cluster # 639

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Anopheles gambiae
cluster # 639 cluster # 639 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_639#0 length = 540 sequences # 1

consensus_639#1 length = 467 sequences # 1

consensusID : consensus_639#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [TCCTCGAGGCAGCCGTAGCACACGTGTTGTGAGAGGACTCCCACGATGGAGGAACGGCTAAGCTCGCTGAATGACGAAGAGCTGAGCACACACGAGCAGCAGATAAAGGAAAAGCTCAGTGTGATCGAGGACAAACTGGCCCGGCTGCGGTCGCAAAAGTCCCACCTGGTGCAGCTGTGCGAAACGATCCAGCAGGTGCGGAAGCAGCGCAAATCGGCGCAACAGTCCGATGGCGACTGGGAGCGGGAAAATTTCCCCTGGTCGACCAAGGCGCGGGACTTGCTCGCGCTCGTATTTTCCATCAAGGACTACCGGCCGAAGCAGCTCGCCACGATAAACGCACTGATGGCCGGGAACGATGTGCTGCTGCTCGCACCGACCGGTGGAGGGAAGAGCCTGTGCTTCCAGCTGCCGGCCCTGCTGAGCGCGGGCCTGACGGTCGTAATCTCCCCGCTCATCTCGCTGATGGANGACCAGGTGTGGTCGCTGGAGCGGTGGAANGTGCGGGCACAGCTGCTGTGCAGCACCACCAGCNANGAG]

[+] EMBL BX627023             [TCCTCGAGGCAGCCGTAGCACACGTGTTGTGAGAGGACTCCCACGATGGAGGAACGGCTAAGCTCGCTGAATGACGAAGAGCTGAGCACACACGAGCAGCAGATAAAGGAAAAGCTCAGTGTGATCGAGGACAAACTGGCCCGGCTGCGGTCGCAAAAGTCCCACCTGGTGCAGCTGTGCGAAACGATCCAGCAGGTGCGGAAGCAGCGCAAATCGGCGCAACAGTCCGATGGCGACTGGGAGCGGGAAAATTTCCCCTGGTCGACCAAGGCGCGGGACTTGCTCGCGCTCGTATTTTCCATCAAGGACTACCGGCCGAAGCAGCTCGCCACGATAAACGCACTGATGGCCGGGAACGATGTGCTGCTGCTCGCACCGACCGGTGGAGGGAAGAGCCTGTGCTTCCAGCTGCCGGCCCTGCTGAGCGCGGGCCTGACGGTCGTAATCTCCCCGCTCATCTCGCTGATGGANGACCAGGTGTGGTCGCTGGAGCGGTGGAANGTGCGGGCACAGCTGCTGTGCAGCACCACCAGCNANGAG]




>consensus_639#0
TCCTCGAGGCAGCCGTAGCACACGTGTTGTGAGAGGACTCCCACGATGGAGGAACGGCTA
AGCTCGCTGAATGACGAAGAGCTGAGCACACACGAGCAGCAGATAAAGGAAAAGCTCAGT
GTGATCGAGGACAAACTGGCCCGGCTGCGGTCGCAAAAGTCCCACCTGGTGCAGCTGTGC
GAAACGATCCAGCAGGTGCGGAAGCAGCGCAAATCGGCGCAACAGTCCGATGGCGACTGG
GAGCGGGAAAATTTCCCCTGGTCGACCAAGGCGCGGGACTTGCTCGCGCTCGTATTTTCC
ATCAAGGACTACCGGCCGAAGCAGCTCGCCACGATAAACGCACTGATGGCCGGGAACGAT
GTGCTGCTGCTCGCACCGACCGGTGGAGGGAAGAGCCTGTGCTTCCAGCTGCCGGCCCTG
CTGAGCGCGGGCCTGACGGTCGTAATCTCCCCGCTCATCTCGCTGATGGANGACCAGGTG
TGGTCGCTGGAGCGGTGGAANGTGCGGGCACAGCTGCTGTGCAGCACCACCAGCNANGAG

consensusID : consensus_639#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [GTTAAGTAAAAAAGTATTCTCCTCGAGGCAGCCGTAGCACACGTGTTGTGAGAGGACTCCCACGATGGAGGAACGGCTAAGCTCGCTGAATGACGAAGAGCTGAGCACACACGAGCAGCTGCACCGGATCGTGGACAAGTGCGAGCTGGAGCAGACGAACCTTACCGGGCTGAAGCTGGTGGACGCCTGGATGCAGAAGGGACCGACGCACGTGCGGCTGAGCGAACCGGCCCCACTGATCGATCGTACCGTAGCGGAGCAGATCGTCGCCTACCTGATCGTGCACAACTATCTGAAGGAATCGTTCGTGTTCACACCGTACGCGACGCACAGCTACATCAATAAGGGTTCGGCGAGGGTTGCGAACAGCACGCTGAAGATCCGCGTCGGCAAGCTGTTTCCGCTCGCGGCGAACAGTGGACCGGCGATCGCGTCGACCAGCAGTGCGGGAAGGAAACGAACGACCA]

[+] EMBL BX614438             [GTTAAGTAAAAAAGTATTCTCCTCGAGGCAGCCGTAGCACACGTGTTGTGAGAGGACTCCCACGATGGAGGAACGGCTAAGCTCGCTGAATGACGAAGAGCTGAGCACACACGAGCAGCTGCACCGGATCGTGGACAAGTGCGAGCTGGAGCAGACGAACCTTACCGGGCTGAAGCTGGTGGACGCCTGGATGCAGAAGGGACCGACGCACGTGCGGCTGAGCGAACCGGCCCCACTGATCGATCGTACCGTAGCGGAGCAGATCGTCGCCTACCTGATCGTGCACAACTATCTGAAGGAATCGTTCGTGTTCACACCGTACGCGACGCACAGCTACATCAATAAGGGTTCGGCGAGGGTTGCGAACAGCACGCTGAAGATCCGCGTCGGCAAGCTGTTTCCGCTCGCGGCGAACAGTGGACCGGCGATCGCGTCGACCAGCAGTGCGGGAAGGAAACGAACGACCA]




>consensus_639#1
GTTAAGTAAAAAAGTATTCTCCTCGAGGCAGCCGTAGCACACGTGTTGTGAGAGGACTCC
CACGATGGAGGAACGGCTAAGCTCGCTGAATGACGAAGAGCTGAGCACACACGAGCAGCT
GCACCGGATCGTGGACAAGTGCGAGCTGGAGCAGACGAACCTTACCGGGCTGAAGCTGGT
GGACGCCTGGATGCAGAAGGGACCGACGCACGTGCGGCTGAGCGAACCGGCCCCACTGAT
CGATCGTACCGTAGCGGAGCAGATCGTCGCCTACCTGATCGTGCACAACTATCTGAAGGA
ATCGTTCGTGTTCACACCGTACGCGACGCACAGCTACATCAATAAGGGTTCGGCGAGGGT
TGCGAACAGCACGCTGAAGATCCGCGTCGGCAAGCTGTTTCCGCTCGCGGCGAACAGTGG
ACCGGCGATCGCGTCGACCAGCAGTGCGGGAAGGAAACGAACGACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_639#0      -------------------TCCTCGAGGCAGCCGTAGCACACGTGTTGTGAGAGGACTCC 41
consensus_639#1      GTTAAGTAAAAAAGTATTCTCCTCGAGGCAGCCGTAGCACACGTGTTGTGAGAGGACTCC 60
                                        *****************************************

consensus_639#0      CACGATGGAGGAACGGCTAAGCTCGCTGAATGACGAAGAGCTGAGCACACACGAGCAGCA 101
consensus_639#1      CACGATGGAGGAACGGCTAAGCTCGCTGAATGACGAAGAGCTGAGCACACACGAGCAGCT 120
                     *********************************************************** 

consensus_639#0      G-ATAAAGGAAAAGCTCAGTGTGATCGAGGACAAACTGGCCCGGCTGCGGTCGCAAAAGT 160
consensus_639#1      GCACCGGATCGTGGACAAGTGCGAGCTGGAGCAGACGAACCTTACCGGGCT----GAAG- 175
                     * *          *   **** ** *  *  ** **   **   * * * *     *** 

consensus_639#0      CCCACCTGGTGCAGCTGTGCGAAACGATCCAGCAGGTGCGGAAGCAGCGCAAATCGGCGC 220
consensus_639#1      -CTGGTGGACGCCTGGATGCAGAAGGGACCGACGCACGTGCG-GCTGAGCGAACCGGCCC 233
                      *     *  **     ***  ** *  **  *    * *   ** * ** ** **** *

consensus_639#0      AACAGTCCGATGGCGACTGGGAGCGGGAAAATTTCCCCTGGTCGACCAAGGCGCGGGACT 280
consensus_639#1      CACTGATCGATCGTACCGTAGCGGAGCAGATCGTCGCCTACCTGATC---GTGCACAACT 290
                      ** *  **** *   *   * *  * * *   ** ***    ** *   * **   ***

consensus_639#0      TGCTCGCGCTCGTATTTTCCATCAAGGACTACCGGCCGAAGCAGCT-CGCCACGATAAAC 339
consensus_639#1      ATCTGAAGGAATCGTTCGTGTTCACACCGTACGCGACGCA-CAGCTACATCAATAAGGGT 349
                       **   *      **     ***     ***  * ** * ***** *  **  *     

consensus_639#0      GCACTGATGGCCGGGAACGATGTGCTGCTGCTCGCACCGACCGGTGGAGGGAAGAGCCTG 399
consensus_639#1      TCGGCGAGGGTTGCGAACAGCACGCTGAAG---------ATCCGCGTCGGCAAG---CTG 397
                      *   ** **  * ****     ****  *         * * * *  ** ***   ***

consensus_639#0      TGCTTCCAGCTGCCGGCCCTGCTGAGCGCGGGCCTGACGGTCGTAATCTCC--CCGCTCA 457
consensus_639#1      T---TTCCGCTCGCGGC------GAACAGTGGACCGGCGATCGCGTCGACCAGCAGTGCG 448
                     *   * * ***  ****      ** *   ** * * ** ***      **  * *  * 

consensus_639#0      TCTCGCTGATGGANGACCAGGTGTGGTCGCTGGAGCGGTGGAANGTGCGGGCACAGCTGC 517
consensus_639#1      GGAAGGAAACGAACGACCA----------------------------------------- 467
                         *   * * * *****                                         

consensus_639#0      TGTGCAGCACCACCAGCNANGAG 540
consensus_639#1      -----------------------