cluster # 6406

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6406 cluster # 6406 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6406#0 length = 882 sequences # 4

consensus_6406#1 length = 611 sequences # 1

consensusID : consensus_6406#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 882
fasta sequence

                              [GCATTGTGGAA-CAAACTAAACAAAACATAAAAAAATAATGTAAATCAGAACGGATCAGGACCGGGAACGTCGCCAGGACTGCGATCGAAATCGATACAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTACCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTATAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCACCGGTATCAGGACGGGCTTC-GGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGATCAGGCCTGGCATCGGGAGCAGGACTGACTTCGGGATCAGGACGGGAACCGCGTAAATATATGCGAGAAGACGTGGAGCTCTGCTTGCGGATGGCTAATGCGGTAGAAAAACAGAACATCATCTACAATAAAAAATCTCCGCATTACAAAAACCGAGACCGTCAAAATGACGCATGGATGTGTGTCGCAGAAGAGGTCGGGTTGACCATGGCAGAGGCCAAAAAAATGTGGCACAACATGTTGGCCAAATATCGGTCATACCGATCCAAAGTGCGCCAGAGCATGTAGACCGGGTCAGGTAAATTGTTTTA-TTTTTTTATTTTTATTCAAGCTAAAAGGCTACAAATAACTTGTTGACTATTTTAGTGTTATGTTTGTAACTTGTACTACTTTATTACACATATTAAAACATGT]

[+] EMBL CNS09ITV             [GCATTGTGGAA CAAACTAAACAAAACATAAAAAAATAATGTAAATCAGAACGGATCAGGACCGGGAACGTCGCCAGGACTGCGATCGAAATCGATACAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTACCGTTATCTGTACTGGCCCCGGCATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTATAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCACCGGTATCAGGACGGGCTTC GGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGATCAGGCCTGGCATCGGGAGCAGGACTGACTTCGGGATCAGGACGGGAACCGCGTAAATATATGCGAGAAGACGTGGAGCTCTGCTTGCGGATGGCTAATGCGGTAGAAAAACAGAACATCATCTACAATAAAAAATCTCCGCATTACAAAAACCGAGACCGTCAAAATGACGCATGGATGTGTGTCGCAGAAGAGGTCGGGTTGACCATGGCAGAGGCCAAAAAAATGTGGCACAACATGTTGGCCAAATATCGGTCATACCGATCCAAAGTGCGCCAGAGCATGTAGACCGGGTCAGGTAAATTGTTTTA TTTTTTTATTTTTATTCAAGCTAAAAGGCTACAAATAACTTGTTGACTATTTTAGTGTTATGTTTGTA                                   ]
[+] EMBL BX626324             [   TTGTGGAACCAAACTAAACAAAACATAAAAAAATAATGTAAATCAGAACGGATCAGGACCGGGAACGTCGTCAGGACTGCGATCGAAATCGATACAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTACCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTATAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCACCGGTATCAGGACGGGCTTC GGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGATCAGGCCTGGCATCGGGAGCAGGACTGACTTCGGGATCAGGACGGGAACCGCGTAAATATATGCGAGAAGACGTGGAGCTCTGCTTGCGGATGGCTAATGCGGTAGAAAAACAGAACATCATCTACAATAAAAAATCTCCGCATTACAAAAACCGAGACCGTCAAAATGACGCATGGAT                                                                                                                                                                                                                                            ]
[+] EMBL BM620527             [                                                                                                                 ccgTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTACCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTATAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCACCGGTATCAGGACGGGCTTC GGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGATCAGGCCTGGCATCGGGAGCAGGACTGACTTCGGGATCAGGACGGGAACCGCGTAAATATATGCGAGAAGACGTGGAGCTCTGCTTGCGGATGGCTAATGCGGTAGAAAAACAGAACATCATCTACAATAAAAAATCTCCGCATTACAAAAACCGAGACCGTCAAAATGACGCATGGATGTGTGTCGCAGAAGAGGTCGGGTTGACCATGGCAGAGGCCAAAAAAATGTGGCACAACATGTTGGCCAAATATCGGTCATACCGATCCAAAGTGCGCCAGAGCATGTAGACCGGGTCAGGAAAATTGTTTTATTTTTTTTATTTTTATTCAAGCTAAAAGGCTACAAATAA                                                                 ]
[-] EMBL CNS09ITW             [                                                                                                                                                                                                                                                                                                                                                            ACGGGCTTCGGGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGATCAGGCCTGGCATCGGGAGCAGGACTGACTTCGGGATCAGGACGGGAACCGCGTAAATATATGCGAGAAGACGTGGAGCTCTGCTTGCGGATGGCTAATGCGGTAGAAAAACAGAACATCATCTACAATAAAAAATCTCCGCATTACAAAAACCGAGACCGTCAAAATGACGCATGGATGTGTGTCGCAGAAGAGGTCGGGTTGACCATGGCAGAGGCCAAAAAAA GGCGCCCCACATGTTGGCCAAATATCGGTCATACCGATCCAAAGTGCGCCAGAGCATGTAGACCGGGTCAGGTAAATTGTTTTA TTTTTTTATTTTTATTCAAGCTAAAAGGCTACAAATAACTTGTTGACTATTTTAGTGTTATGTTTGTAACTTGTACTACTTTATTACACATATTAAAACATGT]




>consensus_6406#0
GCATTGTGGAACAAACTAAACAAAACATAAAAAAATAATGTAAATCAGAACGGATCAGGA
CCGGGAACGTCGCCAGGACTGCGATCGAAATCGATACAGCAATCGTGACCTGGACTAGCA
ACGATATCAGTACTGGCACCGATATCAGGACGGGTACCGTTATCTGTACTGGCACCGGTA
TCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTATAAGGACGGGCTTAGGGAATAGGG
CTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAAGACTGGCA
CCGATTTCAGGACGGGCATCGGGATCAGGACGGGCACCGGTATCAGGACGGGCTTCGGAA
TCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTTCAGGA
CGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGATCAGGCCTGGCA
TCGGGAGCAGGACTGACTTCGGGATCAGGACGGGAACCGCGTAAATATATGCGAGAAGAC
GTGGAGCTCTGCTTGCGGATGGCTAATGCGGTAGAAAAACAGAACATCATCTACAATAAA
AAATCTCCGCATTACAAAAACCGAGACCGTCAAAATGACGCATGGATGTGTGTCGCAGAA
GAGGTCGGGTTGACCATGGCAGAGGCCAAAAAAATGTGGCACAACATGTTGGCCAAATAT
CGGTCATACCGATCCAAAGTGCGCCAGAGCATGTAGACCGGGTCAGGTAAATTGTTTTAT
TTTTTTATTTTTATTCAAGCTAAAAGGCTACAAATAACTTGTTGACTATTTTAGTGTTAT
GTTTGTAACTTGTACTACTTTATTACACATATTAAAACATGT

consensusID : consensus_6406#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [GGCCAGAACCGGCACGTAGGCCGGCATTGTGGAACCAAACTAAACAAAACATAAAAAAATAATGTAAATCAGAACGGATCAGGACCGGGAACGTCGTCAGGACTGCGATCGAAATCGATACAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTACCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTATAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCACCGGTATCAGGACGGGCTTCGGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTGTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGGAATCAAGGNCATGGGCAATCGGGNGGAGGCAAGGACCTGGACGTTNCGGGGGACTCCACGGGACGGGGAAACCCGGCGGTACAGCANTCAGTATTGCCGACGGAAGGAACGATGGAAG]

[+] EMBL BX468329             [GGCCAGAACCGGCACGTAGGCCGGCATTGTGGAACCAAACTAAACAAAACATAAAAAAATAATGTAAATCAGAACGGATCAGGACCGGGAACGTCGTCAGGACTGCGATCGAAATCGATACAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTACCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTATAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCACCGGTATCAGGACGGGCTTCGGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTATCAGGACTGGCACAGATTGTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGGACGGGCTTCGGGGAATCAAGGNCATGGGCAATCGGGNGGAGGCAAGGACCTGGACGTTNCGGGGGACTCCACGGGACGGGGAAACCCGGCGGTACAGCANTCAGTATTGCCGACGGAAGGAACGATGGAAG]




>consensus_6406#1
GGCCAGAACCGGCACGTAGGCCGGCATTGTGGAACCAAACTAAACAAAACATAAAAAAAT
AATGTAAATCAGAACGGATCAGGACCGGGAACGTCGTCAGGACTGCGATCGAAATCGATA
CAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTA
CCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTA
TAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGA
CTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCA
CCGGTATCAGGACGGGCTTCGGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTA
TCAGGACTGGCACAGATTGTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGG
ACGGGCTTCGGGGAATCAAGGNCATGGGCAATCGGGNGGAGGCAAGGACCTGGACGTTNC
GGGGGACTCCACGGGACGGGGAAACCCGGCGGTACAGCANTCAGTATTGCCGACGGAAGG
AACGATGGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6406#0      -----------------------GCATTGTGGAAC-AAACTAAACAAAACATAAAAAAAT 36
consensus_6406#1      GGCCAGAACCGGCACGTAGGCCGGCATTGTGGAACCAAACTAAACAAAACATAAAAAAAT 60
                                             ************ ************************

consensus_6406#0      AATGTAAATCAGAACGGATCAGGACCGGGAACGTCGCCAGGACTGCGATCGAAATCGATA 96
consensus_6406#1      AATGTAAATCAGAACGGATCAGGACCGGGAACGTCGTCAGGACTGCGATCGAAATCGATA 120
                      ************************************ ***********************

consensus_6406#0      CAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTA 156
consensus_6406#1      CAGCAATCGTGACCTGGACTAGCAACGATATCAGTACTGGCACCGATATCAGGACGGGTA 180
                      ************************************************************

consensus_6406#0      CCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTA 216
consensus_6406#1      CCGTTATCTGTACTGGCACCGGTATCAGGACAGGCACCGGCATCAGGAAAGGCACCGGTA 240
                      ************************************************************

consensus_6406#0      TAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGA 276
consensus_6406#1      TAAGGACGGGCTTAGGGAATAGGGCTGGCATCGCGATCAGGCCTGGCATCGGGAGCAGGA 300
                      ************************************************************

consensus_6406#0      CTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCA 336
consensus_6406#1      CTGGCACCGGTATCAAGACTGGCACCGATTTCAGGACGGGCATCGGGATCAGGACGGGCA 360
                      ************************************************************

consensus_6406#0      CCGGTATCAGGACGGGCTTCGGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTA 396
consensus_6406#1      CCGGTATCAGGACGGGCTTCGGAATCAGGCCTGGCATCGGGAGCAGGACTGGCACCGGTA 420
                      ************************************************************

consensus_6406#0      TCAGGACTGGCACAGATT-TCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGG 455
consensus_6406#1      TCAGGACTGGCACAGATTGTCAGGACGGGCATTGGGATCAGGACTGGTATTGGAAGCAGG 480
                      ****************** *****************************************

consensus_6406#0      ACGGGCTTCGGG--ATCAGGCCTGGCATCGGGAGCAGGACTGACTTCGGGATCAGGACGG 513
consensus_6406#1      ACGGGCTTCGGGGAATCAAG---GNCATGGGCAATCGGGNGGAGGCAAGGACCTGGACG- 536
                      ************  **** *   * *** ** *   **   **     *** * ***** 

consensus_6406#0      GAACCGCGTAAATATATGCGAGAAGACGTGGAGCTCTGCTTGCGGATGGCTAATGCGGTA 573
consensus_6406#1      ---TTNCGGGGGACTCCACGGGACG--GGGAAACCCGGCGGTACAGCANTCAGTATTGCC 591
                            **      *   ** ** *  * * * * * **            * *   *  

consensus_6406#0      GAAAAACAGAACATCATCTACAATAAAAAATCTCCGCATTACAAAAACCGAGACCGTCAA 633
consensus_6406#1      GACGGAAGGAACGATGGAAG---------------------------------------- 611
                      **   *  ****                                                

consensus_6406#0      AATGACGCATGGATGTGTGTCGCAGAAGAGGTCGGGTTGACCATGGCAGAGGCCAAAAAA 693
consensus_6406#1      ------------------------------------------------------------
                                                                                  

consensus_6406#0      ATGTGGCACAACATGTTGGCCAAATATCGGTCATACCGATCCAAAGTGCGCCAGAGCATG 753
consensus_6406#1      ------------------------------------------------------------
                                                                                  

consensus_6406#0      TAGACCGGGTCAGGTAAATTGTTTTATTTTTTTATTTTTATTCAAGCTAAAAGGCTACAA 813
consensus_6406#1      ------------------------------------------------------------
                                                                                  

consensus_6406#0      ATAACTTGTTGACTATTTTAGTGTTATGTTTGTAACTTGTACTACTTTATTACACATATT 873
consensus_6406#1      ------------------------------------------------------------
                                                                                  

consensus_6406#0      AAAACATGT 882
consensus_6406#1      ---------