cluster # 6426

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Anopheles gambiae
cluster # 6426 cluster # 6426 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6426#0 length = 730 sequences # 3

consensus_6426#1 length = 715 sequences # 1
consensus_6426#2 length = 484 sequences # 1

consensusID : consensus_6426#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 730
fasta sequence

                              [CCGGTCAAAACGGGCATTTACGAGACCAGATAATTGAACAGATTTTAGCTAAAAGTGTATTGATAAAAACGAGTCGTGCATTAACTTAGTGCTAAAATGTGTTCTATTTACTTGATTTACCTCTAGTATTATTGTAATTCACAATTGGACTCACGCCGTTGTGCATACTTTTCCCTAAGGACAAAGGACAACAAACACTCCTCGTCATATCGAACACCTTTTTTCATAACAAACCGATGGTAATGAACATGTATTCCCATCTTTCGGGAGGTCGGGCTAACGTACAGCTGCTGCAGGAAGCAGCCGTGCGGGAGTTTGTAAAGATTCTTGATCGCTGCG-AAGGCACAAAGGCAATCATTTGGGATGAGTCATTGGGTGGG-CCGGT-GGGGCTTGTGGCACGATACACGTT-CCTCAAGGAGCACCACGTTACCAAGATGTATCCGCTCCGGTCGGAAGCGTGGACGGACATCGATGTGAAGAACATTATCTTCATAACACGCCCCCATCAAACGCTGATGGATTACATCGCCAACAACATTCACGAGGAGGAGCGGAAACGAAAAGTTTCTCGCAAAGAGTATTTCCTGTACTTTCTGCCGAAAAAATCTTTCCTGTGCGAAAAGCGGCTGCAAATCAAGGGCGTACACGGCAGTCTGTCCTACATTGGCGAGTTTCGCTGCGAGTTTTTCCCATTCGACAACGATCTGCTTTCGATGGAGCTGAAAGATGC]

[+] EMBL BM648687             [CCGGTCAAAACGGGCATTTACGAGACCAGATAATTGAACAGATTTTAGCTAAAAGTGTATTGATAAAAACGAGTCGTGCATTAACTTTGTGCTAAAATGTGTTCTATTTACTTGATTCACCTTTAGTATTATTGTAATTCACAATTGGACTCACGCCGTTGTGCATACTTTTCCCTAAGGACAAAGGACAACAAACACTCCTCGTCATATCGAACACCTTTTTTCATAACAAACCGATGGTAATGAACATGTATTCCCATCTTTCGGGAGGTCGGGCTAACGTACAGCTGCTGCAGGAAGCAGCCGTGCGGGAGTTTGTAAAGATTCTTGATCGCTGCG AAGGCACAAAGGCAATCATTTGGGATGAGTCATTGGGTGGG CCGGT GGGGCTTGTGGCACGATACACGTT CCTCAAGGAGCACCACGTTACCAAGATGTATCCGCTCCGGTCGGAAGCGTGGACGGACATCGATGTGAAGAACATTATCTTCATAACACGCCCCCATCAAACGCTGATGGATTACATCGCCAACAACATTCACGAGGAGGAGCGGAAACGAAAAGTTTCTCGCAAAGAGTATTTCCTGTACTTTCTGCCGAAAAAATCTTTCCTGTGCGAAAAGCGGCTGCAAAT                                                                                                ]
[+] EMBL BX619081             [                                                CTAAAAGTGTATTGATAAAAACGAGTCATGCATTAACTTAGTGCTAAAATGTGTTCTATTTACTTGATTTACCTCTAGTATTATTGTAATTCACAATTGGACTCACGCCGTTGTGCATACTTTTCCCTAAGGACAAAGGACAACAAACACTCCTCGTCATATCGAACACC TTTTTCATAACAAACCGATGGTAATGAACATGTATTCCCATCTTTCGGGAGGTCGGGCTAACGTACAGCTGCTGCAGGAAGCAGCCGTACGGGAGTTTGTAAAGATTCTTGATCGCTGCGAAAGGCACAAAGGCAATCATTTGGGATGAGTCATTGGGTGGGCCCGGTGGGGGCTTGTGGCACGATACACGTTCCCTCAAGGAGCACC                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM579276             [                                                           ccGATAAAAACGAGTCGTGCATAAACTTAGTGCTAAAATGTGTTATATTTACTTGATTTACCTCTAGTTTTATTGTAATTCACAATTGGACTCACGCCGTTGTGCATACTTTTCCCTAAGGATAAAGGACAACAAACACTTCTCATCATATCGAACTCCTTTTTTCATAACAAACCGATGGTAATGAACATGTATTCCCATCTTTCGGGAGGTCGGGCTAACGTACAGCTGCTGCAGGAAGCAGCCGTGCGGGAGTTTGTAAAGATTCTTGATCGCTGCG AAGGCACAAAGGCAATCATTTGGGATGAGTCATTGGGTGGG CCGGT GGGGCTTGTGGCACGATACACGTT CCTCAAGGAGCACCACGTTACCAAGATGTATCCGCTCCGGTCGGAAGCGTGGACGGACATCGATGTGAAGAACATTATCTTCATAACACGCCCCCATCAAACGCTGATGGATTACATTGCCAACAACATTCACGAGGAGGAGCGGAAACGAAAAGTTTCTCGCAAAGAGTATTTCCTGTACTTTCTGCCGAAAAAATCCTTCCTGTGTGAAAAGCGGCTGCAAATCAAGGGCGTACACGGCAGTCTGTCCTACATTGGCGAGTTTCGCTGCGAGTTTTTCCCATTCGACAACGATCTGCTTTCGATGGAGCTGAAAGATGC]




>consensus_6426#0
CCGGTCAAAACGGGCATTTACGAGACCAGATAATTGAACAGATTTTAGCTAAAAGTGTAT
TGATAAAAACGAGTCGTGCATTAACTTAGTGCTAAAATGTGTTCTATTTACTTGATTTAC
CTCTAGTATTATTGTAATTCACAATTGGACTCACGCCGTTGTGCATACTTTTCCCTAAGG
ACAAAGGACAACAAACACTCCTCGTCATATCGAACACCTTTTTTCATAACAAACCGATGG
TAATGAACATGTATTCCCATCTTTCGGGAGGTCGGGCTAACGTACAGCTGCTGCAGGAAG
CAGCCGTGCGGGAGTTTGTAAAGATTCTTGATCGCTGCGAAGGCACAAAGGCAATCATTT
GGGATGAGTCATTGGGTGGGCCGGTGGGGCTTGTGGCACGATACACGTTCCTCAAGGAGC
ACCACGTTACCAAGATGTATCCGCTCCGGTCGGAAGCGTGGACGGACATCGATGTGAAGA
ACATTATCTTCATAACACGCCCCCATCAAACGCTGATGGATTACATCGCCAACAACATTC
ACGAGGAGGAGCGGAAACGAAAAGTTTCTCGCAAAGAGTATTTCCTGTACTTTCTGCCGA
AAAAATCTTTCCTGTGCGAAAAGCGGCTGCAAATCAAGGGCGTACACGGCAGTCTGTCCT
ACATTGGCGAGTTTCGCTGCGAGTTTTTCCCATTCGACAACGATCTGCTTTCGATGGAGC
TGAAAGATGC

consensusID : consensus_6426#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 715
fasta sequence

                              [CAAGACTCGCCCACGGTTTAACAAAGAGTATTTCCTGTACTTTCTGCCGAAGAAAATCTTTCCATGCTGTCGAAAAGCGGCTGCAAATCAAGGGGCTGTACACTGGCAGTCTGTCCTACATATGGCTGAGTTTCTGCTGCGAGGTTATTTCCCATTCGACAACGATCTGCTATTCGATGGNAGCTGAAAGATGCCTACAAAGAGATCTACCTCGNAGGGTGACACNGAGCAGTCTGCACCAGTCGGCGTGTGCGCTATGATCAGACGGTTNGCACGGAACATTTGTCATGGAGCGCACTTCCGCAAGTGTGTACGGAATCGGANTGGCTTACGCNGCAGCGCGTCTGGGGAGATGAGCTGAAACAGCGTTGACCGANGAGTGCACTGGGAGCATGTTGCTGAACCAGACGCATGAAGGGGTGTNCATCGCACCCAAGATTGATTCATACTCGCNNTCNGGGTCAGAACTGAGACTTGCATAGAGCNGTTGCTCGCCCANTGCCAAGCACTCAACCCGTTAACNGAAAAGAGTGCCTTGGACTTCCGGAANTGCACGGCAATAANTTTCNCCGAGGCCAAGTTCAAANCCAAAGTTACACCGCAAGCCAGGTACAAAGTTCCTTNGCCCGNCGCAGGGACAACATACNAGATTCCACAAGCACACAGTGGCAGAATAGCGCTCTAACTTCCTAACGGGGAAACGCCGCATAACAAC]

[+] EMBL AL697445             [CAAGACTCGCCCACGGTTTAACAAAGAGTATTTCCTGTACTTTCTGCCGAAGAAAATCTTTCCATGCTGTCGAAAAGCGGCTGCAAATCAAGGGGCTGTACACTGGCAGTCTGTCCTACATATGGCTGAGTTTCTGCTGCGAGGTTATTTCCCATTCGACAACGATCTGCTATTCGATGGNAGCTGAAAGATGCCTACAAAGAGATCTACCTCGNAGGGTGACACNGAGCAGTCTGCACCAGTCGGCGTGTGCGCTATGATCAGACGGTTNGCACGGAACATTTGTCATGGAGCGCACTTCCGCAAGTGTGTACGGAATCGGANTGGCTTACGCNGCAGCGCGTCTGGGGAGATGAGCTGAAACAGCGTTGACCGANGAGTGCACTGGGAGCATGTTGCTGAACCAGACGCATGAAGGGGTGTNCATCGCACCCAAGATTGATTCATACTCGCNNTCNGGGTCAGAACTGAGACTTGCATAGAGCNGTTGCTCGCCCANTGCCAAGCACTCAACCCGTTAACNGAAAAGAGTGCCTTGGACTTCCGGAANTGCACGGCAATAANTTTCNCCGAGGCCAAGTTCAAANCCAAAGTTACACCGCAAGCCAGGTACAAAGTTCCTTNGCCCGNCGCAGGGACAACATACNAGATTCCACAAGCACACAGTGGCAGAATAGCGCTCTAACTTCCTAACGGGGAAACGCCGCATAACAAC]




>consensus_6426#1
CAAGACTCGCCCACGGTTTAACAAAGAGTATTTCCTGTACTTTCTGCCGAAGAAAATCTT
TCCATGCTGTCGAAAAGCGGCTGCAAATCAAGGGGCTGTACACTGGCAGTCTGTCCTACA
TATGGCTGAGTTTCTGCTGCGAGGTTATTTCCCATTCGACAACGATCTGCTATTCGATGG
NAGCTGAAAGATGCCTACAAAGAGATCTACCTCGNAGGGTGACACNGAGCAGTCTGCACC
AGTCGGCGTGTGCGCTATGATCAGACGGTTNGCACGGAACATTTGTCATGGAGCGCACTT
CCGCAAGTGTGTACGGAATCGGANTGGCTTACGCNGCAGCGCGTCTGGGGAGATGAGCTG
AAACAGCGTTGACCGANGAGTGCACTGGGAGCATGTTGCTGAACCAGACGCATGAAGGGG
TGTNCATCGCACCCAAGATTGATTCATACTCGCNNTCNGGGTCAGAACTGAGACTTGCAT
AGAGCNGTTGCTCGCCCANTGCCAAGCACTCAACCCGTTAACNGAAAAGAGTGCCTTGGA
CTTCCGGAANTGCACGGCAATAANTTTCNCCGAGGCCAAGTTCAAANCCAAAGTTACACC
GCAAGCCAGGTACAAAGTTCCTTNGCCCGNCGCAGGGACAACATACNAGATTCCACAAGC
ACACAGTGGCAGAATAGCGCTCTAACTTCCTAACGGGGAAACGCCGCATAACAAC

consensusID : consensus_6426#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [GATCGCCCGAGGTATAAAACGAGTCATGCATTACTTAGTGCTAAATGTGTCTATTTACTTGATTTACCTCTAGTATTATGTAATTCACAATTGGACTCACGCCGTTGTGCATACTTTTCCCTAAGGACAAAGGACAACAAACACTCCTCGTCATATCGAACACCTTTTTCATAACAAACCGATGGTAATGAACATGTATTCCCATCTTTCGGGAGGTCGGGCTAACGTACAGCTGCTGCAGGAAGCAGCCGTACGGGAGTTTGTAAAGATTCTTGATCGCTGCGAAGGCACAAAGGCAATCATTTGGGATGAGTCATTGGGTGGGCCGGTGGGGCTTGTGGCACGATACACGTTCCTCAAGGAGCACCACGTTACCAAGATGTATCCGCTCCGGTCGGAAGCGTGGACGGACATCGATGTGAAGAACATTATCTTCATAACACGCCCCCATCAAACGCTGATGGATTACATTGCCAACAACATT]

[+] EMBL AL931616             [GATCGCCCGAGGTATAAAACGAGTCATGCATTACTTAGTGCTAAATGTGTCTATTTACTTGATTTACCTCTAGTATTATGTAATTCACAATTGGACTCACGCCGTTGTGCATACTTTTCCCTAAGGACAAAGGACAACAAACACTCCTCGTCATATCGAACACCTTTTTCATAACAAACCGATGGTAATGAACATGTATTCCCATCTTTCGGGAGGTCGGGCTAACGTACAGCTGCTGCAGGAAGCAGCCGTACGGGAGTTTGTAAAGATTCTTGATCGCTGCGAAGGCACAAAGGCAATCATTTGGGATGAGTCATTGGGTGGGCCGGTGGGGCTTGTGGCACGATACACGTTCCTCAAGGAGCACCACGTTACCAAGATGTATCCGCTCCGGTCGGAAGCGTGGACGGACATCGATGTGAAGAACATTATCTTCATAACACGCCCCCATCAAACGCTGATGGATTACATTGCCAACAACATT]




>consensus_6426#2
GATCGCCCGAGGTATAAAACGAGTCATGCATTACTTAGTGCTAAATGTGTCTATTTACTT
GATTTACCTCTAGTATTATGTAATTCACAATTGGACTCACGCCGTTGTGCATACTTTTCC
CTAAGGACAAAGGACAACAAACACTCCTCGTCATATCGAACACCTTTTTCATAACAAACC
GATGGTAATGAACATGTATTCCCATCTTTCGGGAGGTCGGGCTAACGTACAGCTGCTGCA
GGAAGCAGCCGTACGGGAGTTTGTAAAGATTCTTGATCGCTGCGAAGGCACAAAGGCAAT
CATTTGGGATGAGTCATTGGGTGGGCCGGTGGGGCTTGTGGCACGATACACGTTCCTCAA
GGAGCACCACGTTACCAAGATGTATCCGCTCCGGTCGGAAGCGTGGACGGACATCGATGT
GAAGAACATTATCTTCATAACACGCCCCCATCAAACGCTGATGGATTACATTGCCAACAA
CATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6426#0      -------------CCGGTCAA-AACGGGCATTTACGAGACCAGATAATTGAACAGATTTT 46
consensus_6426#2      ------------------------------------------------------------
consensus_6426#1      CAAGACTCGCCCACGGTTTAACAAAGAGTATTTCCTGTACTTTCTGCCGAAGAAAATCTT 60
                                                                                  

consensus_6426#0      AGCTAAAAGTGTATTGATAAAAACGAGTCGTGCATTAACTTAGTGCTAAAATGTGTTCTA 106
consensus_6426#2      ----GATCGCCCGAGGTATAAAACGAGTCATGCATTA-CTTAGTGCTAAA-TGTGT-CTA 53
consensus_6426#1      TCCATGCTGTCGAAAAGCGGCTGCAAATCAAGGGGCTGTACACTGGCAGTCTGTCCTACA 120
                              *              * * **  *         * **  *   ***     *

consensus_6426#0      TTTACTTGATTTACCTCTAGTATTATTGTAATTCACAATTGGACTCACGCCGTTGTGCAT 166
consensus_6426#2      TTTACTTGATTTACCTCTAGTATTAT-GTAATTCACAATTGGACTCACGCCGTTGTGCAT 112
consensus_6426#1      TATGGCTGAGTT---TCTGCTGCGAGGTTATTTCCCATTCGACAACGATCTGCTATTCG- 176
                      * *   *** **   ***  *   *   ** *** ** * *    *   * * * * *  

consensus_6426#0      ACTTTTCCCTAAGGACAAAGGACAACAAACACTCCTCGTCATATCGAACACCTTTTTTCA 226
consensus_6426#2      ACTTTTCCCTAAGGACAAAGGACAACAAACACTCCTCGTCATATCGAACACCTTTTT-CA 171
consensus_6426#1      ATGGNAGCTGAAAGATGCCTACAAAGAGATCTACCTCGNAGGGTGACACNGAGCAGTCTG 236
                      *      *  ** **        ** * *    *****     *   **       *   

consensus_6426#0      TAACAAACCGATGGTAATGAACATGTATTCCCATCTTTCGGGAGGTCGGGCTAACGTACA 286
consensus_6426#2      TAACAAACCGATGGTAATGAACATGTATTCCCATCTTTCGGGAGGTCGGGCTAACGTACA 231
consensus_6426#1      CACCAG-TCGGCG--TGTGCGC-TATGATCAGACGGTTNGCACGGAACATTTGTCATGGA 292
                       * **   **  *    **  * * *  **  *   ** *   **      *  * *  *

consensus_6426#0      GC-TGCTGCAGGAAGCAGCCGTGCGGGAGTTTGTAAAGATTCTTGATCGCTGCGAAGGCA 345
consensus_6426#2      GC-TGCTGCAGGAAGCAGCCGTACGGGAGTTTGTAAAGATTCTTGATCGCTGCGAAGGCA 290
consensus_6426#1      GCGCACTTCCGCAAGTG--TGTACGGAA-TCGGANTGGCTTACGCNGCAGCGCGTCTGGG 349
                      **   ** * * ***     ** *** * *  *    * **      *   ***   *  

consensus_6426#0      CAAAGGCAATCATTTGGGATGAGTCATTGGGTGGGCCGGTGGGGCTTGTGGCACGAT-AC 404
consensus_6426#2      CAAAGGCAATCATTTGGGATGAGTCATTGGGTGGGCCGGTGGGGCTTGTGGCACGAT-AC 349
consensus_6426#1      GAGATGAGCTGAAACAGCGTTGACCGANGAGTGCACTGG--GAGCATGTTGCTGAACCAG 407
                       * * *   * *    *  *    *   * ***  * **  * ** *** **   *  * 

consensus_6426#0      ACGTTCCTCAAGGAGCACCACGTTACCAAGATGTATCCGCTCCGGTCGGAAGCGT--GGA 462
consensus_6426#2      ACGTTCCTCAAGGAGCACCACGTTACCAAGATGTATCCGCTCCGGTCGGAAGCGT--GGA 407
consensus_6426#1      ACGCATGAAGGGGTGTNCATCGCACCCAAGATTGATTCATACTCGCNNTCNGGGTCAGAA 467
                      ***        ** *  *  **   *******  ** *   *  *      * **  * *

consensus_6426#0      CGGACATCGATGTGAAGAACATTATCTTCATAACACGCCCCCATCAAAC-GCTGATGGAT 521
consensus_6426#2      CGGACATCGATGTGAAGAACATTATCTTCATAACACGCCCCCATCAAAC-GCTGATGGAT 466
consensus_6426#1      CTGAGACTTGCATAGAGCN-GTTGCTCGCCCANTGCCAAGCACTCAACCCGTTAACNGAA 526
                      * ** *      *  **    **     *  *   *    *  **** * * * *  ** 

consensus_6426#0      TACATCGCCAACAACATTCACGAGGAGGAGCGGAAACGAAAAGTTTCTCGCAAAGAGTAT 581
consensus_6426#2      TACATTGCCAACAACATT------------------------------------------ 484
consensus_6426#1      AAGAGTGCCTTGGACTTC--CGGAANTGCACGGCAATAANTTTCNCCGAGGCCAAGTTCA 584
                       * *  ***    ** *                                           

consensus_6426#0      TTCCTGTACTTTCTGCCGAAAAAATCTTTCCTGTGCGAAAAGCGGCTGCAAATCAAGGGC 641
consensus_6426#2      ------------------------------------------------------------
consensus_6426#1      AANCCAAAGTTACACCGCAAGCCAGGTACAAAGTTCCTTNGCCCGNCGCAGGGACAACAT 644
                                                                                  

consensus_6426#0      GTACACGGCAGTCTGTCCTACATTGGCGAGTTTCGCTGCGAGTTTTTCCCATTCGACAAC 701
consensus_6426#2      ------------------------------------------------------------
consensus_6426#1      ACNAGATTCCACAAGCACACAGTGGCAGAATAGCGCTCTAACTTCCTAACGGGGAAACGC 704
                                                                                  

consensus_6426#0      GATCTGCTTTCGATGGAGCTGAAAGATGC 730
consensus_6426#2      -----------------------------
consensus_6426#1      CGCATAACAAC------------------ 715