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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 978 fasta sequence
[ATCGCCCGAGGGCAAAGCTCCATTTGTTTCAACCTCGAACAGCAATAGGATGATGATTGAGGTGAAGCAACGCTTGTTGTTATGAAAGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCT-GGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTGAGGCAGCTCTACCCGCACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACAACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCAGACGTTCATCGACACGATCCTGTCGGACGATGGGA-TGCGCACGTGCCAGGCGGTGCGGGACTTTTTCTGCCTCGACGAACCACCGTCCTACTCGGAGAGCATGGAGGAGTCGAGGGTTATCTTTGAGGCGCAGGAGGAAACGATAGCACAGCTAAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGGCGCTGCAAACGAAGCTCGCCACCGAGCTGAACCGCAATGCGATCTTAACGGACGTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATGAAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCATTACCATCGTCACCCTTCAATCCCTTCAACCTCCGTCCGCCGCGGACATCTATAGTTTTAGCTTGTAAGCGTTTACAGCCTGTAAGACTGCCGCCGCACATTCTGTGGATATGCTCGAAAGTTCGAAACTTGTGTTGCAGTAAAACAAAATTGGTAGTTAAAATAATCAAACTATAATCCCCAAAAAGCAAATACACACAGTACACATTCGTGTCTTTCTTACCGTAACCATCAGCGCTAACGGACCGCCGTAGATGATGAGACAGAAGCCGCTGATCATAATCATGGTAAAGATGCCACGTATCACCCAGTTCTTCCATCTGAAAGGGGGGAAGGAGGAA]
[+] EMBL AL931765 [ATCGCCCGAGGGCAAAGCTCCATTTGTTTCAACCTCGAACAGCAATAGGATGATGATTGAGGTGAAGCAACGCTTGTTGTTATGAAAGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCT GGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTGAGGCAGCTCTACCCGCACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACAACTTTAGCAGCGGCTTCATCGACAACCGGATACA GGGCTGCAGACGTTCATCGACACGATCCTGTCGGACGATGGGA TGCGCACGTGCCAGGCGGTGCGGGACTTTTTCTGCCTGGACGAACCGCC TCCTACTCGGAGAGTATGGAAGAGTCGAGGGTTATCTTTGAGGCGCAGGAGGAAACGATAGCACAGCTCAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGGCGCTGCAAACGAA ]
[+] EMBL CNS08ECL [ TCAACCTCGAACAGCAATAGGATGATGATTGAGGTGAAGCAACGCTTGTTGTTATGAAAGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCT GGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTGAGGCAGCTCTACCCGCACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACAACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCAGACGTTCATCGACACGATCCTGTCGGACGATGGGATTGCGCACGTGCCAGGCGGTGCGGGACTTTTTCTGCCTCGACGAACCACCGTCCTACTCGGAGAGCATGGAGGAGTCGAGGGTTATCTTTGAGGCGCAGGAGGAAACGATAGCACAGCTAAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGGCGCTGCAAACGAAGCTCGCCACCGAGCTGAACCGCAATGCGATCTTAACGGACGTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATGAAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCATTACCATCGTCACCCTTCAATCCCTTCAACCTCCGTCCGCCGCGGACATCTATAGTTTTAGCTTGTAAGCGTTTACAGCCTGTAAGACTGCCGCCGCACATTCTGTGGATATGCTCGAAAGTTCGAAACTTGTGTTGCAGTAAAACAAAATTGGTAGTTAAAATAATCAAACTATAATCCCCAAAAAGCAAATACACACAGTACACATTCGTGTCTTTCTTACCGTAACCATCAGCGCTAACGGACCGCCGTAGATGATGAGACAGAAGCCGCTGATCATAATCATGGTAAAGATGCCACGTATCACCCAGTTCTTCCATCTGAAAGGGGGGAA ]
[-] EMBL CNS08ECM [ ACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCTGGGTG TGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTGAGGCAGCTCTACCCGCACTGTGGTCTGGTG TGCCGCGGAAGAAATGGTTCGGCGACAACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCAGACGTTCATCGACACGATCCTGTCGGACGATGGGA TGCGCACGTGCCAGGCGGTGCGGGACTTTTTCTGCCTCGACGAACCACCGTCCTACTCGGAGAGCATGGAGGAGTCGAGGGTTATCTTTGAGGCGCAGGAGGAAACGATAGCACAGCTAAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGGCGCTGCAAACGAAGCTCGCCACCGAGCTGAACCGCAATGCGATCTTAACGGACGTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATGAAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCATTACCATCGTCACCCTTCAATCCCTTCAACCTCCGTCCGCCGCGGACATCTATAGTTTTAGCTTGTAAGCGTTTACAGCCTGTAAGACTGCCGCCGCACATTCTGTGGATATGCTCGAAAGTTCGAAACTTGTGTTGCAGTAAAACAAAATTGGTAGTTAAAATAATCAAACTATAATCCCCAAAAAGCAAATACACACAGTACACATTCGTGTCTTTCTTACCGTAACCATCAGCGCTAACGGACCGCCGTAGATGATGAGACAGAAGCCGCTGATCATAATCATGGTAAAGATGCCACGTATCACCCAGTTCTTCCATCTGAAAGGGGGGAAGGAGGAA]
consensusID : consensus_6437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 888 fasta sequence
[TCGGNCACGAGGTGNNAAACCCACACATCGCCGCCCGCACTTGAGACGGTCCAGCTCGTATCCGACACTGCTGTCCAGCAAACGCGCACGGAAGCAACAGCTGCGTCCGGTTCGATCGGAAAGTGATTTGCGTGTTCCAGGCAGTGTCGATCGTACTGGTGGTGCTACTGGTGGTGGTGGTGATGCTAGTGCCCTCCTGCCCGGAAGTGGGAACAGTTTCAGCACCAACAATCTCTACCTCGGTGCCAAATCGGAGGTGTGTTTGAAGACGCTCGCCGTGAAGAACACGGTAGTGCCAGCAGTAGGACTCCTCCGACCTGTCAGTAGTGGTGTGATGCTGCAATCGGCGCCGCCACTCGGGTCGGGTGGTAGTGTGCGGAGCGGTGGCACCGGATCGAGCACCGGATCACGCCGGCTGTACGAAAGCCGCCGGACGTCGGAGCTGAGCAGCAGCGATCTTGGCCCGAGCAAGTCCGAGATGCACCTGAAGGTGAACAGCGGCGCCGTGCGCATTCCGATCGTCGGCTACGAGGTGATGGAGGAGCGGGCCCGCTTCACGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCTGGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTTGAGGGCAGCTCTACCCGCACTGTGGTTCTGGTGCTGCCGCGGAAAGGAACAATTGGGTTCCGGGNCGGAACCACACTTTTAGCACAGCGGGGTTCATCGAACAACCCGGNATACACGGGGGCNTGACAGACACNTTCATCTGAACACGAGAACTTGTTCGAACCAATGGGGATGCGCCCGTGCCAAGCCGGTCCGGGACTTTTTCTGCCTNGGAACGACCGGGCCTCCTTACTNGG]
[+] EMBL BX469549 [TCGGNCACGAGGTGNNAAACCCACACATCGCCGCCCGCACTTGAGACGGTCCAGCTCGTATCCGACACTGCTGTCCAGCAAACGCGCACGGAAGCAACAGCTGCGTCCGGTTCGATCGGAAAGTGATTTGCGTGTTCCAGGCAGTGTCGATCGTACTGGTGGTGCTACTGGTGGTGGTGGTGATGCTAGTGCCCTCCTGCCCGGAAGTGGGAACAGTTTCAGCACCAACAATCTCTACCTCGGTGCCAAATCGGAGGTGTGTTTGAAGACGCTCGCCGTGAAGAACACGGTAGTGCCAGCAGTAGGACTCCTCCGACCTGTCAGTAGTGGTGTGATGCTGCAATCGGCGCCGCCACTCGGGTCGGGTGGTAGTGTGCGGAGCGGTGGCACCGGATCGAGCACCGGATCACGCCGGCTGTACGAAAGCCGCCGGACGTCGGAGCTGAGCAGCAGCGATCTTGGCCCGAGCAAGTCCGAGATGCACCTGAAGGTGAACAGCGGCGCCGTGCGCATTCCGATCGTCGGCTACGAGGTGATGGAGGAGCGGGCCCGCTTCACGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCTGGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTTGAGGGCAGCTCTACCCGCACTGTGGTTCTGGTGCTGCCGCGGAAAGGAACAATTGGGTTCCGGGNCGGAACCACACTTTTAGCACAGCGGGGTTCATCGAACAACCCGGNATACACGGGGGCNTGACAGACACNTTCATCTGAACACGAGAACTTGTTCGAACCAATGGGGATGCGCCCGTGCCAAGCCGGTCCGGGACTTTTTCTGCCTNGGAACGACCGGGCCTCCTTACTNGG]
consensusID : consensus_6437#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence
[GATCGTCGGCTACGAGGTGATGGAGGAGCGGGCCCGCTTCACGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCTGGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTGAGGCAGCTCTACCCGCACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACAACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCAGACGTTCATCGACACGATCCTGTCGGACGATGGGATGCGCACGTGCCAGGCGGTGCGGGACTTTTTCTGCCTGGACGAACCGCCCTCCTACTCGGAGAGTATGGAAGAGTCGAGGGTTATCTTTGAGGCGCAGGAGGAAACGATAGCACAGCTCAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGGCGCTGCAAACGAAGCTCGCCACCGAGCTGAACCGCAATGCGATCTTAACTGACGTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATGAAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCAT]
[+] EMBL BX623897 [GATCGTCGGCTACGAGGTGATGGAGGAGCGGGCCCGCTTCACGATATTCAAACTGCGCATCGAAAACAGCATTTCGCACACCTGCTGGCTGGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCTGAGGCAGCTCTACCCGCACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACAACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCAGACGTTCATCGACACGATCCTGTCGGACGATGGGATGCGCACGTGCCAGGCGGTGCGGGACTTTTTCTGCCTGGACGAACCGCCCTCCTACTCGGAGAGTATGGAAGAGTCGAGGGTTATCTTTGAGGCGCAGGAGGAAACGATAGCACAGCTCAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGGCGCTGCAAACGAAGCTCGCCACCGAGCTGAACCGCAATGCGATCTTAACTGACGTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATGAAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6437#0 ATCGCCCGAGGGCAAAGCTCCATTTGTTTCAACCTCGAACAGCAATAGGATGATGATTGA 60
consensus_6437#2 ------------------------------------GATCGTCGGCTACGAGGTGATGGA 24
consensus_6437#1 --------------------------------------TCGGNCACGAGGTGNNAAACCC 22
* * *
consensus_6437#0 GGTGAAGCAACGCTTGTTGTTATGAAAGATATTCAAACTGCGCATCGAAAACAGCATTTC 120
consensus_6437#2 GGAGCGGGCCCGCTTC---------ACGATATTCAAACTGCGCATCGAAAACAGCATTTC 75
consensus_6437#1 A-CACATCGCCGCCCGCACTT----GAGACGGTCCAGCT-CGTATCCGACACTGCTGTCC 76
*** ** ** * ** ** *** * ** ** * *
consensus_6437#0 GCACACCTGCTGGCTGGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCT 180
consensus_6437#2 GCACACCTGCTGGCTGGTGCTGCGCCGGTACACCGACTTTGTCCGGCTGAACAACAAGCT 135
consensus_6437#1 A-----------GCAAACGC-GCACGGAAGCAACAGCTGCGTCCGGTTCGATCGGAAAGT 124
** ** ** * * ** * ** ****** * * ** *
consensus_6437#0 GAGGCAGCTCTACCCG-CACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACA 239
consensus_6437#2 GAGGCAGCTCTACCCG-CACTGTGGTCTGGTGCTGCCGCGGAAGAAATGGTTCGGCGACA 194
consensus_6437#1 GATTTGCGTGTTCCAGGCAGTGTCGATCGTACTGGTGGTGCTACTGGTGGT--GGTGGTG 182
** * * ** * ** *** * * * * * * **** ** *
consensus_6437#0 ACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCA--GACGTTCATCGACAC 297
consensus_6437#2 ACTTTAGCAGCGGCTTCATCGACAACCGGATACAGGGGCTGCA--GACGTTCATCGACAC 252
consensus_6437#1 ATGCTAGTGCCCTCCTGCCCGG-AAGTGGGAACAGTTTCAGCACCAACAATCTCTACCTC 241
* *** * * * ** ** ** **** * *** ** ** * *
consensus_6437#0 GATCCTG--TCGGACGATGGGATGCGCACGT--GCCAGGCGGTGCGGGACTTTTTCTGCC 353
consensus_6437#2 GATCCTG--TCGGACGATGGGATGCGCACGT--GCCAGGCGGTGCGGGACTTTTTCTGCC 308
consensus_6437#1 GGTGCCAAATCGGAGGTGTGTTTGAAGACGCTCGCCGTGAAGAACACGGTAGTGCCAGCA 301
* * * ***** * * ** *** *** * * * * * * **
consensus_6437#0 TCGACGAACCACCGTCCTACTCGGAGAGCATGGAGGAGTCGAGGGTTATCTTTGAGGCGC 413
consensus_6437#2 TGGACGAACCGCCCTCCTACTCGGAGAGTATGGAAGAGTCGAGGGTTATCTTTGAGGCGC 368
consensus_6437#1 GTAGGACTCCTCCGACCTGTCAGTAGTG---GTGTGATGCTGCAATCGGCGCCGCCACTC 358
** ** *** * ** * * ** * * * * * *
consensus_6437#0 AGGAGGAAACGATAGCACAGCTAAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGG 473
consensus_6437#2 AGGAGGAAACGATAGCACAGCTCAAGCAGCAACTCCAAGCCAAAGAGGATATGGTACAGG 428
consensus_6437#1 GGGTCGGG-TGGTAGTGTG--CGGAGCGGTGGCACCGGATCGAGCACCGGATCACGCCGG 415
** * * *** *** * * ** * * * ** * **
consensus_6437#0 CGCTGCAAACGAAGCTCGCCACCG-AGCTGAACCGCAATG----CGATCTTAACGGA--C 526
consensus_6437#2 CGCTGCAAACGAAGCTCGCCACCG-AGCTGAACCGCAATG----CGATCTTAACTGA--C 481
consensus_6437#1 CTGTACGAAAGCCGCCGGACGTCGGAGCTGAGCAGCAGCGATCTTGGCCCGAGCAAGTCC 475
* * * ** * ** * * ** ****** * *** * * * * * *
consensus_6437#0 GTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATG 586
consensus_6437#2 GTTGTGCGGAACAGTGTGGAAAATTGTGCCAAATGTTCAAAGACTGTCGATCAGCTGATG 541
consensus_6437#1 GAGATGCACCTGAAGGTGAACAGCGGCGCCGTGCGCATTCCGATCGTCGGCTACGAGGTG 535
* *** * *** * * * *** * ** **** * * **
consensus_6437#0 AAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCATTACCATCG 646
consensus_6437#2 AAAGAGTCCGTCTACAAGTAGTGCGAGAGAGCGAGAGATCATCGTTTACCAT-------- 593
consensus_6437#1 ATGGAGGA-GCGGGCCCGCTTCACGATATTCAAACTGCGCATCGAA-AACAGCATTTCGC 593
* *** * * * *** * * * ***** * **
consensus_6437#0 TCACCCTTCAATCCCTTCAACCTCCGTCCGCCGCGGACATCTATAGTTTTAGCTTGTAAG 706
consensus_6437#2 ------------------------------------------------------------
consensus_6437#1 ACACCTGCTGGCTGGTGCTGCGCCGGTACACCG---ACTTTGTCCGGCTGAACA-ACAAG 649
consensus_6437#0 CGTTTACAGCCTGTAAGACTGCCGCCGCACATTCTGTGGATATGCTCGAAAGTTCGAAAC 766
consensus_6437#2 ------------------------------------------------------------
consensus_6437#1 C--TTGAGGGCAGCTCTACCCGCACTGTG-GTTCTGGTGCTGCCGCGGAAAGGAACAATT 706
consensus_6437#0 TTGTGTTGCAGTAAAACAAAATTGGTAGTTAAAATAATCAAACTATAATCCCCAAAAAGC 826
consensus_6437#2 ------------------------------------------------------------
consensus_6437#1 GGGTTCCGGGNCGGAACCACACTTTTAGCACAGCGGGGTTCATCGAACAACCCGGNATAC 766
consensus_6437#0 AAATACACACAGTACACATTCGTGTCTTTCTTACCGTAACCATCAGCGCTAACGGACCGC 886
consensus_6437#2 ------------------------------------------------------------
consensus_6437#1 ACGGGGGCNTGACAGACACNTTCATCTGAACACGAGAACTTGTTCGAACCAATGGGGATG 826
consensus_6437#0 CGTAGATGATGAGACAGAAGCCGCTGATCATAATCATGGTAAAGATGCCACGTATCACCC 946
consensus_6437#2 ------------------------------------------------------------
consensus_6437#1 CGCCCGTGCCAAGCCGGTCCGGGACTTTTTCTGCCTNGGAACGACCGGGCCTCCTTACTN 886
consensus_6437#0 AGTTCTTCCATCTGAAAGGGGGGAAGGAGGAA 978
consensus_6437#2 --------------------------------
consensus_6437#1 GG------------------------------ 888
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||