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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6416#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1452 fasta sequence
[TCGTCCTCCTCCTCCATGTCCTCGTCGTCCTCCTCCTCCTTCAGCAGCCCCGACAGCCCCCTGTCGCTGGTGATGAAGAAACCGTACCACGACGAGGACGAGGACCACGAGATGAAGCACGACGACGACGGCAAACCGTGGCGCCCATGGTAAATGTGTTTCGTGTGTGATCGTGTGTGATCGTGTGTGTGTGTCAGGCGAAGCCTAAGTACCTAAGGAGAAGAGCGGCGAGTGGGAAGATGCTGTGCAGACTTCCGGTCCGGGTTGACATTGCGCTTCATCGCTGGCTGCACCACCACCCATCGCTACCAGCACCACCACCCCCTCCCATGCACCGCAAAGTGATCACTAGTCATACGATTTTCCACCGATGGGAAATTCATGCATCTGAGTGTGTACATGTTTTTGTGTGTGTGTATAAAAGGGGGATGATCTTTGTGCAACAGTGTTTGTGCGTGCGTGTGCGGACGATCCGGGTGGGTGGCAGTAAGGCGCGGAGCGCGAATGTGTTTGTGATGCTGTGAGTAACTTTTAAGAAGAAGAAACAACAACAAAAAAGCAGGAATCGATTAGGGCATTAGGATGTTTGGTGCACAAAACGTATGTTTGTGTGTGTGTGTGTAGCATCTAGCAAAAAACAGGGTGTAAAAGCTTTATCAACTACCGTCGTTACGTGAGAGTGTTTTTTTTTAGTAAACAGGGGAACACACACGGATTATTACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTTTAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTTCCCCCCTTTTTTTGGCGACAAAAATCACTAACGTCTTCCAGCGCGTAGTAAAAATGTGAAAACACATTGGCGCATAGGCGAAAAGGCGCAACAAAATCGCACACATATACACAAAAGGATACATACAAACTCCCGCCATTCGTGCCAAGCGATGTGTGGTAGCAAAGTCTTCCAAAAACCTTCCCCTGCGAGCACAATTACTATTGTGCTGAAGCAACAACTGCTGTACACAATTTGTCTGGCACACTGTGTTTGTCGTGAGATTGTATTGTGTGCCTGTTTTTGTGCGTGATCGTGCGCCTTTGCCTTAGTGCTGATCGTGCTTTTTGTGTCGCATTTTTCGCGACACACAACAGGGTAGATAGACGTTCTTTTAAGCGGCTAAGAGAACTTTTAACTTAAAACGTTCGTTTAAATTATTGCTCACAACCTCACGTCTTTTGTTGAGTTCAGTAGGGGACAGTAGGTGAGAAAAAAGAAACACAAGAAAGGAGCTTATGTAAGACACAAAGAGTGAGGAAAAACAGTAAGCAAATCTGTAGGGAAAGGAAAAAGCAGGAGTGAAAGAGCAGAGCTAAAAATTGTACATACATTATATAGAGGTTAATATAAACCTAGCCTG]
[+] EMBL BX607618 [TCGTCCTCCTCCTCCATGTCCTCGTCGTCCTCCTCCTCCTTCAGCAGCCCCGACAGCCCCCTGTCGCTGGTGATGAAGAAACCGTACCACGACGAGGACGAGGACCACGAGATGAAGCACGACGACGACGGCAAACCGTGGCGCCCATGGTAAATGTGTTTCGTGTGTGATCGTGTGTGATCGTGTGTGTGTGTCAGGCGAAGCCTAAGTACCTAAGGAGAAGAGCGGCGAGTGGGAAGATGCTGTGCAGACTTCCGGTCCGGGTTGACATTGCGCTTCATCGCTGGCTGCACCACCACCCATCGCTACCAGCACCACCACCCCCTCCCATGCACCGCAAAGTGATCACTAGTCATACGATTTTCCACCGATGGGAAATTCATGCATCTGAGTGTGTACATGTTTTTGTGTGTGTGTATAAAAGGGGGATGATCTTTGTGCAACAGTGTTTGTGCGTGCGTGTGCGGACGATCCGGGTGGGTGGCAGTAAGGCGCGGAGCGCGAATGTGTTTGTGATGCTGTGAGTAACTTTTAAGAAGAAGAAACAACAACAAAAAAGCAGGAATCGATTAGGGCATTAGGATGTTTGGTGCACAAAACGTATGTTTGTGTGTGTGTGTGTAGCATCTAGCAAAAAACAGGGTGTAAAAGCTTTATCAACTACCGTCGTTACGTGAGAGTGTTTTTTTTTAGTAAACAGGGGAACACACACGGATTATTACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTTTAGTTTTAGGAATTGT ]
[+] EMBL BX624390 [ GTGTGATCGTGTGTGATCGTGTGTGTGTGTCAGGCGAAGCCTAAGTACCTAAGGAGAAGAGCGGCGAGTGGGAAGATGCTGTGCAGACTTCCGGTCCGGGTTGACATTGCGCTTCATCGCTGGCTGCACCACCACCCATCGCTACCAGCACCACCACCCCCTCCCATGCACCGCAAAGTGATCACTAGTCATACGATTTTCCACCGATGGGAAATTCATGCATCTGAGTGTGTACATGTGTTTGTGTGTGTGTATAAAAGGGGGATGATCTTTGTGCAACAGTGTTTGTGCGTGCGTGTGCGGACGATCCGGGTGGGTGGCAGTAAGGCGCGGAGCGCGAATGTGTTTGTGATGCTGTGAGTAACTTTTAAGAAGAAGAAACAACAACAAAAAAGCAGGAATCGATTAGGGCATTAGGATGTTTGGTGCACAAAACGTATGTTTGTGTGTGTGTGTGTAGCATCTAGCAAAAAACAGGGTGTAAAAGCTTTATCAACTACCGTCGTTACGTGAGAGTGTTTTTTTTTAGTAAACAGGGGAACACACACGGATTATTACCTTCTCCTCGCCATAGTTTCAGGNGTGTTTTTTGNTGTC ]
[+] EMBL AGA283511 [ TTTTTGTTGTCTCTCCCGGCCGCAAGGTTTAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTTCCCCCCTTTTTTTGGCGACAAAAATCACTAACGTCTTCCAGCGCGTAGTAAAAATGTGAAAACACATTGGCGCATAGGCGAAAAGGCGCAACAAAATCGCACACATATACACAAAAGGATACATACAAACTCCCGCCATTCGTGCCAAGCGATGTGTGGTAGCAAAGTCTTCCAAAAACCTTCCCCTGCGAGCACAATTACTATTGTGCTGAAGCAACAACTGCTGTACACAATTTGTCTGGCACACTGTGTTTGTCGTGAGATTGTATTGTGTGCCTGTTTTTGTGCGTGATCGTGCGCCTTTGCCTTAGTGCTGATCGTGCTTTTTGTGTCGCATTTTTCGCGACACACAACAGGGTAGATAGACGTTCTTTTAAGCGGCTAAGAGAACTTTTAACTTAAAACGTTCGTTTAAATTATTGCTCACAACCTCACGTCTTTTGTTGAGTTCAGTA ]
[-] EMBL AGA284804 [ CGTGAGATTGTATTGTGTACCTGTTTTTGTGCGTGATCGTGCGCCTTTGCCTTAGTGCTGATCGTGCTTTATGTGTCGCATTTTTCGCGACACACAACAGGGTAGATAGACGTTCTTTTAAGCGGCTAAGAGAACTTTTAACTTAAAACGTTCGTTTAAATTATTGCTCACAACCTCACGTCTTTTGTTGAGTTCAGTAGGGGACAGTAGGTGAGAAAAAAGAAACACAAGAAAGGAGCTTATGTAAGACACAAAGAGTGAGGAAAAACAGTAAGCAAATCTGTAGGGAAAGGAAAAAGCAGGAGTGAAAGAGCAGAGCTAAAAATTGTACATACATTATATAGAGGTTAATATAAACCTAGCCTG]
consensusID : consensus_6416#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence
[AGGGGAACACACTTCGGATTATTACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTTGTGAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTNTCCCCCCTTTTNTNNCGNGCNGCNACNACACCACNATNCNACNTCANANCNGNTNCNNNTAACNCAANGCNCNGANCNGNTTAAANNNTNAAAAAAAAAAAANTTGGGTTNGGAAAAAAAACCCACCCATTTTNGNGNCCGCCCATNAGGGNCGNAAAAGGCGCAACAAAATCGCACACATAATACACAAAAGGATACATACAAACTNCNCCGCCCAATNTCGTGGGCCCAAAGGCCGGATTGNTTGNTNNGGGGTTAAAGCCCAAAAAAAAGTTTCACTTANNNACNANNAAAANANAACAAANCCACNTNTNCACNCCCCCCCNTNCGCCCNNCNAACNCCAACCAAAANTCCAACNTCATCCCGTTGCTCGAACCCAACCACCCGCCTCGTAACACCATTCGTCTGGGCCCACCTGTG]
[+] EMBL BX619442 [AGGGGAACACACTTCGGATTATTACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTTGTGAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTNTCCCCCCTTTTNTNNCGNGCNGCNACNACACCACNATNCNACNTCANANCNGNTNCNNNTAACNCAANGCNCNGANCNGNTTAAANNNTNAAAAAAAAAAAANTTGGGTTNGGAAAAAAAACCCACCCATTTTNGNGNCCGCCCATNAGGGNCGNAAAAGGCGCAACAAAATCGCACACATAATACACAAAAGGATACATACAAACTNCNCCGCCCAATNTCGTGGGCCCAAAGGCCGGATTGNTTGNTNNGGGGTTAAAGCCCAAAAAAAAGTTTCACTTANNNACNANNAAAANANAACAAANCCACNTNTNCACNCCCCCCCNTNCGCCCNNCNAACNCCAACCAAAANTCCAACNTCATCCCGTTGCTCGAACCCAACCACCCGCCTCGTAACACCATTCGTCTGGGCCCACCTGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6416#0 TCGTCCTCCTCCTCCATGTCCTCGTCGTCCTCCTCCTCCTTCAGCAGCCCCGACAGCCCC 60
consensus_6416#1 ------------------------------------------------------------
consensus_6416#0 CTGTCGCTGGTGATGAAGAAACCGTACCACGACGAGGACGAGGACCACGAGATGAAGCAC 120
consensus_6416#1 ------------------------------------------------------------
consensus_6416#0 GACGACGACGGCAAACCGTGGCGCCCATGGTAAATGTGTTTCGTGTGTGATCGTGTGTGA 180
consensus_6416#1 ------------------------------------------------------------
consensus_6416#0 TCGTGTGTGTGTGTCAGGCGAAGCCTAAGTACCTAAGGAGAAGAGCGGCGAGTGGGAAGA 240
consensus_6416#1 ------------------------------------------------------------
consensus_6416#0 TGCTGTGCAGACTTCCGGTCCGGGTTGACATTGCGCTTCATCGCTGGCTGCACCACCACC 300
consensus_6416#1 ------------------------------------------------------------
consensus_6416#0 CATCGCTACCAGCACCACCACCCCCTCCCATGCACCGCAAAGTGATCACTAGTCATACGA 360
consensus_6416#1 ------------------------------------------------------------
consensus_6416#0 TTTTCCACCGATGGGAAATTCATGCATCTGAGTGTGTACATGTTTTTGTGTGTGTGTATA 420
consensus_6416#1 ------------------------------------------------------------
consensus_6416#0 AAAGGGGGATGATCTTTGTGCAACAGTGTTTGTGCGTGCGTGTGCGGACGATCCGGGTGG 480
consensus_6416#1 ------------------------------------------------------------
consensus_6416#0 GTGGCAGTAAGGCGCGGAGCGCGAATGTGTTTGTGATGCTGTGAGTAACTTTTAAGAAGA 540
consensus_6416#1 ------------------------------------------------------------
consensus_6416#0 AGAAACAACAACAAAAAAGCAGGAATCGATTAGGGCATTAGGATGTTTGGTGCACAAAAC 600
consensus_6416#1 ------------------------------------------------------------
consensus_6416#0 GTATGTTTGTGTGTGTGTGTGTAGCATCTAGCAAAAAACAGGGTGTAAAAGCTTTATCAA 660
consensus_6416#1 ------------------------------------------------------------
consensus_6416#0 CTACCGTCGTTACGTGAGAGTGTTTTTTTTTAGTAAACAGGGGAACACACA-CGGATTAT 719
consensus_6416#1 --------------------------------------AGGGGAACACACTTCGGATTAT 22
************ ********
consensus_6416#0 TACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTT 779
consensus_6416#1 TACCTTCTCCTCGCCATAGTTTCAGGTGTGTTTTTTGTTGTCTCTCCCGGCCGCAAGGTT 82
************************************************************
consensus_6416#0 T--AGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTTCCCCCCT 837
consensus_6416#1 GTGAGTTTTAGGAATTGTTTAGTTTTGCAAAAAAAAAAAAGTTAATTTAGTTNTCCCCCC 142
************************************************* *****
consensus_6416#0 TTTTTTGGCGACAAAAATCACTAACGTCTTCCAGCGCGTAGTAAAAATGTGAAAACACAT 897
consensus_6416#1 TTTTNTNNCGNGCNGCNACNACACCACNATNCNACNTCANANCNGNTNCNNNTAACNCAA 202
**** * ** * * * * * * *** **
consensus_6416#0 TG-GCGCATAGGCGAAAAGGCGCAACAAAATCGCACACATATACACAAAAGGATACATAC 956
consensus_6416#1 NGCNCNGANCNGNTTAAANNNTNAAAAAAAAAAAANTTGGGTTNGGAAAAAAA-ACCCAC 261
* * * * *** ** **** * * **** * ** **
consensus_6416#0 AAACTCCCGCCATTCGTGCCAAGCGATGTGTGGTAGCAAAGTCTTCCAAAAACCTTCCCC 1016
consensus_6416#1 CCATT-------TTNGNGNCCGCCCATNAGGGNCGNAAAAGGCGCAACAAAATC------ 308
* * ** * * * * ** * * **** * **** *
consensus_6416#0 TGCGAGCACAATTACTATTGTGCTGAAGCAACAACTGCTGTACACAATTTGTCTGGCACA 1076
consensus_6416#1 -GCACACATAATACACAAAAGGATACA-TACAAACTNCNCCGCCCAATNTCGTGGGCCCA 366
** ** *** * * * * * **** * * **** * *** **
consensus_6416#0 CTGTGTTTGTCGTGAGATTGTATTGTGTGCCTGTTTTTGTGCGTGATCGTGCGCCTTTGC 1136
consensus_6416#1 AAG--------GCCGGATTGNTTGNTNNG---GGGTTAAAGCCCAAAAAAAAGT-TTCAC 414
* * ***** * * * * ** ** * * ** *
consensus_6416#0 CTTAGTGCTGATCGTGCTTTTTGTGTCGCATTTTTCGCGACACACAACAGGGTAGATAGA 1196
consensus_6416#1 TTANNNACNANNAAAANANAACAAANCCACNTNTNCACNCCCCCCCNTN----------- 463
* * * * * * * * * *
consensus_6416#0 CGTTCTTTTAAGCGGCTAAGAGAACTTTTAACTTAAAACGTTCGTTTAAATT--ATTGCT 1254
consensus_6416#1 CGCCCNNCNAACN--CCAACCAAAANTCCAACNTCATCCCGTTGCTCGAACCCAACCACC 521
** * ** * ** ** * *** * * * * * * ** * *
consensus_6416#0 CACAACCTCACGTCTTTTGT-TGAGTTCAGTAGGGGACAGTAGGTGAGAAAAAAGAAACA 1313
consensus_6416#1 CGCCTCGTAACACCATTCGTCTGGGCCCACCTGTG------------------------- 556
* * * * ** * ** ** ** * ** * *
consensus_6416#0 CAAGAAAGGAGCTTATGTAAGACACAAAGAGTGAGGAAAAACAGTAAGCAAATCTGTAGG 1373
consensus_6416#1 ------------------------------------------------------------
consensus_6416#0 GAAAGGAAAAAGCAGGAGTGAAAGAGCAGAGCTAAAAATTGTACATACATTATATAGAGG 1433
consensus_6416#1 ------------------------------------------------------------
consensus_6416#0 TTAATATAAACCTAGCCTG 1452
consensus_6416#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||