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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1221 fasta sequence
[ATTCTATGGAACGTGTGTGATGTCGGACTAACCGCATCCACGCGTAATGAGAATGCGTTATGGATGAATGTGTTGTTGAAATCGACGAGTGTCGTTTCATGTGGCATTTTGTGACCTAATACTGCGGACACCTTCTCCGACTGCAGTTTCCGCCGGGACTGTTCAACAAACTACAGCGATCGCCATCATCTCAAATCCAGAATACGTACCGTCGGTCGATCGGTCGAGACCACTGGCAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCGTTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGAACGAGCTGCACATGCCACTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCTGGTTCTTGCGCAGTATGTACTCCCGTCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCACTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCTCACGTTCCTTTTGCAGTTCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTAGACTAAATTGAACATGGCGTGCCTTCCGCGTTCCCAACAGCTGCTGCTGATCGGTCAGGCTCAAATTCTCGCGGGACAATGATTTCACTAATATGCCGCGCAGCACA-GCGAGCGTCGTGCTCGGAATACGATCACTTTCATCGGTCAACATGATGGCGCTTGAGTGCACTGATTCATTGAAACTGTCATCGTCGATCAAACCCATTACCAGCAGGCAAGGGGACACACCGGGTCACAAGCACTTGTATCGAACTCGTTCCGTGCCGCAATCTTTGCCTTCGACAGAAAATAAAAGAAACACGCGCGCGCTCGCGTTCGATCTATCGCGGTTCAACCTTCGTTCGACTCCGTTCGAATTGCACTGAAAAAGGGCGACCCCCAGAGCACTGACGGAACGCGCGCAACACCACCTCGTACCGGGAGCCGG]
[+] EMBL CNS09APO [ATTCTATGGAACGTGTGTGATGTCGGACTAACCGCATCCACGCGTAATGAGAATGCGTTATGGATGAATGTGTTGTTGAAATCGACGAGTGTCGTTTCATGTGGCATTTTGTGACCTAATACTGCGGACACCTTCTCCGACTGCAGTTTCCGCCGGGACTGTTCAACAAACTACAGCGATCGCCATCATCTCAAATCCAGAATACGTACCGTCGGTCGATCGGTCGAGACCACTGGCAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCGTTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGAACGAGCTGCACATGCCACTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCTGGTTCTTGCGCAGTATGTACTCCCGTCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCACTTTCCCGCCTCCGCA GTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCTCACGTTCCTTTTGCAGTTCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTAGACTAAATTGAACATGGCGTGCCTTCCGCGTTCCCAACAGCTGCTGCTGATCGGTCAGGCTCAAATTCTCGCGGGACAATGATTTCACTAATATGCCGCGCA CACAGGCGAGCGTCGTGCTCGGAATACGATCACTTTCATCGGTCAACATGATGGCGCTTGAGTTCACTTATTCATTGAAA ]
[-] EMBL CNS09APN [ GATCGGTCGAGACCACTGGCAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCGTTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGAACGAGCTGCACATGCCACTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCTGGTTCTTGCGCAGTATGTACTCCCGTCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCT TGACCGTCGGTCACTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCTCACGTTCCTTTTGCAGTTCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTAGACTAAATTGAACATGGCGTGCCTTCCGCGTTCCCAACAGCTGCTGCTGATCGGTCAGGCTCAAATTCTCGCGGGACAATGATTTCACTAATATGCCGCGCAGCACA GCGAGCGTCGTGCTCGGAATACGATCACTTTCATCGGTCAACATGATGGCGCTTGAGTGCACTGATTCA ]
[-] EMBL BM633642 [ CCTAGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCACTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCTCACGTTCCTTTTGCAGTTCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTAGACTAAATTGAACATGGCGTGCCTTCCGCGTTCCCAACAGCTGCTGCTGATCGGTCAGGCTCAAATTCTCGCGGGACAATGATTTCACTAATATGCCGCGCAGCACA GCGAGCGTCGTGCTCGGAATACGATCACTTTCATCGGTCAACATGATGGCGCTTGAGTGCACTGATTCATTGAAACTGTCATCGTCGATCAAACCCATTACCAGCAGGCAAGGGGACACACCGGGTCACAAGCACTTGTATCGAACTCGTTCCGTGCCGCAATCTTTGCCTTCGACAGAAAATAAAAGAAACACGCGCGCGCTCGCGTTCGATCTATCGCGGTTCAACCTTCGTTCGACTCCGTTCGAATTGCACTGAAAAAGGGCGACCCCCAGAGCACTGACGGAACGCGCGCAACACCACCTCGTACCGGGAGCCGG]
consensusID : consensus_6389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[CGCGCTGATGTGCTCGCCGTTGCGTCGTCGTGGTTGCGCCAGCTGATCCAAGCGTGTCATCGAGAACGCTCGGCCTGGTGTTCTGGGAGTGTGTGTACCGAGAGACGATCTAGAGCTATCACGAGGACTAGGAATGGTAGGCATTAGATCGGTCTTTCGACGATTGACAGTGCGCTGATAGTTCATTTCTGCTGTATCGTCGTCGGTCGATCGGTCGAGACCACTGGCAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCGTTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGAACGAGCTGCACATGCCGCTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCACGCTCCTGGTTCTTGCGCAGTATGTACTCCCGCCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCGCTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGCCCACGCGTCCGCGG]
[-] EMBL BM581267 [CGCGCTGATGTGCTCGCCGTTGCGTCGTCGTGGTTGCGCCAGCTGATCCAAGCGTGTCATCGAGAACGCTCGGCCTGGTGTTCTGGGAGTGTGTGTACCGAGAGACGATCTAGAGCTATCACGAGGACTAGGAATGGTAGGCATTAGATCGGTCTTTCGACGATTGACAGTGCGCTGATAGTTCATTTCTGCTGTATCGTCGTCGGTCGATCGGTCGAGACCACTGGCAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCGTTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGAACGAGCTGCACATGCCGCTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCACGCTCCTGGTTCTTGCGCAGTATGTACTCCCGCCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCGCTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGCCCACGCGTCCGCGG]
consensusID : consensus_6389#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence
[TCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCTGGTTCTTGCGCAGTATGTACTCCCGCCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCGCTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCTCACGTTCCTTTTGCAGTTCTTCTGTGTTTCTACCATTATCGACGCTATCATCGCCGACGCAAGCAAACCAGTGAAGAGTGTGCGCAACGGACTGTTCGTGCAGTCGATCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTTCTATTGTACCTGGTGACTGCGTTTTGTTGTCAAGAATTTGGTTAATTTCTTCCGTAGAATCCGCCATGTTGATGCAGGAGAGGGGAGGAGAGCCGTGGGGATGTAGCTGAATCGTTTGTCTTGTTTCGGTCTCGACTCGACCGG]
[-] EMBL BM624179 [TCCGCGGTGTCGACGATCCGAAAGCGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCTGGTTCTTGCGCAGTATGTACTCCCGCCGCTCGTTATCGGCCTCGATGATGGCCCGGCGACGCTCCTCGACCTGTGACCGTCGGTCGCTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGCGTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCTCCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCTCACGTTCCTTTTGCAGTTCTTCTGTGTTTCTACCATTATCGACGCTATCATCGCCGACGCAAGCAAACCAGTGAAGAGTGTGCGCAACGGACTGTTCGTGCAGTCGATCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTTCTATTGTACCTGGTGACTGCGTTTTGTTGTCAAGAATTTGGTTAATTTCTTCCGTAGAATCCGCCATGTTGATGCAGGAGAGGGGAGGAGAGCCGTGGGGATGTAGCTGAATCGTTTGTCTTGTTTCGGTCTCGACTCGACCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6389#0 -ATTCTATGGAACGTGT-GTGATGTCGGACTAACCGCATCCACGCGTAATGAGAATGCGT 58
consensus_6389#1 CGCGCTGATGTGCTCGCCGTTGCGTCGTCGTGGTTGCGCCAGC---TGATCCAAGCGTGT 57
consensus_6389#2 ------------------------------------------------------------
consensus_6389#0 TATGGATGA-ATGTGTTGTTGAAATCGACGAGTGT-CGTTTCATGTGGCATTTTGTGACC 116
consensus_6389#1 CATCGAGAACGCTCGGCCTGGTGTTCTGGGAGTGTGTGTACCGAGAGACGATCTA-GAGC 116
consensus_6389#2 ------------------------------------------------------------
consensus_6389#0 TAATACTGCGGACACCTTCTCCGACTGCAGTTTCCGCCGGGACTGTTCAACAAACTACAG 176
consensus_6389#1 TATCAC-GAGGAC-----TAGGAATGGTAGGCATTAGATCGGTCTTTCGACGATTGACAG 170
consensus_6389#2 ------------------------------------------------------------
consensus_6389#0 CGATCGCCATCATCTCAAATCCAGAATACGTACCGTCGGTCGATCGGTCGAGACCACTGG 236
consensus_6389#1 TG--CGCTGATAGTTCATTTCTGCTGTAT-CGTCGTCGGTCGATCGGTCGAGACCACTGG 227
consensus_6389#2 ------------------------------------------------------------
consensus_6389#0 CAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCG 296
consensus_6389#1 CAGAGGTAGCTCGTTTCTTCGACGCACTGTCGGTTAGTTCGCGCTCGGAACTACGCCTCG 287
consensus_6389#2 ------------------------------------------------------------
consensus_6389#0 TTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGA 356
consensus_6389#1 TTAATGCCGCCCCTGTATACGCTACGTTCGTAATGGATGTGGCTCTCCTATGAGCCCAGA 347
consensus_6389#2 ------------------------------------------------------------
consensus_6389#0 ACGAGCTGCACATGCCACTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAG 416
consensus_6389#1 ACGAGCTGCACATGCCGCTGTCACTGGTATCGATCATCCGCGGTGTCGACGATCCGAAAG 407
consensus_6389#2 ------------------------------------TCCGCGGTGTCGACGATCCGAAAG 24
************************
consensus_6389#0 CGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCT 476
consensus_6389#1 CGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCACGCTCCT 467
consensus_6389#2 CGAACTGGATCGAGCCTCGATCGTTGCGTCGTTTCGTCTCCATGCGCTGATCCCGCTCCT 84
**************************************************** *******
consensus_6389#0 GGTTCTTGCGCAGTATGTACTCCCGTCGCTCGTTATCGGCCTCGATGATGGCCCGGCGAC 536
consensus_6389#1 GGTTCTTGCGCAGTATGTACTCCCGCCGCTCGTTATCGGCCTCGATGATGGCCCGGCGAC 527
consensus_6389#2 GGTTCTTGCGCAGTATGTACTCCCGCCGCTCGTTATCGGCCTCGATGATGGCCCGGCGAC 144
************************* **********************************
consensus_6389#0 GCTCCTCGACCTGTGACCGTCGGTCACTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGC 596
consensus_6389#1 GCTCCTCGACCTGTGACCGTCGGTCGCTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGC 587
consensus_6389#2 GCTCCTCGACCTGTGACCGTCGGTCGCTTTCCCGCCTCCGCAGGTCGTCCATCCGGCGGC 204
************************* **********************************
consensus_6389#0 GTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCT 656
consensus_6389#1 GTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCT 647
consensus_6389#2 GTCGTTCTTCCTCCTTCTGCTCGCGGAACTTTTGCGCCGCTAGTGCTTGTGCCTTCAGCT 264
************************************************************
consensus_6389#0 CCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCT 716
consensus_6389#1 CCTCGAGCTTCTTCTGCCGCTCCTCGCCCACGCGTCCGCGG------------------- 688
consensus_6389#2 CCTCGAGCTTCTTCTGCCGCTCCTCGTTCTGTCGTTCCTTCATCTGTTTTATTCGTTCCT 324
************************** * *** *
consensus_6389#0 CACGTTCCTTTTGCAGTTCTCTATTGGCTGAAGACGGCCTTGACTGTTTTTGTACGGTCG 776
consensus_6389#1 ------------------------------------------------------------
consensus_6389#2 CACGTTCCTTTTGCAGTTCTTCTGTGTTTCTAC-CATTATCGACGCTATCATCGCCGACG 383
consensus_6389#0 CATCTCTGTTTCCAGCTAGACTAAATTGAACATGGCGTGCCTTCCGCGTTCCCAACAGCT 836
consensus_6389#1 ------------------------------------------------------------
consensus_6389#2 CAAGCAAACCAGTGAAGAGTGTGCGCAACGGACTGTTCGTGCAGTCGATCTCTATTGGCT 443
consensus_6389#0 GCTGCTGATCGGTCAGGCTCAAATTCTCGCGGGACAATGATTTCA-CTAATATGCCGCGC 895
consensus_6389#1 ------------------------------------------------------------
consensus_6389#2 GAAGACGGCCTTGACTGTTTTTGTACGGTCGCATCTCTGTTTCCAGCTTCTATTGTACCT 503
consensus_6389#0 AGCACAGCGAGCGTCGTGCTCGGAATACGATCACTTTCATCGGTCAACATGATGGCGCTT 955
consensus_6389#1 ------------------------------------------------------------
consensus_6389#2 GGTGACTGCGTTTTGTTGTCAAGAATTTGGTTAATTTCTTCCGTAGAATCCGCCATGTTG 563
consensus_6389#0 GAGTGCACTGATTCATTGAAACTGTCATCGTCGATCAAACCCATTACCAGCAGGCAAGGG 1015
consensus_6389#1 ------------------------------------------------------------
consensus_6389#2 ATGCAGGAGAGGGGAGGAGAGCCGTGGGGATGTAGCTGAATCGTTTGTCTTGTTTCGGTC 623
consensus_6389#0 GACACACCGGGTCACAAGCACTTGTATCGAACTCGTTCCGTGCCGCAATCTTTGCCTTCG 1075
consensus_6389#1 ------------------------------------------------------------
consensus_6389#2 TCGACTCGACCGG----------------------------------------------- 636
consensus_6389#0 ACAGAAAATAAAAGAAACACGCGCGCGCTCGCGTTCGATCTATCGCGGTTCAACCTTCGT 1135
consensus_6389#1 ------------------------------------------------------------
consensus_6389#2 ------------------------------------------------------------
consensus_6389#0 TCGACTCCGTTCGAATTGCACTGAAAAAGGGCGACCCCCAGAGCACTGACGGAACGCGCG 1195
consensus_6389#1 ------------------------------------------------------------
consensus_6389#2 ------------------------------------------------------------
consensus_6389#0 CAACACCACCTCGTACCGGGAGCCGG 1221
consensus_6389#1 --------------------------
consensus_6389#2 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||