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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1432 fasta sequence
[AAATTACTTTGTGTTTATTGGTAATTATACTGAAAAAAGATTCGTTTTATTTCGTGATTAATAATTACTACATCTGTTCATTGTACTGTAGATTCCTGAACACTAGAACACACAGTCGTTGCCACCAGACGTCTGGTCTGGTGAAGTAATGTGCTGTTATCGTTAAATATCTTACCATTAATGTATGTAATCTACCTGTAGAGGTAGACGTTTTCATAAAACGAACAAAAATACATTCAAAGAAACGATAACTCCAGAAGATTTGCATCGCCACGTGACGTGAACCCTACAAACCGGTGGTCATTATACGAAAAAGATCAAACGAACGTTAACTGGACAAACAAGCAATTATTAAATGCTTCACTGGAATATTAAAAAAATAATTCGAACAAAAATCTCAAAACGTAAGTAATCGATCCAAGGAACCCGACCTGACAACTGTTGTCAGCTCTTTAACAGGGCATGTCTACTTGCGACGGTGCACTTTCCCACCGTAGCGCACCACGAACGCATTCACGTTGAATTTACGCTTGCATCCGTCATAGTTCATGTACCGAATTTTACCAAAGATTTCGCGCTCCTTCCAGCCCTGATCGTGGATGCCCGCGCATCGACCACATGCAACCGACGTACCCGTTCGGATCGCGCCCATCCAGACTGTAGCGATCGTTCAGATAGATCGCCGTCTCAAGCGCTTCCTCGGGCGTTTTCGTCCACTCCAGGATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGCCCTCC-TTCACCATCTGCAGCTGGGCCGAGTTCCACAGATCGTCATGCGTTTTGGCCGTCTCCAACTCCTCCCGGCTGTAGCAGTACACCCGCTTGTCCTTCCGATGGTCGTCCAGCGTTTTGCGGGCCCAATCGTACGCACCCTGCATTGTTGTCGTAGTTTTTTTTTTTTGTTTTTAAAGTTATCCGACAGCTCCCGGCGCACGATCGCCTCCTCGCAGAACGAGGCCACGCTTTCGCTGTACCGCTTGCCGTGCTTCTTCACCGTCAGTACTGCCCGCTGGACCGCGATCTGGCCGAAGTGAAACCAGGGCGACAGGTTCGAGAGCGCATTTTCGGTCGGATCGTTCCGTTTGTCGTTGAATTTGCCCAACCGCTTCTCGACAAAGGTCTGCAGCGTCTTCACGCCACCGGTGTACCCCGGCGTGGCCCACTCGACAGCCTCCACCGTACGGTCCACCTGCAGCGTGTCCAGCACCTGCGTCCAGTTGATCGGATCCGCCTCAAAGTTGGCCGTGAACGGATGCTTCACCAACGGCGGGAACGGTGTCAGGTACGTGGGCAAATTTTTGTTCACCTTCGTGCGAATGGTACGGGCCGCATACTCCAGCTTGTCGGAGGTGACCCACACCGGCACAATGTTGTGCGCATCCGGACGCGTGGGCGG]
[+] EMBL CNS093LR [AAATTACTTTGTGTTTATTGGTAATTATACTGAAAAAAGATTCGTTTTATTTCGTGATTAATAATTACTACATCTGTTCATTGTACTGTAGATTCCTGAACACTAGAACACACAGTCGTTGCCACCAGACGTCTGGTCTGGTGAAGTAATGTGCTGTTATCGTTAAATATCTTACCATTAATGTATGTAATCTACCTGTAGAGGTAGACGTTTTCATAAAACGAACAAAAATACATTCAAAGAAACGATAACTCCAGAAGATTTGCATCGCCACGTGACGTGAACCCTACAAACCGGTGGTCATTATACGAAAAAGATCAAACGAACGTTAACTGGACAAACAAGCAATTATTAAATGCTTCACTGGAATATTAAAAAAATAATTCGAACAAAAATCTCAAAACGTAAGTAATCGATCCAAGGAACCCGACCTGACAACTGTTGTCAGCTCTTTAACAGGGCATGTCTACTTGCGACGGTGCACTTTCCCACCGTAGCGCACCACGAACGCATTCACGTTGAATTTACGCTTGCATCCGTCATAGTTCATGTACCGAATTTTACCAAAGATTTCGCGCTCCTTCCAGCCCTGATCGTGGATGCCCGCGCATCGACCACATGCAACCGACGTACCCGTTCGGATCGCGCCCATCCAGACTGTAGCGATCGTTCAGATAGATCGCCGTCTCAAGCGCTTCCTCGGGCGTTTTCGTCCACTCCAGGATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGCCCTCC TTCACCATCTGCAGCTGGGCCGAGTTCCACAGATCGTCATGCGTTTTGGCCGTCTCCAACTCCTCCCGGCTGTAGCAGTACACCCGCTTGTCCTTCCGATGGTCGTCCAGCGTTTTGCGGGCCCAATCGTACGCACCCTGCATTGTTGTCGTAGTTTTTTTTTTTTGTTTTTAAAGTTATCCG ]
[-] EMBL BM584172 [ TGCGCAGGAAGCCGTGCATCTTGCCCTCCTTTCACCATCTGCAGCTGGGCCGAGTTCCACAGATCGTCATGCGTTTTGGCCGTCTCCAACTCATCCCGGCTGTAGCAGTACACCCGCTTGTCCTTCCGATGGTCGTCCAGCGTTTTGCGGGCCCAATCGTACGCACCCTGCA GGTTGTCGTAG TTTTTGTTGTGGAAGCAAAAGTTATCCGACAGCTCCCGGCGCACGATCGCCTCCTCGCAGAACGAGGCCACGCTTTCGCTGTACCGCTTGCCGTGCTTCTTCACCGTCAGTACTGCCCGCTGGACCGCGATCTGGCCGAAGTGAAACCAGGGCGACAGGTTCGAGAGCGCATTTTCGGTCGGATCGTTCCGTTTGTCGTTGAATTTGCCCAACCGCTTCTCGACAAAGGTCTGCAGCGTCTTCACGCCACCGGTGTACCCCGGCGTGGCCCACTCGACAGCCTCCACCGTACGGTCCACCTGCAGCGTGTCCAGCACCTGCGTCCAGTTGATCGGATCCGCCTCAAAGTTGGCCGTGAACGGATGCTTCACCAACGGCGGGAACGGTGTCAGGTACGTGGGCAAATTTTTGTTCACCTTCGTGCGAATGGTACGGGCCGCATACTCCAGCTTGTCGGAGGTGACCCACACCGGCACAATGTTGTGCGCATCCGGACGCGTGGGCGG]
consensusID : consensus_6439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 976 fasta sequence
[CCTCCACCGTACGGTCCACCTGCAGCGTGTCCAGCACCTGCGTCCAGTTAATCGAAACCGCCTCAAAGTCGGCCGTGAACGGATGCTTCACCAACGGCGGGAACGGTGTCAGGTACGTGGGCAAATTTTTGTTCACCTTCGTGCGAATGGTGCGGGCCGCATACTCCAGCTTGTCGGAGGTGACCCACACCGGCACAATGTTGTGCGCATCGACCTGACACAGCGGGATCCCCATCGGGAGCGCTTTCCGCACCTCGTCGACCCACTTCATCGGCACGCGCAGCGGGCTAAAGTCACACACTACGCCACCGATTTTGTGTTTCTTCACAAACGCCGGCACATTTTCGCCCGCACTACCGCGCAGCAGATGGAACTGGATGTTAAGCTTACGGCACTCTTCGGCGACCTCCTCCAGTCCCTTCAGCATGAACTTAAAGTGCCGTATGGTGGCGTCCAGAAACTTGGGCACCAAGTTGAAGCACACGTGCAGCGGCAGATCGTTCTTGAGCGCCAGCTTCTGTGCGAACAGGAAGGCCCAGTTGTCCTGCACCCGGGCATCGCGCGACATCCAGTACAGCACGCCCTGCTTGCCATCCTCGATGGTCTTGGCATCGGACAGGATGCGAACGCGTTTCTTGTTGAAATCGAAATCCAGTATCGATTTGGCCGTCGCTTTCCGGTCCGCTTTCAGCATCGCGACGTAATCCTCCCGACCGGCCGCGCTGCCTTTGTCGGACGGTTTCGGTGGGTCGTCATTTGGCTTTTGCTTTTTAGCTGCCGGTTCCAGCGAGGAGGAGGACGAAGACGAGCTAGCTGACTTTTCCATGTTTGGACCGGTCAGAAGGAGGGATCTGCACGGTGCGTGATTCAGTGAGCACTTGATAGAGAAGCGGGAAGCACGAACTAAAAACATAAAACGAAGGTGCAGGAACGCAAGCGAGCAGCGAATCG-TTACCAAACACGCGCGTTTCAACGG]
[-] EMBL CNS093LQ [CCTCCACCGTACGGTCCACCTGCAGCGTGTCCAGCACCTGCGTCCAGTTAATCGAAACCGCCTCAAAGTCGGCCGTGAACGGATGCTTCACCAACGGCGGGAACGGTGTCAGGTACGTGGGCAAATTTTTGTTCACCTTCGTGCGAATGGTGCGGGCCGCATACTCCAGCTTGTCGGAGGTGACCCACACCGGCACAATGTTGTGCGCATCGACCTGACACAGCGGGATCCCCATCGGGAGCGCTTTCCGCACCTCGTCGACCCACTTCATCGGCACGCGCAGCGGGCTAAAGTCACACACTACGCCACCGATTTTGTGTTTCTTCACAAACGCCGGCACATTTTCGCCCGCACTACCGCGCAGCAGATGGAACTGGATGTTAAGCTTACGGCACTCTTCGGCGACCTCCTCCAGTCCCTTCAGCATGAACTTAAAGTGCCGTATGGTGGCGTCCAGAAACTTGGGCACCAAGTTGAAGCACACGTGCAGCGGCAGATCGTTCTTGAGCGCCAGCTTCTGTGCGAACAGGAAGGCCCAGTTGTCCTGCACCCGGGCATCGCGCGACATCCAGTACAGCACGCCCTGCTTGCCATCCTCGATGGTCTTGGCATCGGACAGGATGCGAACGCGTTTCTTGTTGAAATCGAAATCCAGTATCGATTTGGCCGTCGCTTTCCGGTCCGCTTTCAGCATCGCGACGTAATCCTCCCGACCGGCCGCGCTGCCTTTGTCGGACGGTTTCGGTGGGTCGTCATTTGGCTTTTGCTTTTTAGCTGCCGGTTCCAGCGAGGAGGAGGACGAAGACGAGCTAGCTGACTTTTCCATGTTTGGACCGGTCAGAAGGAGGGATCTGCACGGTGCGTGATTCAGTGAGCACTTGATAGAGAAGCGGGAAGCACGAACTAAAAACATAAAACGAAGGTGCAGGAACGCAAGCGAGCAGCGAATCG TTACCAAACACGCGCGTTTCAA ]
[-] EMBL BM619731 [ CACTGCCGTGCAGCAGATGGAACTGGATGTTAAGCTTACGGCACTCTTCGGCGACCTCCTCCAGGCCCTTCAGCATGAACTTAAAGTGCCGTATGGTGGCGTCCAGAAACTTGGGCACCAAGTTGAAGCACACGTGCAGCGGCAGATCGTTCTTGAGCGCCAGCTTCTGTGCGAACAGGAATGCCCAGTTGTCCTGCACCCGGGCATCGCGCGACATCCAGTACAGCACGCCCTGCTTGCCATCCTCGATGGTCTTGGCATCGGACAGGATGCGAACGCGTTTCTTGTTGAAATCGAAATCCAGTATCGATTTGGCCGTCGCTTTCCGGTCCGCTTTCAGCATCGCGACGTAATCCTCCCGACCGGCCGCGCTGCCTTTGTCGGACGGTTTCGGTGGGTCGTCATTTGGCTTTTGCTTTTTAGCTGTCGGTTCCAGCGAGGAGGTGGACGAAGACGAGCTAGCTGACTTTTCCATGTTTGGACCGGTCAGAAGAAGGAATCTGCACGGTGCGTGGTTCAGTGAGCACTTGATAGAGGAGCGGAAAGCACGCACTAAAAACATAAAACGAAGGTGCAGCAACGCAAGCGAGAAGCGAATCGTTTACCAAACACGCGCGTTTtcccgg]
[-] EMBL BX604976 [ CCTCCAGTCCCTTCAGCATGAACTTAAAGTGCCGTATGGTGGCGTCCAGAAACTTGGGCACCAAGTTGAAGCACACGTGCAGCGGCAGATCGTTCTTGAGCGCCAGCTTCTGTGCGAACAGGAAGGCCCAGTTGTCCTGCACCCGGGCATCGCGCGACATCCAGTACAGCACGCCCTGCTTGCCATCCTCGATGGTCTTGGCATCGGACAGGATGCGAACGCGTTTCTTGTTGAAATCGAAATCCAGTATCGATTTGGCCGTCGCTTTCCGGTCCGCTTTCAGCATCGCGACGTAATCCTCCCGACAGGCCGCGCTGCCTTTGTCGGACGGTTTCGGTGGGTCGTCATTTGGCTTTTGCTTTTTAGCTGCCGGTTCCAGCGAGGAGGAGGACGAAGACGAGCTAGCTGACTTTTCCATGTTTGGACCGGTCAGAAGGAGGGATCTGCACGGTGCGTGATTCAGTGAGCACTTGATAGAGAAGCGGGAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6439#0 AAATTACTTTGTGTTTATTGGTAATTATACTGAAAAAAGATTCGTTTTATTTCGTGATTA 60
consensus_6439#1 ------------------------------------------------------------
consensus_6439#0 ATAATTACTACATCTGTTCATTGTACTGTAGATTCCTGAACACTAGAACACACAGTCGTT 120
consensus_6439#1 ------------------------------------------------------------
consensus_6439#0 GCCACCAGACGTCTGGTCTGGTGAAGTAATGTGCTGTTATCGTTAAATATCTTACCATTA 180
consensus_6439#1 ------------------------------------------------------------
consensus_6439#0 ATGTATGTAATCTACCTGTAGAGGTAGACGTTTTCATAAAACGAACAAAAATACATTCAA 240
consensus_6439#1 ------------------------------------------------------CCTCCA 6
** *
consensus_6439#0 AGAAACGATAACTCCAGAAGATTTGCATCGCCACGTGACGTGAACCCTACAAACCGGTGG 300
consensus_6439#1 CCGTACGGTCCACCTGCAGCGTGTCCAGCACC--------TGCGTCCAGTTAATCGA-AA 57
*** * * * * * ** * ** ** ** ** **
consensus_6439#0 TCATTATACGAAAAAGATCAAACGAACGTTAACTGGACAAACAAGCAATTATTAAATGCT 360
consensus_6439#1 CCGCCTCAAAGTCGGCCGTGAACGGATGCTTCACCAACGGCGGGAACGGTGTCAGGTACG 117
* * **** * * * ** * * * * *
consensus_6439#0 TCACTGGAATATTAAAAAAATAATTCGAACAAAAATCTCAAAACGTAAGTAATCGATCCA 420
consensus_6439#1 TGGGCAAATTTTTGTTCACCT---TCGTGCGAATGGTGCGGGCCGCA------TACTCCA 168
* * * ** * * *** * ** * ** * ****
consensus_6439#0 AGGAACCCGACCTGACAACTGTTGTCAGCTCTTTAACAGGGCATGTCTACTTGCGACGGT 480
consensus_6439#1 GCTTGTCGGAGGTGACCCACACCGGCACAATGTT----GTGCGCATCGACCTGACACAGC 224
* ** **** * ** ** * ** ** ** ** ** *
consensus_6439#0 GCACTTTCCCACCGTAGCGCACCACGAACGCATTCACGTTGAATTTACGCTTGCATCCGT 540
consensus_6439#1 GGGATCCCCATCGGGAGCGCTTTCCGCACCTCGTCG-ACCCACTTCATCGGCACGCGCAG 283
* * ** * * ***** ** ** ** * ** * * *
consensus_6439#0 CATAGTTCATGTACCGAATTTTACCAAAGATTTCGCGCTCCTTC-CAGCCCTGATCGTGG 599
consensus_6439#1 CG-GGCTAAAGTCACACACTACGCCACCGATTTTGTGTTTCTTCACAAACGCCGGCACAT 342
* * * * ** * * * *** ***** * * * **** ** * *
consensus_6439#0 ATGCCCGCGCATCGACCACATGCAACCGACGTACCCGTTCGGATCGCGCCCATC-CAGAC 658
consensus_6439#1 TTTCGCCCGCA-CTACCGC--GCAGCAGATGGAACTGGATG--TTAAGCTTACGGCACTC 397
* * * **** * *** * *** * ** * * * * * * ** * ** *
consensus_6439#0 TGTAGCGATCGTTCAGATAGATCGCCGTCTCAAGCGCTTCCTCGGGCGTTTTCGTCCACT 718
consensus_6439#1 TTCGGCGACCTCCT---CCAGTCCCTTCAGCATGAACTTAAA-GTGCCGTATGGTGGCGT 453
* **** * ** * ** * *** * ** * * ** *
consensus_6439#0 CCAGGATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGCCCTCCTTCACCA 778
consensus_6439#1 CCAGAAACTTGGGCACCAAGTTGAAGCACACGTGCAGCGGCAGATCGTTCTTGAGCGCCA 513
**** * *** ** *** * ** ** * *** * * ** * ***
consensus_6439#0 TCTGCAGCTGGGCCGAGTTCCACAGATCGTCATGCGTTTTGGCCGTCTCCAACTCCTCCC 838
consensus_6439#1 GCTTCTGTGCGAACAGGAAGGCCCAGTTGTCCTGCACCCGGGCATCGCGCGACATC---- 569
** * * * * * * * *** *** *** * ** *
consensus_6439#0 GGCTGTAGCAGTACACCC-GCTTGTCCTTC-CGATGGTCGTCCAGCGTTTTGCGGGCCCA 896
consensus_6439#1 --CAGTA-CAGCACGCCCTGCTTGCCATCCTCGATGGTCTT--GGCATCGGACAGG---A 621
* *** *** ** *** ***** * * * ******** * ** * * ** *
consensus_6439#0 ATCGTACGCACCCTGCATTGTTGTCGTAGTTTTTTTTTTTTGTTTTTAAAGTTATCCGA- 955
consensus_6439#1 TGCGAACGCGTTTCTTGTTGAAATCGAAATCCAGTATCGATTTGGCCGTCGCTTTCCGGT 681
** **** *** *** * * * * * * * * ****
consensus_6439#0 CAGCTCCCGGCG-CACGATCGCCTCCTCGCAGAACGAGGCCACGCTTTCGCTGTACCGCT 1014
consensus_6439#1 CCGCTTTCAGCATCGCGACGTAATCCTCCCGACCGGCCGCGCTGCCTTTGTCGGACGGTT 741
* *** * ** * *** ***** * * ** ** ** * * ** * *
consensus_6439#0 TGCCGTGCTTCTTCACCGTCAGTACTGCCCGCTGGACCGCGATCTGGCCGAAGTGAAACC 1074
consensus_6439#1 T-CGGTGGGTCGTCATT-TGGCTTTTGCTTTTTAGCTGCCGGTTCCAGCGAGGAGGAGG- 798
* * *** ** *** * * *** * * ** * *** * * *
consensus_6439#0 AGGGCGACAGGTTCGAGAGCGCATTTTCGGTCGGATCGTTCCGTTTGTCGTTGAATTTGC 1134
consensus_6439#1 ACGAAGACGAGCTAGCTGACTTTTCCATGTTTGGACCGGTCAG---AAGGAGGGATCTGC 855
* * *** * * * * * * * *** ** ** * * * ** ***
consensus_6439#0 CCAAC-CGCTTCTCGACAAAGGTCTGCAGCGTCTTCACGCCACCGGTGTACCCCGGCGTG 1193
consensus_6439#1 ACGGTGCGTGATTCAGTGAGCACTTGA--------TAGAGAAGCGGGAAGCACGAACTAA 907
* ** ** * ** * * *** * * *
consensus_6439#0 GCCCACTCGACAGCCTCCACCGTACGGTCCACCTGCAGCGTGTC--CAGCACCTGCGTCC 1251
consensus_6439#1 AAACATAAAACGAAGGT-GCAGGAACGCAAGCGAGCAGCGAATCGTTACCAAACACGCGC 966
** ** * * * * * ****** ** * ** ** *
consensus_6439#0 AGTTGATCGGATCCGCCTCAAAGTTGGCCGTGAACGGATGCTTCACCAACGGCGGGAACG 1311
consensus_6439#1 GTTTCAACGG-------------------------------------------------- 976
** * ***
consensus_6439#0 GTGTCAGGTACGTGGGCAAATTTTTGTTCACCTTCGTGCGAATGGTACGGGCCGCATACT 1371
consensus_6439#1 ------------------------------------------------------------
consensus_6439#0 CCAGCTTGTCGGAGGTGACCCACACCGGCACAATGTTGTGCGCATCCGGACGCGTGGGCG 1431
consensus_6439#1 ------------------------------------------------------------
consensus_6439#0 G 1432
consensus_6439#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||