAATCGGTAAGAAATTGTATATAATTCTAGAAATTGGATTTCTT 105
************************************************************
consensus_6369#0 TATCAATCGGACACATTCTGTTGAATGCGTTTTTTTGTTTTGCGTGATTTTCACGATGCA 180
consensus_6369#1 TATCAATCGGACACATTCTGTTGAATGCGCTTTTTTGTTTTGCGTGATTTTCNTGATGCA 165
***************************** ********************** ******
consensus_6369#0 CAGCTCCACTGACTTGTCTCGGGTTTTAACTTTACACAGCTGAACCTACTATCGCTCTGT 240
consensus_6369#1 CAGCTCCACTGACTTGTCTTGGGTTTTAACTTTACACAGCTGAACCTACTATCGCACTTT 225
******************* *********************************** ** *
consensus_6369#0 TACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGCCAGCTCTTTTTTC 300
consensus_6369#1 TACGCTTTGCAGTTGGAAGAATTGGGTAGCTGTCTCAACCATTCTGNCAGCTCTTTTTTT 285
********************************************** ************
consensus_6369#0 ACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAA 360
consensus_6369#1 ACCGAAAAACCTTATCGTTGCAATACTTACCTTTTAACCGGCGATGCTTCCCCGCTTTAA 345
************************************************************
consensus_6369#0 TCCGTTCCATTCGTATGCACCCCGTTCA-TTTTGATGGGCGATTCTTGCTTGCTCGGAAC 419
consensus_6369#1 TCCGTTCCATTCGTATGCACCCCGTTCNATTTTGATGGGCGATTCTTGCTTGCTCGGAAC 405
*************************** *******************************
consensus_6369#0 CGCACCGTTCACCTGCACCGCAGCGGATGTGCTCGCCTCACTCTTCAGTCCATTGGCACG 479
consensus_6369#1 CGCACCGTTCACCTGCACCGCAGCGGATGTGCTCGCCTCACTCTTCAGTCCATTGGCACG 465
************************************************************
consensus_6369#0 CTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTTATCGTTCGGCATTGTGCTGCTCGG 539
consensus_6369#1 CTCGCGGATCTGATTAAGCTCCTGCGCGTTCACCTT------------------------ 501
************************************
consensus_6369#0 GCTGCACTGGTGGTGGAGCAGCTTCTGCCCATCCTTGAGGTAGGAATCGAGCTTACCGAC 599
consensus_6369#1 ------------------------------------------------------------
consensus_6369#0 CGCGGCCAGTATCAGCCCCAGGAACGGTGGCGAAGGTTTGAGCGGGCGCGACAGAAACTC 659
consensus_6369#1 ------------------------------------------------------------
consensus_6369#0 GGGATGGAACTGGGTCGCTACGTAGTACACGTGGTCTTTCAGCTCCATAATTTCCATGCG 719
consensus_6369#1 ------------------------------------------------------------
consensus_6369#0 CTCCTTTTCCGAGTCCGTGCCGACGAAGCGCATGCCGTGCGATTCGAGCTGTGCCACATA 779
consensus_6369#1 ------------------------------------------------------------
consensus_6369#0 GTCCGGGTTCACCTCGTACCGGTGCCGGTGGCGCTCCTCGATCTGCTGCTTGTTGTTGTA 839
consensus_6369#1 ------------------------------------------------------------
consensus_6369#0 CAGTTGACGGATTTTGCTGTCGCCCCGGAAAATGGTCGTCCGCTTGCCAAGTCGCATCGT 899
consensus_6369#1 ------------------------------------------------------------
consensus_6369#0 TCCGCCATACACGCCCGTATGATGTTCGGGCATGTCGATCACCAAGGGATGGGGTGTATC 959
consensus_6369#1 ------------------------------------------------------------
consensus_6369#0 CGGGTTCGATTCCGTCGTATGCGCGCCCTCCAATCCAAGCACATTGCGAGCGAATTCAAT 1019
consensus_6369#1 ------------------------------------------------------------
consensus_6369#0 GACGGCAGCCTGTAAACCGAGACATATGCCGAGCATCGGTTTGCCATTCTCGCGTGCCCA 1079
consensus_6369#1 ------------------------------------------------------------
consensus_6369#0 CTGACACGCACGAATTTTGCCCTCTAAACCACGCGAACCGAACCCACCAGGTACAATGAT 1139
consensus_6369#1 ------------------------------------------------------------
consensus_6369#0 ACCATGGCTGTTGGTCAGATCGTGCCACGCATCGTAGTACAGGCTGGTGTTTTCTATCTT 1199
consensus_6369#1 ------------------------------------------------------------
consensus_6369#0 CGTCTCGCGCTCCAGATTCGACGAATCGATGAACGTCAGGTTCAGCTTGTACCCGGCCGC 1259
consensus_6369#1 ------------------------------------------------------------
consensus_6369#0 AATCGATGCGTGCAGCAGCGACTTCATCACGGACGCGTACGAATCCTGCAGCCGTAACCT 1319
consensus_6369#1 ------------------------------------------------------------
consensus_6369#0 CGGGGGGAT 1328
consensus_6369#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||