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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6375#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 641 fasta sequence
[ACTCCCTCCCCCCTATCTGTGAGGCTCGAATTGTGATGATCGTATCGAAAAGTGTCTAAGTGTGTGTGTGAGTATCTTTAGATCATTCCTCTAAATTACCCTCCATTCGCGAGAGCACCTTTCTTCCCCCACGTGTCCCGTTGACAAAGTATTTGTTTTGCGGTGTGTTATGCTTCTTATGCAGCAAACAAACACAACACACTCCGTTTGTGTACTTATCTTTGCCAAACTGAGCCAGCAATTGTCACATAAGCCGCTGCCTCCGCCGCCGCCGCATTGCCGTAGATTGCGTTTGTTGTACAGTTAATCGTTTAAAGGGATACTACTTCTCCTACCACACCCTACCCTACCACGCACCATTTGCCACCATCAACTCGTTGGTTCTATTTTGATCTCTTTTATCGTGCTACTTGTGGTTTATGTGATCAGTATGTGTATGTGTGTGTGCGTGTGTGAGTGTTTGTAAAGAGACGGCCGTTATGGATGCCGTGTTAGGCGCGGTTATGGATTTCTGTTTTCCACGCCGGCTCACCTCAATCCCATTTTGTGTGGGCACTAGCCAACTATATTTGCTCGCAGCCGTAAATTGTGTATAGCTACGTTATTTTAATATCCATATNAAACGATCTGTATAGCAGTTT]
[+] EMBL BX626568 [ACTCCCTCCCCCCTATCTGTGAGGCTCGAATTGTGATGATCGTATCGAAAAGTGTCTAAGTGTGTGTGTGAGTATCTTTAGATCATTCCTCTAAATTACCCTCCATTCGCGAGAGCACCTTTCTTCCCCCACGTGTCCCGTTGACAAAGTATTTGTTTTGCGGTGTGTTATGCTTCTTATGCAGCAAACAAACACAACACACTCCGTTTGTGTACTTATCTTTGCCAAACTGAGCCAGCAATTGTCACATAAGCCGCTGCCTCCGCCGCCGCCGCATTGCCGTAGATTGCGTTTGTTGTACAGTTAATCGTTTAAAGGGATACTACTTCTCCTACCACACCCTACCCTACCACGCACCATTTGCCACCATCAACTCGTTGGTTCTATTTTGATCTCTTTTATCGTGCTACTTGTGGTTTATGTGATCAGTATGTGTATGTGTGTGTGCGTGTGTGAGTGTTTGTAAAGAGACGGCCGTTATGGATGCCGTGTTAGGCGCGGTTATGGATTTCTGTTTTCCACGCCGGCTCACCTCAATCCCATTTTGTGTGGGCACTAGCCAACTATATTTGCTCGCAGCCGTAAATTGTGTATAGCTACGTTATTTTAATATCCATATNAAACGATCTGTATAGCAGTTT]
[+] EMBL AGA280440 [ nATTGCGTTTGTTGTACAGTTAATCGTTTAAAGGGATACTACTTCTCCTACCACACCCTACCCTACCACGCACCATTTGCCACCATCAACTCGTTGGTTCTATTTTGATCTCTTTTATC ]
[-] EMBL AGA282144 [ TTGTTGTACAGTTAATCGTTTAAAGGGATACTACTTCTCCTACCACACCCTACCCTACCACGCACCATTTGCCACCATCAAGTCGTTGGTTCTATTTTGATC ]
[-] EMBL AGA282133 [ TTGTACAGTTAATCGTTTAAAGGGATACTACTTCTCCTACCACACCCTACCCTACCACGCACCATTTGCCACCATCAAGTCGTTGGTTCTATTTTGATC ]
consensusID : consensus_6375#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence
[TTCTATTTTGATCTCTTTTATCGTGCTACTTGTGGTTTATGTGATCAGTATGTGTATGTGTGTGAATGTTTGTAAAAAGACGGCCGTTATGGATGCCGTGTTAGGCGCGGTATGGATTTCTGTTTTCCACGCCGGCTCACCTCACCCCATTTTGTGTGGGCACTAGCCAACTATATTTGCTCGCAGCCGTAAATTGTGTATAGCTACGTTATTTTAATATCCATATTAAACGATCTGTATAGCAGTTTTATGTTAATGTTATTCGGGGACAAGCACAACCGAAGCTTATCGATATGTAGAAGTAAACACGATCTATACTGCTGCTGCTGCTGCTATTACTGTAGTACACAGGGAGAGCAGCGGTTATTAGAAGTAAGCGAATGTGTTTTAAAACTATAAAACAAGCTAAAAGGTCCA]
[-] EMBL BM578360 [TTCTATTTTGATCTCTTTTATCGTGCTACTTGTGGTTTATGTGATCAGTATGTGTATGTGTGTGAATGTTTGTAAAAAGACGGCCGTTATGGATGCCGTGTTAGGCGCGGTATGGATTTCTGTTTTCCACGCCGGCTCACCTCACCCCATTTTGTGTGGGCACTAGCCAACTATATTTGCTCGCAGCCGTAAATTGTGTATAGCTACGTTATTTTAATATCCATATTAAACGATCTGTATAGCAGTTTTATGTTAATGTTATTCGGGGACAAGCACAACCGAAGCTTATCGATATGTAGAAGTAAACACGATCTATACTGCTGCTGCTGCTGCTATTACTGTAGTACACAGGGAGAGCAGCGGTTATTAGAAGTAAGCGAATGTGTTTTAAAACTATAAAACAAGCTAAAAGGTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6375#0 ACTCCCTCCCCCCTATCTGTGAGGCTCGAATTGTGATGATCGTATCGAAAAGTGTCTAAG 60
consensus_6375#1 ------------------------------------------------------------
consensus_6375#0 TGTGTGTGTGAGTATCTTTAGATCATTCCTCTAAATTACCCTCCATTCGCGAGAGCACCT 120
consensus_6375#1 ------------------------------------------------------------
consensus_6375#0 TTCTTCCCCCACGTGTCCCGTTGACAAAGTATTTGTTTTGCGGTGTGTTATGCTTCTTAT 180
consensus_6375#1 ------------------------------------------------------------
consensus_6375#0 GCAGCAAACAAACACAACACACTCCGTTTGTGTACTTATCTTTGCCAAACTGAGCCAGCA 240
consensus_6375#1 ------------------------------------------------------------
consensus_6375#0 ATTGTCACATAAGCCGCTGCCTCCGCCGCCGCCGCATTGCCGTAGATTGCGTTTGTTGTA 300
consensus_6375#1 ------------------------------------------------------------
consensus_6375#0 CAGTTAATCGTTTAAAGGGATACTACTTCTCCTACCACACCCTACCCTACCACGCACCAT 360
consensus_6375#1 ------------------------------------------------------------
consensus_6375#0 TTGCCACCATCAACTCGTTGGTTCTATTTTGATCTCTTTTATCGTGCTACTTGTGGTTTA 420
consensus_6375#1 ---------------------TTCTATTTTGATCTCTTTTATCGTGCTACTTGTGGTTTA 39
***************************************
consensus_6375#0 TGTGATCAGTATGTGTATGTGTGTGTGCGTGTGTGAGTGTTTGTAAAGAGACGGCCGTTA 480
consensus_6375#1 TGTGATCAGTATGTGTATGT----------GTGTGAATGTTTGTAAAAAGACGGCCGTTA 89
******************** ****** ********** ************
consensus_6375#0 TGGATGCCGTGTTAGGCGCGGTTATGGATTTCTGTTTTCCACGCCGGCTCACCTCAATCC 540
consensus_6375#1 TGGATGCCGTGTTAGGCGCGGT-ATGGATTTCTGTTTTCCACGCCGGCTCACCTCA-CCC 147
********************** ********************************* **
consensus_6375#0 CATTTTGTGTGGGCACTAGCCAACTATATTTGCTCGCAGCCGTAAATTGTGTATAGCTAC 600
consensus_6375#1 CATTTTGTGTGGGCACTAGCCAACTATATTTGCTCGCAGCCGTAAATTGTGTATAGCTAC 207
************************************************************
consensus_6375#0 GTTATTTTAATATCCATATNAAACGATCTGTATAGCAGTTT------------------- 641
consensus_6375#1 GTTATTTTAATATCCATATTAAACGATCTGTATAGCAGTTTTATGTTAATGTTATTCGGG 267
******************* *********************
consensus_6375#0 ------------------------------------------------------------
consensus_6375#1 GACAAGCACAACCGAAGCTTATCGATATGTAGAAGTAAACACGATCTATACTGCTGCTGC 327
consensus_6375#0 ------------------------------------------------------------
consensus_6375#1 TGCTGCTATTACTGTAGTACACAGGGAGAGCAGCGGTTATTAGAAGTAAGCGAATGTGTT 387
consensus_6375#0 ------------------------------
consensus_6375#1 TTAAAACTATAAAACAAGCTAAAAGGTCCA 417
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||