cluster # 6408

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Anopheles gambiae
cluster # 6408 cluster # 6408 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6408#0 length = 615 sequences # 1

consensus_6408#1 length = 579 sequences # 4

consensusID : consensus_6408#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [CTGGAGTAGACTGTGGAAGGCAGTAGTCACAACACGGTCCATAGCAAGGATTGCAAGATGTTCAAGCAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAGGGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCGGGATGCACCAGCCTGCCCTGCCAGGTCCCAAACCAGTCGGACTTTAACTTTAGCGTGCGCTTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGTCTGTTCCTGCCCTACGAGGTACCGGATCATCTGCGCAATGGCTGCAACAACATTAACACTTCCTGTCCGCTGACGGCTGGGCAATCCGTAACGCTGACCGGTACGCACCGGTCGAGGCGCCACTCACGGGCGTCACTGTTACGATGGAGTTCGAAATAACGGGCGATGGTGGACAGGTGGCCGTTTGTTTCGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGGTTACACAAGGGGTAATAAAGCAGATGTTATATCGCATCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATTTTCCCGGGG]

[+] EMBL CNS098TH             [CTGGAGTAGACTGTGGAAGGCAGTAGTCACAACACGGTCCATAGCAAGGATTGCAAGATGTTCAAGCAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAGGGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCGGGATGCACCAGCCTGCCCTGCCAGGTCCCAAACCAGTCGGACTTTAACTTTAGCGTGCGCTTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGTCTGTTCCTGCCCTACGAGGTACCGGATCATCTGCGCAATGGCTGCAACAACATTAACACTTCCTGTCCGCTGACGGCTGGGCAATCCGTAACGCTGACCGGTACGCACCGGTCGAGGCGCCACTCACGGGCGTCACTGTTACGATGGAGTTCGAAATAACGGGCGATGGTGGACAGGTGGCCGTTTGTTTCGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGGTTACACAAGGGGTAATAAAGCAGATGTTATATCGCATCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATTTTCCCGGGG]




>consensus_6408#0
CTGGAGTAGACTGTGGAAGGCAGTAGTCACAACACGGTCCATAGCAAGGATTGCAAGATG
TTCAAGCAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAGGGGTTGGAAATT
ATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCGGGATGCACCAGC
CTGCCCTGCCAGGTCCCAAACCAGTCGGACTTTAACTTTAGCGTGCGCTTCGCACCAACC
TTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGTCTGTTCCTGCCC
TACGAGGTACCGGATCATCTGCGCAATGGCTGCAACAACATTAACACTTCCTGTCCGCTG
ACGGCTGGGCAATCCGTAACGCTGACCGGTACGCACCGGTCGAGGCGCCACTCACGGGCG
TCACTGTTACGATGGAGTTCGAAATAACGGGCGATGGTGGACAGGTGGCCGTTTGTTTCG
CCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGGTTACACAAGGGGT
AATAAAGCAGATGTTATATCGCATCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGC
CACATTTTCCCGGGG

consensusID : consensus_6408#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 579
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGGGCGGTAGTAGTTACAGCACGGTCCATAGCAAGGATTGCAAGATGTTCAAACAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAGGGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCGGGATGCACTAGCCTGCCCTGCCAGGTCCCGAACCAATCGGACTTTAACTTTAGCGTGCGCTTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGTCTGTTCCTGCCCTACGAGGTACCGGAGCATCTTCGCAATGGCTGCAACAACATTAACACTTCCTGTCCGCTGACGGCCGGGCAATCCGTAACGCTGACCGGTACGGCACCGGTCGAGGCTCCGCTCACGGGCGTCACTGTTACGAT-GGAGTTCGAAATAACGGGCGATGGTGGACAGGTGGCCGTTTGTTTTGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGGTTACACAAGGGTAATAAAGCAGATGTTATATCGCATCAT]

[+] EMBL BM590047             [CCGCGGACGCGTGGGCGGACGCGTGGGGGCGGTAGTAGTTACAGCACGGTCCATAGCAAGGATTGCAAGATGTTCAAACAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAGGGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCGGGATGCACTAGCCTGCCCTGCCAGGTCCCGAACCAATCGGACTTTAACTTTAGCGTGCGCTTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGTCTGTTCCTGCCCTACGAGGTACCGGAGCATCTTCGCAATGGCTGCAACAACATTAACACTTCCTGTCCGCTGACGGCCGGGCAATCCGTAACGCTGACCGGTACGGCACCGGTCGAGGCTCCGCTCACGGGCGTCACTGTTACGAT GGAGTTCGAAATAACGGGCGATGGTGGACAGGTGGCCGTTTGTTTTGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGGTTACACAAGGGTAATAAAGCAGATGTTATATCGCATCAT]
[+] EMBL BM637778             [                        ccGGGCGGTAGTAGTTACAGCACGGTCCATAGCAAGGATTGCAAGATGTTCAAACAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAGGGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCGGGATGCACTAGCCTGCCCTGCCAGGTCCCGAACCAATCGGACTTTAACTTTAGCGTGCGCTTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGTCTGTTCCTGCCCTACGAGGTACCGGAGCATCTTCGCAATGGCTGCAACAACATTAACACTTCCTGTCCGCTGACGGCCGGGCAATCCGTAACGCTGACCGGTACGGCACCGGTCGAGGCTCCGCTCACGGGCGTCACTGTTACGATGGGAGTTCGAAATAACGGGCG                                                                                                                 ]
[+] EMBL BM582754             [                                  ccgGTCACAACACGGTCCATAGCAAGAATTGCAAGATGTTCAAGCAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAGGGGTTGGAAATTATTCAGTGTTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCGGGATGCACTAGCCTGCCCTGCCAGGTCCCGAACCAATCGGACTTTAACTTTAGCGTGCGCTTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGTCTGTTCCTGCCGTACGAAGTACCGGAGCATCTACGCAATGGCTGCAACAACATTAACACATCCTGTCCGCTGACGGCCGGGCAATCCGTAACACTGACCGGTACGGCACCGGTCGAGGCTCCGCTCACGGGCGTCACTGTTACGAT GGAGTTCGAAATAACGGGCGATGGTGGACAGGTGGCCGTTTGTTTTGCCGCTACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGGTTACACAAGGATA                          ]
[+] EMBL BM610627             [                                                                                                                                                                                                                                                                                                                                                                                  ccgCGGCCGGGCAATCCGTAACGCTGACCGGTACGGCACCGGTCGAGGCTCCGCTCACGGGCGTCACTGTTACGAT GGAGTTCGAAATAACGGGCGATGGTGGACAGGTGGCCGTTTGTTTTGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGGTTACACAAGGGTAATAAAGCAGATGTTATATCGCATCAT]




>consensus_6408#1
CCGCGGACGCGTGGGCGGACGCGTGGGGGCGGTAGTAGTTACAGCACGGTCCATAGCAAG
GATTGCAAGATGTTCAAACAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAG
GGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCG
GGATGCACTAGCCTGCCCTGCCAGGTCCCGAACCAATCGGACTTTAACTTTAGCGTGCGC
TTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGT
CTGTTCCTGCCCTACGAGGTACCGGAGCATCTTCGCAATGGCTGCAACAACATTAACACT
TCCTGTCCGCTGACGGCCGGGCAATCCGTAACGCTGACCGGTACGGCACCGGTCGAGGCT
CCGCTCACGGGCGTCACTGTTACGATGGAGTTCGAAATAACGGGCGATGGTGGACAGGTG
GCCGTTTGTTTTGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGG
TTACACAAGGGTAATAAAGCAGATGTTATATCGCATCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6408#0      ---------CTGGAGTAGAC---TGTGGAAGGCAGTAGTCACAACACGGTCCATAGCAAG 48
consensus_6408#1      CCGCGGACGCGTGGGCGGACGCGTGGGGGCGGTAGTAGTTACAGCACGGTCCATAGCAAG 60
                               *  * *  ***   ** **  ** ****** *** ****************

consensus_6408#0      GATTGCAAGATGTTCAAGCAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAG 108
consensus_6408#1      GATTGCAAGATGTTCAAACAAGTCGTAGCAGTGGTGCTGTTGTTCGCAGCAGTTGCTCAG 120
                      ***************** ******************************************

consensus_6408#0      GGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCG 168
consensus_6408#1      GGGTTGGAAATTATTCAATGCTCCAATAATCGGCCCACGCCCCAGGAAGTGACCGTGCCG 180
                      ************************************************************

consensus_6408#0      GGATGCACCAGCCTGCCCTGCCAGGTCCCAAACCAGTCGGACTTTAACTTTAGCGTGCGC 228
consensus_6408#1      GGATGCACTAGCCTGCCCTGCCAGGTCCCGAACCAATCGGACTTTAACTTTAGCGTGCGC 240
                      ******** ******************** ***** ************************

consensus_6408#0      TTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGT 288
consensus_6408#1      TTCGCACCAACCTTCCCAACCAACACACTGACGGTGGATGTGCGTGCATCGCTGTTGGGT 300
                      ************************************************************

consensus_6408#0      CTGTTCCTGCCCTACGAGGTACCGGATCATCTGCGCAATGGCTGCAACAACATTAACACT 348
consensus_6408#1      CTGTTCCTGCCCTACGAGGTACCGGAGCATCTTCGCAATGGCTGCAACAACATTAACACT 360
                      ************************** ***** ***************************

consensus_6408#0      TCCTGTCCGCTGACGGCTGGGCAATCCGTAACGCTGACCGGTACG-CACCGGTCGAGGCG 407
consensus_6408#1      TCCTGTCCGCTGACGGCCGGGCAATCCGTAACGCTGACCGGTACGGCACCGGTCGAGGCT 420
                      ***************** *************************** ************* 

consensus_6408#0      CCACTCACGGGCGTCACTGTTACGATGGAGTTCGAAATAACGGGCGATGGTGGACAGGTG 467
consensus_6408#1      CCGCTCACGGGCGTCACTGTTACGATGGAGTTCGAAATAACGGGCGATGGTGGACAGGTG 480
                      ** *********************************************************

consensus_6408#0      GCCGTTTGTTTCGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGG 527
consensus_6408#1      GCCGTTTGTTTTGCCGCCACCGTGACGCTGCTGTAATGCGGGTGGAAGGCGTTACAAAGG 540
                      *********** ************************************************

consensus_6408#0      TTACACAAGGGGTAATAAAGCAGATGTTATATCGCATCATAAAAAAAAAAAAAAAAAAAA 587
consensus_6408#1      TTACACAAGGG-TAATAAAGCAGATGTTATATCGCATCAT-------------------- 579
                      *********** ****************************                    

consensus_6408#0      AAAAAAAAAAGGCCACATTTTCCCGGGG 615
consensus_6408#1      ----------------------------