cluster # 6424

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Anopheles gambiae
cluster # 6424 cluster # 6424 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6424#0 length = 861 sequences # 2

consensus_6424#1 length = 662 sequences # 2
consensus_6424#2 length = 423 sequences # 1

consensusID : consensus_6424#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 861
fasta sequence

                              [CGTGTTTAAAGCAACATANAGAAAAAAGGAAAACTTCGACTGTGAAATGATTCCAACAGCAAGCACGGCATATTTTAACAATAAGAGAAAACACAACGGAAAAAAAACGCATAAACCCCCAACAGTCATAAACGCTATTGCTGAAACACTGTAACGAAAAAGAAACAGTGTGTGTTTGTAAATAGAAAGAAAAAGAAAAGAAAGGAGGAGTGAAGTAATCATAGAAAAAACGAATAAAAACCTATTAACTAGAATTATACAAAAAAAACTAAATCGTTAAAAAGAAAAACAAATACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAATTAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAAAAGAAAAGCAACAAACGAATAGGAAGTGAAAAATTCATGCAAATAGGAATGAAATACAAACTTATATCAAGCAGTAAACAGAGGAAGTGGAAAACACTATTCGTGAAAAGTATTGCGGGGTTGTTATCAATTTTAAAATAAAAAATAAAACAAAACAAACATATACCATAGCTAGAGAAAAGAAATAAAAACACAAAACTCCAGAAAAAAAATATTTGTAAAAATTGATGTTCAAAGGAAGAGGTAACNAAAGCAAATCGGAGAGAAGCAGCAGGTATTGTTGTTTCAAAATAGCTATCAACCGTAGAGCAATGAAAGAGCGAAAAAAACAAGAATGAAATAATCAACGTAACTGTGGATAGAAATTATGGAACGATTCGAAACAAAATGGCAAACAAAATCAAATCAAAATCAACGTGCGTGATCGTGGTAGGACGAACAGTTGAACACA]

[+] EMBL BX626807             [CGTGTTTAAAGCAACATANAGAAAAAAGGAAAACTTCGACTGTGAAATGATTCCAACAGCAAGCACGGCATATTTTAACAATAAGAGAAAACACAACGGAAAAAAAACGCATAAACCCCCAACAGTCATAAACGCTATTGCTGAAACACTGTAACGAAAAAGAAACAGTGTGTGTTTGTAAATAGAAAGAAAAAGAAAAGAAAGGAGGAGTGAAGTAATCATAGAAAAAACGAATAAAAACCTATTAACTAGAATTATACAAAAAAAACTAAATCGTTAAAAAGAAAAACAAATACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAATTAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAAAAGAAAAGCAACAAACGAATAGGAAGTGAAAAATTCATGCAAATAGGAATGAAATACAAACTTATATCAAGCAGTAAACAGAGGAAGTGGAAAACACTATTCGTGAAAAGTATTGCGGGGTTGTTATCAATTTTAAAATAAAAAATAAAACAAAACAAACATATACCATAGCTAGAGAAAAGAAATAAAAACACAAAACTCCAGAAAAAAAATATTTGTAAAAATTGATGTTCAAAGGAAGAGGTAACNAAAGCAAATCGGAG                                                                                                                                                                                            ]
[+] EMBL BM650032             [                                                                                                                                                                                                                                                                                                                                                                                                                                                  ccgGAAAAATTCATGCAAATAGGAATTAATTACAAACTTATATCAAACAGTAAACAAAGGAAGTGGAAAACACTATTCGTGACAAGTATTGCGGAGTTGTTATCAATTTTAAAATAAAAAATAAAACAGAACAAACATATACCATAGCTAGAGAAAAGAAATAAAAACACAAAACTCCAGAAAAAAAATATTTGTAAAAATTGATGTTCAAAGGAAGAGGTAACAAAAGCCAATCGGAGAGAAGCAGCAGGTATTGTTGTTTCAAAATAGCTATCAACCGTAGAGCAATGAAAGAGCGAAAAAAACAAGAATGAAATAATCAACGTAACTGTGGATAGAAATTATGGAACGATTCGAAACAAAATGGCAAACAAAATCAAATCAAAATCAACGTGCGTGATCGTGGTAGGACGAACAGTTGAACACA]




>consensus_6424#0
CGTGTTTAAAGCAACATANAGAAAAAAGGAAAACTTCGACTGTGAAATGATTCCAACAGC
AAGCACGGCATATTTTAACAATAAGAGAAAACACAACGGAAAAAAAACGCATAAACCCCC
AACAGTCATAAACGCTATTGCTGAAACACTGTAACGAAAAAGAAACAGTGTGTGTTTGTA
AATAGAAAGAAAAAGAAAAGAAAGGAGGAGTGAAGTAATCATAGAAAAAACGAATAAAAA
CCTATTAACTAGAATTATACAAAAAAAACTAAATCGTTAAAAAGAAAAACAAATACTAGA
AATCGAAAACAGAAACTAGAAATTGATGTTGATGAATTAAAAACGTGTAAATAGCATAAC
TTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAAAAGAAAAGCA
ACAAACGAATAGGAAGTGAAAAATTCATGCAAATAGGAATGAAATACAAACTTATATCAA
GCAGTAAACAGAGGAAGTGGAAAACACTATTCGTGAAAAGTATTGCGGGGTTGTTATCAA
TTTTAAAATAAAAAATAAAACAAAACAAACATATACCATAGCTAGAGAAAAGAAATAAAA
ACACAAAACTCCAGAAAAAAAATATTTGTAAAAATTGATGTTCAAAGGAAGAGGTAACNA
AAGCAAATCGGAGAGAAGCAGCAGGTATTGTTGTTTCAAAATAGCTATCAACCGTAGAGC
AATGAAAGAGCGAAAAAAACAAGAATGAAATAATCAACGTAACTGTGGATAGAAATTATG
GAACGATTCGAAACAAAATGGCAAACAAAATCAAATCAAAATCAACGTGCGTGATCGTGG
TAGGACGAACAGTTGAACACA

consensusID : consensus_6424#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 662
fasta sequence

                              [ATCGCCCGAGGTTAAAGGTGAT-AACTAACTTGATGTAACAAAAAAAACCAGCAACAACAACAGAAAATAAATGAAACGGAATAGCCGTATTTGAAGCAACATAAAGAAAAAAGGAAAAACTTCGACTGTGAAAAGATTCCAACAGCAAACACGGCATATTTTAACAATAAGAGAAAACGCAACAGAAAAAAAACACATAAACCCCCGAAAGTCATAAACGCTATAGCTAAAACACTGTAACGAAAGAAAANACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAAGAGAAGTGTAGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAAAAAACTAAATCGTTAAAAAGAAGAACAAACACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAACAAACAAGAAAAGCAACAAACGANATAGCGAAGTGAACACACATTCATGCAACATAGGCAATTCAAATACACACACTTATAT-CAAGCAGTAAACAGACGCGAAGTGGCCNNAC-ACTCATCCCGTCGACCACGTATTGCGCGCGGTTCGTCATCAA]

[+] EMBL AL931802             [ATCGCCCGAGGTTAAAGGTGAT AACTAACTTGATGTAACAAAAAAAACCAGCAACAACAACAGAAAATAAATGAAACGGAATAGCCGTATTTGAAGCAACATAAAGAAAAAAGGAAAAACTTCGACTGTGAAAAGATTCCAACAGCAAACACGGCATATTTTAACAATAAGAGAAAACGCAACAGAAAAAAAACACATAAACCCCCGAAAGTCATAAACGCTATAGCTAAAACACTGTAACGAAAGAAAANACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAAGAGAAGTGTAGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAAAAAACTAAATCGTTAAAAAGAAGAACAAACACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAACAAACAAGAAAAGCAACAAACGANATAGCGAAGTGAACACACATTCATGCAACATAGGCAATTCAAATACACACACTTATAT CAAGCAGTAAACAGACGCGAAGTGGCCNNAC ACTCATCCCGTCGACCACGTATTGCGCGCGGTTCGTCATCAA]
[+] EMBL BX623311             [             AAAGGTGATAAACTAACTTGATGTAACAAAAAAAACCAGCAACAACAACAGAAAATAAATGAAACGGAATAGCCGTATTTGAAGCAACATAAAGAAAAAAGGAAAAACTTCGACTGTGAAAAGATTCCAACAGCAAACACGGCATATTTTAACAATAAGAGAAAACGCAACAGAAAAAAAACACATAAACCCCCGAAAGTCATAAACGCTATAGCTAAAACACTGTAACGAAAGAAAAAACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAAGAGAAGTGTAGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAAAAAACTAAATCGTTAAAAAGAAGAACAAACACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAACAAAAAAGAAAAGCAACAAACGA ATAG GAAGTG   ANACATTCATGCAA ATAGG AATT AAATAC CAAACTTATATCCAAGCAGTAAACAGA G GAAGTGGGAAAACAACT AT TCGT GA CANGTATTGCGgg              ]




>consensus_6424#1
ATCGCCCGAGGTTAAAGGTGATAACTAACTTGATGTAACAAAAAAAACCAGCAACAACAA
CAGAAAATAAATGAAACGGAATAGCCGTATTTGAAGCAACATAAAGAAAAAAGGAAAAAC
TTCGACTGTGAAAAGATTCCAACAGCAAACACGGCATATTTTAACAATAAGAGAAAACGC
AACAGAAAAAAAACACATAAACCCCCGAAAGTCATAAACGCTATAGCTAAAACACTGTAA
CGAAAGAAAANACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAAGAGAAGTGT
AGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAA
AAAACTAAATCGTTAAAAAGAAGAACAAACACTAGAAATCGAAAACAGAAACTAGAAATT
GATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATG
TGTTTTCGAAACAAACAAACAAACAAACAAACAAGAAAAGCAACAAACGANATAGCGAAG
TGAACACACATTCATGCAACATAGGCAATTCAAATACACACACTTATATCAAGCAGTAAA
CAGACGCGAAGTGGCCNNACACTCATCCCGTCGACCACGTATTGCGCGCGGTTCGTCATC
AA

consensusID : consensus_6424#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [GAAAAAGAAACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAGGATAAGTGTAGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAAAAAAACTAAATCGTTAAAAAGAAAAACAAACACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAACAAACAAACAAAAAGAAAAGCAACAAACGAATAGGAAGTGAAAAATTCATGCAAATAGGAATTAATTACAAACTTATATCAAGCAGTAAACAAAGGAAGTGGAAAACACTATTCGTGACAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGGGGGGC]

[+] EMBL CNS08K8C             [GAAAAAGAAACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAGGATAAGTGTAGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAAAAAAACTAAATCGTTAAAAAGAAAAACAAACACTAGAAATCGAAAACAGAAACTAGAAATTGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGTGTTTTCGAAACAAACAAACAAACAAACAAACAAACAAAAAGAAAAGCAACAAACGAATAGGAAGTGAAAAATTCATGCAAATAGGAATTAATTACAAACTTATATCAAGCAGTAAACAAAGGAAGTGGAAAACACTATTCGTGACAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGGGGGGC]




>consensus_6424#2
GAAAAAGAAACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAGGATAAGTGTAG
TAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAAAA
AAACTAAATCGTTAAAAAGAAAAACAAACACTAGAAATCGAAAACAGAAACTAGAAATTG
ATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAATGT
GTTTTCGAAACAAACAAACAAACAAACAAACAAACAAAAAGAAAAGCAACAAACGAATAG
GAAGTGAAAAATTCATGCAAATAGGAATTAATTACAAACTTATATCAAGCAGTAAACAAA
GGAAGTGGAAAACACTATTCGTGACAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGGGG
GGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6424#1      ATCGCCCGAGGTTAAAGGTGATAACTAACTTGATGTAACAAAAAAAACCAGCAACAACAA 60
consensus_6424#2      ------------------------------------------------------------
consensus_6424#0      ------------------------------------------------------------
                                                                                  

consensus_6424#1      CAGAAAATAAATGAAACGGAATAGCCGTATTTGAAGCAACATAAAGAAAAAAGGAAAAAC 120
consensus_6424#2      ------------------------------------------------------------
consensus_6424#0      -------------------------CGTGTTTAAAGCAACATANAGAAAAAAGGAAAA-C 34
                                                                                  

consensus_6424#1      TTCGACTGTGAAAAGATTCCAACAGCAAACACGGCATATTTTAACAATAAGAGAAAACGC 180
consensus_6424#2      ------------------------------------------------------------
consensus_6424#0      TTCGACTGTGAAATGATTCCAACAGCAAGCACGGCATATTTTAACAATAAGAGAAAACAC 94
                                                                                  

consensus_6424#1      AACAGAAAAAAAACACATAAACCCCCGAAAGTCATAAACGCTATAGCTAAAACACTGTAA 240
consensus_6424#2      ------------------------------------------------------------
consensus_6424#0      AACGGAAAAAAAACGCATAAACCCCCAACAGTCATAAACGCTATTGCTGAAACACTGTAA 154
                                                                                  

consensus_6424#1      CGAAAGAAAANACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAAGAGAAGTGT 300
consensus_6424#2      --GAAAAAGAAACAGTGTGTGTTTGTAAATAGAAAGAAAGAGAAAAGAAAGGATAAGTGT 58
consensus_6424#0      CGAAA-AAGAAACAGTGTGTGTTTGTAAATAGAAAGAAAAAGAAAAGAAAGGAGGAGTGA 213
                         ** ** * **************************** ********** **  **** 

consensus_6424#1      AGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAA 360
consensus_6424#2      AGTAATCATAGAAAAAAAACGAATGAAAACCTATTAACTAGAATTATACAAAAACAAAAA 118
consensus_6424#0      AGTAATCATAGAAAAAA--CGAATAAAAACCTATTAACTAGAATTATACAAAAAAAA--- 268
                      *****************  ***** ***************************** **   

consensus_6424#1      AAAA-CTAAATCGTTAAAAAGAAGAACAAACACTAGAAATCGAAAACAGAAACTAGAAAT 419
consensus_6424#2      AAAAACTAAATCGTTAAAAAGAAAAACAAACACTAGAAATCGAAAACAGAAACTAGAAAT 178
consensus_6424#0      -----CTAAATCGTTAAAAAGAAAAACAAATACTAGAAATCGAAAACAGAAACTAGAAAT 323
                           ****************** ****** *****************************

consensus_6424#1      TGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAAT 479
consensus_6424#2      TGATGTTGATGAAATGAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAAT 238
consensus_6424#0      TGATGTTGATGAA-TTAAAAACGTGTAAATAGCATAACTTAGCATTTAACGTCTCTAAAT 382
                      ************* * ********************************************

consensus_6424#1      GTGTTTTCGAAACAAACAAACAAACAAACAAACAA-------GAAAAGCAACAAACGANA 532
consensus_6424#2      GTGTTTTCGAAACAAACAAACAAACAAACAAACAAACAAAAAGAAAAGCAACAAACGAA- 297
consensus_6424#0      GTGTTTTCGAAACAAACAAACAAACAAAAA------------GAAAAGCAACAAACGAA- 429
                      **************************** *            ****************  

consensus_6424#1      TAGCGAAGTGAACACACATTCATGCAACATAGGCAATTCAAATACACACACTTATATCAA 592
consensus_6424#2      TAG-GAAGTGAAAA---ATTCATGCAA-ATAGG-AATT--AAT-TACAAACTTATATCAA 348
consensus_6424#0      TAG-GAAGTGAAAA---ATTCATGCAA-ATAGG--AATGAAAT--ACAAACTTATATCAA 480
                      *** ******** *   ********** *****  * *  ***  *** ***********

consensus_6424#1      GCAGTAAACAGACGCGAAGTGGCCNNACACTCATCCCGTCGACCACGTA-TTGCGCGCG- 650
consensus_6424#2      GCAGTAAACAAAGGAAGTGGAAAACACTATTCGTGACAAAAAAAAAAAA-GGCCACATGT 407
consensus_6424#0      GCAGTAAACAGAGGAAGTGGAAAACACTATTCGTGAAAAGTATTGCGGGGTTGTTATCAA 540
                      ********** * *    *         * ** *       *                  

consensus_6424#1      GTTCGTCATCAA------------------------------------------------ 662
consensus_6424#2      GCTCGAGCTGGGGGGC-------------------------------------------- 423
consensus_6424#0      TTTTAAAATAAAAAATAAAACAAAACAAACATATACCATAGCTAGAGAAAAGAAATAAAA 600
                        *     *                                                   

consensus_6424#1      ------------------------------------------------------------
consensus_6424#2      ------------------------------------------------------------
consensus_6424#0      ACACAAAACTCCAGAAAAAAAATATTTGTAAAAATTGATGTTCAAAGGAAGAGGTAACNA 660
                                                                                  

consensus_6424#1      ------------------------------------------------------------
consensus_6424#2      ------------------------------------------------------------
consensus_6424#0      AAGCAAATCGGAGAGAAGCAGCAGGTATTGTTGTTTCAAAATAGCTATCAACCGTAGAGC 720
                                                                                  

consensus_6424#1      ------------------------------------------------------------
consensus_6424#2      ------------------------------------------------------------
consensus_6424#0      AATGAAAGAGCGAAAAAAACAAGAATGAAATAATCAACGTAACTGTGGATAGAAATTATG 780
                                                                                  

consensus_6424#1      ------------------------------------------------------------
consensus_6424#2      ------------------------------------------------------------
consensus_6424#0      GAACGATTCGAAACAAAATGGCAAACAAAATCAAATCAAAATCAACGTGCGTGATCGTGG 840
                                                                                  

consensus_6424#1      ---------------------
consensus_6424#2      ---------------------
consensus_6424#0      TAGGACGAACAGTTGAACACA 861