cluster # 6411

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6411 cluster # 6411 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6411#0 length = 909 sequences # 4

consensus_6411#1 length = 410 sequences # 1

consensusID : consensus_6411#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 909
fasta sequence

                              [CCGCACATATTAGGGCGCAAAGAGAGATTAGGCAGGTGCAACCACGAGTCCCCATCAATGGGTATTGATGGGACAAAAATGAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGGAAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTCTCGTTTTTTTTTCAGTTTTCGTCAAAGCAAAGCATACATATGTTGCTCATATCTACACGTGTATCTTCCGTTTTTTCTTCTTTTTTTCATTCATTTGTTTCATTTAGCATTTAGCTTCACTCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTGTTGCCTTTCAAGCATTTAGTTAGTTGTCCTAAGTTTAGCCTTTAATCTTATATTGTTCCAAATAATACGTAGTCTGAGCAGTGGGTGCGTGTGTATGCGCCTACACTATGATGCAAAATACGCAAGGGTAATGTTAGAGAGTTAGAAGTAAAGAAAACAAACAGAAATTTTTATACCAAATCACGTTAAGAAAAATGAGGAAAAATTATATAGATCTTAAAAAATAGAAATAAATTAAGCGTATCAAGCGCATTCTCATAAGTATGTATCAATTCCACGATAGATGAGAGACTACTAGAGACCGTTAGCGCGGGATTAGGGATTATTAGGTAACCGGTACACCCAACACACGATCACATTCACACATACACATATACAACCACACACACA--CCCCCAAGAAACAGGCATAAACGCTACGAGCGCCTCTTGCACACCGGACAAAGAAGAAGGCAGGAAGTAATTAAATACGATGATGCATTAATTAATTCTCGAAACAAATCAAATTCTAATCATAGTTGATGATAAAAAA]

[+] EMBL BM601051             [CCGCACATATTAGGGCGCAAAGAGAGATTAGGCAGGTGCAACCACGAGTCCCCATCAATGGGTATTGATGGGACAAAAATGAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGGAAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTCTCGTTTTTTTTTCAGTTTTCGTCAAAGCAAAGCATACATATGTTGCTCATATCTACACGTGTATCTTCCGTTTTTTCTTCTTTTTTTCATTCATTTGTTTCATTTAGCATTTAGCTTCACTCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTGTTGCCTTTCAAGCATTTAGTTAGTTGTCCTAAGTTTAGCCTTTAATCTTATATTGTTCCAAATAATACGTAGTCTGAGCAGTGGGTGCGTGTGTATGCGCCTACACTATGATGCAAAATACGCAAGGGTAATGTTAGAGAGTTAGAAGTAAAGAAAACAAACAGAAATTTTTATACCAAATCACGTTAAGAAAAATGAGGAA                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AGA282220            [                    AGAGAGATTAGGCAGGTGCCCCCACGAGTCCCCATCAATGGGTATTGATGGGACAAAAATGAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGGAAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTCTCGTTTTTTTTTCAGTTTTCGTCAAAGCAAAGCATACATATGTTGCTCATATCTACACGTGTATCTTCCGTTTTTTCTTCTTTTTTTCATTCATTTGTTTCATTTAGCATTTAGCTTCACTCCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AGA283932            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTTAGAAAGTTAGAAGTAAAGAAAACAAACCGAAATTTTTATACCAAATCACGTTAAGAAAAATGAGGAAAAATTATATAGATCTTAAAAAATAGAAATAAATTAAGCGTATCAAGCGCATTCTCATAAGTATGTATCAATTCCACGATAGATGAGAGACTACTAGAGACCGTTAGCGCGGGATTAGGGATTATTAGGTAACCGGTACACCCAACACACGATCACATTCACACATACACATATACAACCACACACACA  CCCCCAAGAAACAGGCATAAACGCTACGAGCGCCTCTTGCACACCGGACAAAGAAGAAGGCAGGAAGTAATTAAATACGATGATGCATTAATTAATTCTCGAAACAAATCAAATTCTAATCATAGTTGATGATAAAAAA]
[-] EMBL AGA280517            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cacccaacACAGCATATACACGATCACATTCACACATACACATATACAACCACACACACACCCCCCCAAGAAACAGGCATAAACGCTACGAGCGCCTCTTGCACACCGGACAAAGAAGAAGGCAGGAAGTAATTAAATACGATGATGCATTATTTAATTCTCGAAACAAATCAAATTCTAATCATAGTTGATGATAAAAAA]




>consensus_6411#0
CCGCACATATTAGGGCGCAAAGAGAGATTAGGCAGGTGCAACCACGAGTCCCCATCAATG
GGTATTGATGGGACAAAAATGAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACC
GCTCGACCTTTACAAGTTGGAAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCA
CTTTTTGGTAGAAAGATTTCTCGTTTTTTTTTCAGTTTTCGTCAAAGCAAAGCATACATA
TGTTGCTCATATCTACACGTGTATCTTCCGTTTTTTCTTCTTTTTTTCATTCATTTGTTT
CATTTAGCATTTAGCTTCACTCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGT
TTTCTTATCTAGCTTATTTGTTGCCTTTCAAGCATTTAGTTAGTTGTCCTAAGTTTAGCC
TTTAATCTTATATTGTTCCAAATAATACGTAGTCTGAGCAGTGGGTGCGTGTGTATGCGC
CTACACTATGATGCAAAATACGCAAGGGTAATGTTAGAGAGTTAGAAGTAAAGAAAACAA
ACAGAAATTTTTATACCAAATCACGTTAAGAAAAATGAGGAAAAATTATATAGATCTTAA
AAAATAGAAATAAATTAAGCGTATCAAGCGCATTCTCATAAGTATGTATCAATTCCACGA
TAGATGAGAGACTACTAGAGACCGTTAGCGCGGGATTAGGGATTATTAGGTAACCGGTAC
ACCCAACACACGATCACATTCACACATACACATATACAACCACACACACACCCCCAAGAA
ACAGGCATAAACGCTACGAGCGCCTCTTGCACACCGGACAAAGAAGAAGGCAGGAAGTAA
TTAAATACGATGATGCATTAATTAATTCTCGAAACAAATCAAATTCTAATCATAGTTGAT
GATAAAAAA

consensusID : consensus_6411#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [AATTCGAACCATGCAACGTTTTAACGAATACCGGCAATATGGACACATATTAGGGCGCAAAGAGAGATTAGGCAGGTGCAACCATGAGTCCCCATCAATGGGTATTGATGGGACAAAAATGAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGGAAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTTTCGTTTTTTTTTCAGTTTTCGTCATATGTTGCTCATATCTACACGTGTATCTTCCGTTTTTTCTTCATTCATTTGTTTCATTTAGCATTTAGCTTCACTCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTGTTGCCTTTCAAG]

[+] EMBL AGA285228            [AATTCGAACCATGCAACGTTTTAACGAATACCGGCAATATGGACACATATTAGGGCGCAAAGAGAGATTAGGCAGGTGCAACCATGAGTCCCCATCAATGGGTATTGATGGGACAAAAATGAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGGAAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTTTCGTTTTTTTTTCAGTTTTCGTCATATGTTGCTCATATCTACACGTGTATCTTCCGTTTTTTCTTCATTCATTTGTTTCATTTAGCATTTAGCTTCACTCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTGTTGCCTTTCAAG]




>consensus_6411#1
AATTCGAACCATGCAACGTTTTAACGAATACCGGCAATATGGACACATATTAGGGCGCAA
AGAGAGATTAGGCAGGTGCAACCATGAGTCCCCATCAATGGGTATTGATGGGACAAAAAT
GAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGG
AAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTT
TCGTTTTTTTTTCAGTTTTCGTCATATGTTGCTCATATCTACACGTGTATCTTCCGTTTT
TTCTTCATTCATTTGTTTCATTTAGCATTTAGCTTCACTCCACTACCAATTCATTATATT
TACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTGTTGCCTTTCAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6411#0      ----------------------------------------CCGCACATATTAGGGCGCAA 20
consensus_6411#1      AATTCGAACCATGCAACGTTTTAACGAATACCGGCAATATGGACACATATTAGGGCGCAA 60
                                                                 *****************

consensus_6411#0      AGAGAGATTAGGCAGGTGCAACCACGAGTCCCCATCAATGGGTATTGATGGGACAAAAAT 80
consensus_6411#1      AGAGAGATTAGGCAGGTGCAACCATGAGTCCCCATCAATGGGTATTGATGGGACAAAAAT 120
                      ************************ ***********************************

consensus_6411#0      GAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGG 140
consensus_6411#1      GAAACGAACATTGCACGTAAAATATTCTAAGCGATCGACCGCTCGACCTTTACAAGTTGG 180
                      ************************************************************

consensus_6411#0      AAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTC 200
consensus_6411#1      AAGTTAAGCAATTACAAACACACAAACACCTATTTCTCCACTTTTTGGTAGAAAGATTTT 240
                      *********************************************************** 

consensus_6411#0      TCGTTTTTTTTTCAGTTTTCGTCAAAGCAAAGCATACATATGTTGCTCATATCTACACGT 260
consensus_6411#1      TCGTTTTTTTTTCAGTTTTCGTCA--------------TATGTTGCTCATATCTACACGT 286
                      ************************              **********************

consensus_6411#0      GTATCTTCCGTTTTTTCTTCTTTTTTTCATTCATTTGTTTCATTTAGCATTTAGCTTCAC 320
consensus_6411#1      GTATCTTCCGTTTTTTCTTC--------ATTCATTTGTTTCATTTAGCATTTAGCTTCAC 338
                      ********************        ********************************

consensus_6411#0      TCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTG 380
consensus_6411#1      TCCACTACCAATTCATTATATTTACCCTACTTGCGTCAGTTTTCTTATCTAGCTTATTTG 398
                      ************************************************************

consensus_6411#0      TTGCCTTTCAAGCATTTAGTTAGTTGTCCTAAGTTTAGCCTTTAATCTTATATTGTTCCA 440
consensus_6411#1      TTGCCTTTCAAG------------------------------------------------ 410
                      ************                                                

consensus_6411#0      AATAATACGTAGTCTGAGCAGTGGGTGCGTGTGTATGCGCCTACACTATGATGCAAAATA 500
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      CGCAAGGGTAATGTTAGAGAGTTAGAAGTAAAGAAAACAAACAGAAATTTTTATACCAAA 560
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      TCACGTTAAGAAAAATGAGGAAAAATTATATAGATCTTAAAAAATAGAAATAAATTAAGC 620
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      GTATCAAGCGCATTCTCATAAGTATGTATCAATTCCACGATAGATGAGAGACTACTAGAG 680
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      ACCGTTAGCGCGGGATTAGGGATTATTAGGTAACCGGTACACCCAACACACGATCACATT 740
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      CACACATACACATATACAACCACACACACACCCCCAAGAAACAGGCATAAACGCTACGAG 800
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      CGCCTCTTGCACACCGGACAAAGAAGAAGGCAGGAAGTAATTAAATACGATGATGCATTA 860
consensus_6411#1      ------------------------------------------------------------
                                                                                  

consensus_6411#0      ATTAATTCTCGAAACAAATCAAATTCTAATCATAGTTGATGATAAAAAA 909
consensus_6411#1      -------------------------------------------------