These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1161 fasta sequence [CCTGTTGCTGTGTGACGTCATCGCCTGGATAGTGATATTCGGTTGCATCGCCAAAGGGGTGCAATCGGTCGGTAAGGTCGTTTACTGTACTGCCACCTTTCCGTTCGCGATCCTGGCGGTGTTACTTGTGCGCGGTATCACGCTTCCCGGTGCGCTGGAGGGCATCAAGTTCTACATAATGCCCCAGTGGAGCCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCG-AGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATAC-TTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTCACCGCTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTTTTCTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATTTCGGTGATACTGGTTTGTATCGTTGAGGTTATTACCGTCGGTTGGATCTACGGGTGTGAGCAGTTCGTGCGCGACGTCGAGTTCATGATCGATCGCAAGGTGGAACGGTTTTGGATAGTTTCATGGAAGTACATCACACCGATCGTGCTGACTTTTATTTTCACTACAACGATTGTGTACAACACTGAGGTATCGTACAATGGCTTTTCGTATCCACGGTGGGCTATTGGAGTCGGGTGGGCCAGCTGCTTGGTGTCGATACTTTGCATTTCAGTGTTTGCGTCTTACAAGCTCCTTCACACGAAGGGTTCATTGACAAAGCGTTTTAAAACCCAACTCAAAGCACAGGATTGGGGCCCTGCCGATGATGAACTGCGTGCATTGTGGAGTGACAGTGTTGCATTACGTTCAGTGCGTTAAATAAACGATTT] [+] EMBL BX623930 [CCTGTTGCTGTGTGACGTCATCGCCTGGATAGTGATATTCGGTTGCATCGCCAAAGGGGTGCAATCGGTCGGTAAGGTCGTTTACTGTACTGCCACCTTTCCGTTCGCGATCCTGGCGGTGTTACTTGTGCGCGGTATCACGCTTCCCGGTGCGCTGGAGGGCATCAAGTTCTACATAATGCCCCAGTGGAGCCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAAGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTANGATACTTTTTCACATCAAA ] [+] EMBL BM639935 [ ccgGTTCTACATAATGCCCCAGTGGAGCCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCG AGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATAC TTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTCACCGCTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTTTTCTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATTTCGGTGATACTGGTTTGTATCGTTGAGGTTATTACCGTCGGTTGGATCTACGGGTGTGAGCAGTTCGT ] [+] EMBL BX610135 [ TCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATAC TTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTCACCGCTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTTTTCTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATTTCGGTGATACTGGTTTGTATCGTTGAGGTTATTACCGTCGGTTGGATCTACGGGTGTGAGCAGTTCGTGCGCGACGTCGAGTTCATGATCGATCGCAAGGTGGAACGGTTTTGGATAGTTTCATGGAAGTACATCACACCGATCGTGCTGACTTTTATTTTCACTACAACGATTGTGTACAACACTGAGGTATCGTACAATGGCTTTTCGTATCCACGGTGGGCTATTGGAGTCGGGTGGGCCAGCTGCTTGGTGTCGATACTTTGCATTTCAGTGTTTGCG ] [+] EMBL BX617150 [ GATTGTGTACAACACTGAGGTATCGTACAATGGCTTTTCGTATCCACGGTGGGCTATTGGAGTCGGGTGGGCCAGCTGCTTGGTGTCGATACTTTGCATTCCAGTGTTTGCGTCTTACAAGCTCCTTCACACGAAGGGTTCATTGACAAAGCGTTTTAAAACCCAACTCAAAGCACAGGATTGGGGCCCTGCCGATGATGAACTGCGTGCATTGTGGAGTGACAGTGTTGCATTACGTTCAGTGCGTTAAATAAACGATTT] consensusID : consensus_6435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [CCCCGAGTTNAATGCCCAGTGGAGCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTACACCGTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTANNATACTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATT] [+] EMBL AL692247 [CCCCGAGTTNAATGCCCAGTGGAGCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTTCTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTATAATCAGTTCAAAAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACTGGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACAGGTCTTCCCGTAGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAGTATGCTTCCGCTGTACACCGTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCGGCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTACCGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTANNATACTTCTTTTCCTGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGTATTCGGGGTCCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6435#0 CCTGTTGCTGTGTGACGTCATCGCCTGGATAGTGATATTCGGTTGCATCGCCAAAGGGGT 60 consensus_6435#1 ------------------------------------------------------------ consensus_6435#0 GCAATCGGTCGGTAAGGTCGTTTACTGTACTGCCACCTTTCCGTTCGCGATCCTGGCGGT 120 consensus_6435#1 ------------------------------------------------------------ consensus_6435#0 GTTACTTGTGCGCGGTATCACGCTTCCCGGTGCGCTGGAGGGCATCAAGTTCTACATAAT 180 consensus_6435#1 ------------------------------------------CCCCGAGTTN-----AAT 13 * * **** *** consensus_6435#0 GCCCCAGTGGAGCCAGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTT 240 consensus_6435#1 GCCC-AGTGGAGC-AGCTGCTGAATCTGCGCGTTTGGGCCGATGCAGCGATCCAGATTTT 71 **** ******** ********************************************** consensus_6435#0 CTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTATAATCAGTTCAA 300 consensus_6435#1 CTACTCCCTTGGACCGGGCTGGGGTGGCATTTTGAATATGGCGAGCTATAATCAGTTCAA 131 ************************************************************ consensus_6435#0 AAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACT 360 consensus_6435#1 AAACAACACCAAACTCGACTCGATCGTCATACCGATCGTTAACTGTGGTACGAGCATACT 191 ************************************************************ consensus_6435#0 GGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACAGGTCTTCCCGT 420 consensus_6435#1 GGCCGGGTTTGTGGTGTTCTCTGTGCTAGGATACTTTTCACATCAAACAGGTCTTCCCGT 251 ************************************************************ consensus_6435#0 AGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAG 480 consensus_6435#1 AGCGTCGGCTGCCACTGGCGGTCCGGGATTGGCGTTCATCACGTACCCGGAAGCGATCAG 311 ************************************************************ consensus_6435#0 TATGCTTCCGCTGT-CACCGCTGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCG 539 consensus_6435#1 TATGCTTCCGCTGTACACCG-TGTGGGCCTGTCTGTTCTTCAGTATGCTATTTTTCCTCG 370 ************** ***** *************************************** consensus_6435#0 GCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTAC 599 consensus_6435#1 GCGTTGACAGTATGTTCGTTCAAATCGAAGCGATCGTTTCGTCGGTGATGGACGTGTTAC 430 ************************************************************ consensus_6435#0 CGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTTTT---CTTCTTTTCC 656 consensus_6435#1 CGAGGTTACGCCCAATGAAGCTCCAGGTAACGGCCGGAACTTGTANNATACTTCTTTTCC 490 ******************************************** ********** consensus_6435#0 TGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGT 716 consensus_6435#1 TGCTCTCTATCGCTTGCGTGACACAGGGTGGAATGTACTTGGTGCAGCTGCTCGACTGGT 550 ************************************************************ consensus_6435#0 ATTCGGGGTCCATTTCGGTGATACTGGTTTGTATCGTTGAGGTTATTACCGTCGGTTGGA 776 consensus_6435#1 ATTCGGGGTCCATT---------------------------------------------- 564 ************** consensus_6435#0 TCTACGGGTGTGAGCAGTTCGTGCGCGACGTCGAGTTCATGATCGATCGCAAGGTGGAAC 836 consensus_6435#1 ------------------------------------------------------------ consensus_6435#0 GGTTTTGGATAGTTTCATGGAAGTACATCACACCGATCGTGCTGACTTTTATTTTCACTA 896 consensus_6435#1 ------------------------------------------------------------ consensus_6435#0 CAACGATTGTGTACAACACTGAGGTATCGTACAATGGCTTTTCGTATCCACGGTGGGCTA 956 consensus_6435#1 ------------------------------------------------------------ consensus_6435#0 TTGGAGTCGGGTGGGCCAGCTGCTTGGTGTCGATACTTTGCATTTCAGTGTTTGCGTCTT 1016 consensus_6435#1 ------------------------------------------------------------ consensus_6435#0 ACAAGCTCCTTCACACGAAGGGTTCATTGACAAAGCGTTTTAAAACCCAACTCAAAGCAC 1076 consensus_6435#1 ------------------------------------------------------------ consensus_6435#0 AGGATTGGGGCCCTGCCGATGATGAACTGCGTGCATTGTGGAGTGACAGTGTTGCATTAC 1136 consensus_6435#1 ------------------------------------------------------------ consensus_6435#0 GTTCAGTGCGTTAAATAAACGATTT 1161 consensus_6435#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||