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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1336 fasta sequence
[CCGGAACTCTTCAGTGCGTCGGTTGTGCTTTTGTGTGTCCCGGGGTCGGTTTTTTTGTGTGTGCCCGCTTGTGTGGTGGCGCCGCGTGACACATACGGTGTCTTTAATTTCCGCCACTTACACTTAAGCCACCTGGCAGAGGTGTAGTGCCTTAGGCAGTGGATATCAGCTGTGTTGCCGCGATGAAGGTGATGCTCAAGACAGGATGGCCCTCGGCAAAGACGATACAAAGGCTGTCGTACACGTACAGTGTGCATCCTTGGAGCTACCTCCCCTGCCAGGAAGTGCCTGACTCATACGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTCGCCCTACCACCAGCAAAACCACCAGCCGCCCCCCTCCGACACCGGCAGCCCGTCGAGCGATGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCCGAAGGAAATTGGAAAAACCCTGCTGGCGCTCCTGTTCCTAGCGGGCAACTTTTTCCTCGCCACCGTGTCGCTCTCCCTGGTGCACGATCGCGTCCCCGACCGGGACGTGTATGGGCCGCTGCCGGACGCCTTCCTGGACCGGGTGCAACCGCAGGACTGGGCGCTCGATGTGAGCGAAATACTGATCATGGGTGGTGGTGAACTCGTGCGTACTGCTGATCACCTTCCACAAGCATCGGTTCATCGTGATGCGGCGCGTGTTTCTGCTGCTGTCGATCCTGTACATGATGCGTTCGCTCACGATGTACGTCACGGTGCTGCCCGTGTCGAGCCGGACGTACTACTGCAGCCCGAAGAGCAACGCGAGCAGTGCGGGCGTGATCGTGAAGCGCGCGTTTCAGCTCATCTCGGGGATGGGGCTGTCGATCAATGGGAAGCAGATCTACTGCGGCGACTACATCTACAGTGGCCACACGGTGACGCTCGTGCTCGGCTATCTAGTGATATCGGAATATTCACCCAAACGCTTCTGGCCGATCCATTGGATCTACTGGTTGGCCAGCTTGACCGGTGTCGTGATGGTGCTGGTAGCACACGGCCACTACACCGTCGACGTGCTGATAGCGTACTACGCCACGACGCGACTGTTCTGGACGTACCACACACTTGCCAACAACAGCTTGCTGCTAAAGCAAAACGGCAACAACTACATAGGACGTGAGTGGTGGTACTTTGCCTTCCGCTACTTTGAGCGCAACGTGCGCGGCCCAATCCCGCTCCAGTACGATTGTCCGCTGTCGCTACCCTCGTCCTGGACGAAAAAGTCGCCCAAACTGCCGGGACGCGAAAGTTGATGCC]
[+] EMBL BM588429 [CCGGAACTCTTCAGTGCGTCGGTTGTGCTTTTGTGTGTCCCGGGGTCGGTTTTTTTGTGTGTGCCCGCTTGTGTGGTGGCGCCGCGTGACACATACGGTGTCTTTAATTTCCGCCACTTACACTTAAGCCACCTGGCAGAGGTGTAGTGCCTTAGGCAGTGGATATCAGCTGTGTTGCCGCGATGAAGGTGATGCTCAAGACAGGATGGCCCTCGGCAAAGACGATACAAAGGCTGTCGTACACGTACAGTGTGCATCCTTGGAGCTACCTCCCCTGCCAGGAAGTGCCTGACTCATACGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTCGCCCTACCACCAGCAAAACCACCAGCCGCCCCCCTCCGACACCGGCAGCCCGTCGAGCGATGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCCGAAGGAAATTGGAAAAACCCTGCTGGCGCTCCTGTTCCTAGCGGGCAACTTTTTCCTCGCCACCGTGTCGCTCTCCCTGGTGCACGATCGCGTCCCCGACCGGGACGTGTATGGGCCGCTGCCGGACGCCTTCCTGGACCGGGTGCAACCGCAGGACTGGGCGCTCGATGTGAGCGAAATACTGATCATGGGTGGTGGTGAACTCGTGCGTAC ]
[+] EMBL BM606505 [ ccgGGGCGCTCGATGTGAGCGAAATACTGATCAT GGTGGTGGTGAACTCGTGCGTACTGCTGATCACCTTCCACAAGCATCGGTTCATCGTGATGCGGCGCGTGTTTCTGCTGCTGTCGATCCTGTACATGATGCGTTCGCTCACGATGTACGTCACGGTGCTGCCCGTGTCGAGCCGGACGTACTACTGCAGCCCGAAGAGCAACGCGAGCAGTGCGGGCGTGATCGTGAAGCGCGCGTTTCAGCTCATCTCGGGGATGGGGCTGTCGATCAATGGGAAGCAGATCTACTGCGGCGACTACATCTACAGTGGCCACACGGTGACGCTCGTGCTCGGCTATCTAGTGATATCGGAATATTCACCCAAACGCTTCTGGCCGATCCATTGGATCTACTGGTTGGCCAGCTTGACCGGTGTCGTGATGGTGCTGGTAGCACACGGCCACTACACCGTCGACGTGCTGATAGCGTACTACGCCACGACGCGACTGTTCTGGACGTACCACACACTTGCCAACAACAGCTTGCTGCTAAAGCAAAACGGCAACAACTACATAGGACGTGAGTGGTGGTACTTTGCCTTCCGCTACTTTGAGCGCAACGTGCGCGGCCCAATCCCGCTCCAGTACGATTGTCCGCTGTCGCTACCCTCGTCCTGGACGAAAAAGTCGCCCAAACTGCCGG ]
[+] EMBL BX628129 [ CGGCGCGTGTTTCTGCTGCTGTCGATCCTGTACATGATGCGTTCGCTCACGATGTACGTCACGGTGCTGCCCGTGTCGAGCCGGACGTACTACTGCAGCCCGAAGAGCAACGCGAGCAGTGCGGGCGTGATCGTGAAGCGCGCGTTTCAGCTCATCTCGGGGATGGGGCTGTCGATCAATGGGAAGCAGATCTACTGCGGCGACTACATCTACAGTGGCCACACGGTGACGCTCGTGCTCGGCTATCTAGTGATATCGGAATATTCACCCAAACGCTTCTGGCCGATCCATTGGATCTACTGGTTGGCCAGCTTGACCGGTGTCGTGATGGTGCTGGTAGCACACGGCCACTACACCGTCGACGTGCTGATAGCGTACTACGCCACGACGCGACTGTTCTGGACGTACCACACACTTGCCAACAACAGCTTGCTGCTAAAGCAAAACGGCAACAACTACATAGGACGTGAGTGGTGGTACTTTGCCTTCCGCTACTTTGAGCGCAACGTGCGCGGCCCAATCCCGCTCCAGTACGATTGTCCGCTGTCGCTACCCTCGTCCTGGACGAAAAAGTCGCCCAAACTGCCGGGACGCGAAAGTTGATGCC]
consensusID : consensus_6441#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCTCTTCAGTGCGTCGGTTGTGCTTTTGTGTGTCCCGGGGTCGGTTTTTTTTGTGTGTGCCCGCTTGAGTGGTGGCGCCGCGTGACACATACTGTGTGCTGTGTGTACACGGCCTCGATCCTGGTGCCTTTTATTTCCGCCACTTACACTAAAGCCACCTGGCAGTGGTGTAGTGCCTTAGGTAGTGGATATCAGCTGTGTTGCCGCGATGAAGGTGATGCTCAAGACAGGATGGCCCTCGGCAAAGACGATACAAAGGCTGTCGTACACGTACAGTGTGCATCCTTGGAGCTACCTCCCCTGCCAGGAAGTGCCTGACTCATACGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTCGCCCTACCACCAGCAAAACCACCAGCCACCGCCCTCCGACACCGGCAGCCCGTCGAGCGATGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCCGAAGGAAATTGGCAAAACCCTGCTAGCGCTCCTGTTCCTAGCGGGCAACTTTTTCCTCGCCACCGTGTCGCTCTCCCTGGTGCACGATCGCGTCCCGAACGGGACGTGTATGG]
[+] EMBL BM584270 [CCGCCCACGCGTCCGCCCACGCGTCCGCTCTTCAGTGCGTCGGTTGTGCTTTTGTGTGTCCCGGGGTCGGTTTTTTTTGTGTGTGCCCGCTTGAGTGGTGGCGCCGCGTGACACATACTGTGTGCTGTGTGTACACGGCCTCGATCCTGGTGCCTTTTATTTCCGCCACTTACACTAAAGCCACCTGGCAGTGGTGTAGTGCCTTAGGTAGTGGATATCAGCTGTGTTGCCGCGATGAAGGTGATGCTCAAGACAGGATGGCCCTCGGCAAAGACGATACAAAGGCTGTCGTACACGTACAGTGTGCATCCTTGGAGCTACCTCCCCTGCCAGGAAGTGCCTGACTCATACGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTCGCCCTACCACCAGCAAAACCACCAGCCACCGCCCTCCGACACCGGCAGCCCGTCGAGCGATGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCCGAAGGAAATTGGCAAAACCCTGCTAGCGCTCCTGTTCCTAGCGGGCAACTTTTTCCTCGCCACCGTGTCGCTCTCCCTGGTGCACGATCGCGTCCCGAACGGGACGTGTATGG]
consensusID : consensus_6441#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[CCGAAAAAAAAAGGCTTAAACATATTTTAACCACACACCGAGTGCCGGTCATTGTGTACGTGTATGTGTATGTGCGATATTGTTTGTGTACATAGGTGTGCGTCATCCTAATCCCGTAGGAAAGCTTGTCTACGCCAAGCCTGCAAGATAGCCTTGGGCGAAGCAGAACTGTAACAGTTGAATAAATTAAATTCACAAGCAAAAACAGGAAAAAAGCCCGAAACTGCAAGCAAATAATTAATCATCAAAATGGAAATTAACGCAAGAGGAAGTCATAAGAATGGCTCCGGTTTGGATCTAGCCACGGTCGTGATGGAAGTGCCTGACTCATACGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTCGCCCTACCACCAGCAAAACCACCAGCCGCCCCCCTCCGACACCGGCAGCCCGTCGAGCGATGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCCGAAGGAAATTGGCAAAACCCTGCTAGCGCTCCTGGTTCCTAGCGGGCAACTTTTTCCTCGCCACCGTGTCGCTCTCCCTGGTGCACGATCGTGTCCCCGACCGGGGACGTGTACGGGCCG]
[+] EMBL BM579074 [CCGAAAAAAAAAGGCTTAAACATATTTTAACCACACACCGAGTGCCGGTCATTGTGTACGTGTATGTGTATGTGCGATATTGTTTGTGTACATAGGTGTGCGTCATCCTAATCCCGTAGGAAAGCTTGTCTACGCCAAGCCTGCAAGATAGCCTTGGGCGAAGCAGAACTGTAACAGTTGAATAAATTAAATTCACAAGCAAAAACAGGAAAAAAGCCCGAAACTGCAAGCAAATAATTAATCATCAAAATGGAAATTAACGCAAGAGGAAGTCATAAGAATGGCTCCGGTTTGGATCTAGCCACGGTCGTGATGGAAGTGCCTGACTCATACGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTCGCCCTACCACCAGCAAAACCACCAGCCGCCCCCCTCCGACACCGGCAGCCCGTCGAGCGATGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCCGAAGGAAATTGGCAAAACCCTGCTAGCGCTCCTGGTTCCTAGCGGGCAACTTTTTCCTCGCCACCGTGTCGCTCTCCCTGGTGCACGATCGTGTCCCCGACCGGGGACGTGTACGGGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6441#0 ---------------------CCGGAACTCTTCAGTGCGTCGGTTGTGCTTTTGT-GTGT 38
consensus_6441#1 CCGCCCACGCGTCCGCCCACGCGTCCGCTCTTCAGTGCGTCGGTTGTGCTTTTGT-GTGT 59
consensus_6441#2 ------------------------CCGAAAAAAAAAGGCTTAAACATATTTTAACCACAC 36
* * * * ***
consensus_6441#0 CCCGGGGTCGGTTTTTTT-GTGTGTGCCCGCTTGTGTGGTGGCGCCGCGTG-ACACATAC 96
consensus_6441#1 CCCGGGGTCGGTTTTTTTTGTGTGTGCCCGCTTGAGTGGTGGCGCCGCGTG-ACACATAC 118
consensus_6441#2 ACCGAGTGCCGGTCATTGTGTACGTGTATGTGTATGTG-CGATATTGTTTGTGTACATAG 95
*** * * * * ** ** *** * * *** * * ** *****
consensus_6441#0 -------------------------------GGTGTCTTTAATTTCCGCCACTTACACTT 125
consensus_6441#1 T-GTGTGCTGTGTGTACACGGCCTCGATCCTGGTGCCTTTTATTTCCGCCACTTACACTA 177
consensus_6441#2 GTGTGCGTCATCCTAATCCCGTAGGAAAGCTTGTCTACGCCAAGCCTGCAAGATAGCCTT 155
** * * ** * ** **
consensus_6441#0 AAGCCACCTGGCAGAGGTGTAGTGCCTTAGGCAGTGGATATCAGCTGTGTTGCCGCGATG 185
consensus_6441#1 AAGCCACCTGGCAGTGGTGTAGTGCCTTAGGTAGTGGATATCAGCTGTGTTGCCGCGATG 237
consensus_6441#2 GGGCGA---AGCAGAACTGTAACAGTTGAATAAATTAAATTCACAAGCAAAAACAGGAAA 212
** * **** **** * * * * * *** * * **
consensus_6441#0 AAGGT--GATGCTCAAGACAGGATGGCCCTCGGCAAAGACGATACAAAGGCTGTCGTACA 243
consensus_6441#1 AAGGT--GATGCTCAAGACAGGATGGCCCTCGGCAAAGACGATACAAAGGCTGTCGTACA 295
consensus_6441#2 AAAGCCCGAAACTGCAAGCAAATAATTAATCATCAAAATGGAAATTAACGCAAGAGGAAG 272
** * ** ** * ** ** **** ** * ** ** * *
consensus_6441#0 CGTACAGTGTGCATCC---TTGGAGCTA-CCTCCCCTGCCA-GGAAGTGCCTGACTCATA 298
consensus_6441#1 CGTACAGTGTGCATCC---TTGGAGCTA-CCTCCCCTGCCA-GGAAGTGCCTGACTCATA 350
consensus_6441#2 TCATAAGAATGGCTCCGGTTTGGATCTAGCCACGGTCGTGATGGAAGTGCCTGACTCATA 332
** ** *** ***** *** ** * * * ******************
consensus_6441#0 CGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTC 358
consensus_6441#1 CGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTC 410
consensus_6441#2 CGACTACAACAGCCCCAATGCAACGAACCACCACCCGTCGGCCTACCCACATCCCGGCTC 392
************************************************************
consensus_6441#0 GCCCTACCACCAGCAAAACCACCAGCCGCCCCCCTCCGACACCGGCAGCCCGTCGAGCGA 418
consensus_6441#1 GCCCTACCACCAGCAAAACCACCAGCCACCGCCCTCCGACACCGGCAGCCCGTCGAGCGA 470
consensus_6441#2 GCCCTACCACCAGCAAAACCACCAGCCGCCCCCCTCCGACACCGGCAGCCCGTCGAGCGA 452
*************************** ** *****************************
consensus_6441#0 TGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCC 478
consensus_6441#1 TGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCC 530
consensus_6441#2 TGCGGTAATGATCAAGATCGATACACCCTCGCCCCTGCGGGACGATCAGTCGCGCTATCC 512
************************************************************
consensus_6441#0 GAAGGAAATTGGAAAAACCCTGCTGGCGCTCCTG-TTCCTAGCGGGCAACTTTTTCCTCG 537
consensus_6441#1 GAAGGAAATTGGCAAAACCCTGCTAGCGCTCCTG-TTCCTAGCGGGCAACTTTTTCCTCG 589
consensus_6441#2 GAAGGAAATTGGCAAAACCCTGCTAGCGCTCCTGGTTCCTAGCGGGCAACTTTTTCCTCG 572
************ *********** ********* *************************
consensus_6441#0 CCACCGTGTCGCTCTCCCTGGTGCACGATCGCGTCCCCGACCGGG-ACGTGTATGGGCCG 596
consensus_6441#1 CCACCGTGTCGCTCTCCCTGGTGCACGATCGCGTCCC-GAACGGG-ACGTGTATGG---- 643
consensus_6441#2 CCACCGTGTCGCTCTCCCTGGTGCACGATCGTGTCCCCGACCGGGGACGTGTACGGGCCG 632
******************************* ***** ** **** ******* **
consensus_6441#0 CTGCCGGACGCCTTCCTGGACCGGGTGCAACCGCAGGACTGGGCGCTCGATGTGAGCGAA 656
consensus_6441#1 ------------------------------------------------------------
consensus_6441#2 ------------------------------------------------------------
consensus_6441#0 ATACTGATCATGGGTGGTGGTGAACTCGTGCGTACTGCTGATCACCTTCCACAAGCATCG 716
consensus_6441#1 ------------------------------------------------------------
consensus_6441#2 ------------------------------------------------------------
consensus_6441#0 GTTCATCGTGATGCGGCGCGTGTTTCTGCTGCTGTCGATCCTGTACATGATGCGTTCGCT 776
consensus_6441#1 ------------------------------------------------------------
consensus_6441#2 ------------------------------------------------------------
consensus_6441#0 CACGATGTACGTCACGGTGCTGCCCGTGTCGAGCCGGACGTACTACTGCAGCCCGAAGAG 836
consensus_6441#1 ------------------------------------------------------------
consensus_6441#2 ------------------------------------------------------------
consensus_6441#0 CAACGCGAGCAGTGCGGGCGTGATCGTGAAGCGCGCGTTTCAGCTCATCTCGGGGATGGG 896
consensus_6441#1 ------------------------------------------------------------
consensus_6441#2 ------------------------------------------------------------
consensus_6441#0 GCTGTCGATCAATGGGAAGCAGATCTACTGCGGCGACTACATCTACAGTGGCCACACGGT 956
consensus_6441#1 ------------------------------------------------------------
consensus_6441#2 ------------------------------------------------------------
consensus_6441#0 GACGCTCGTGCTCGGCTATCTAGTGATATCGGAATATTCACCCAAACGCTTCTGGCCGAT 1016
consensus_6441#1 ------------------------------------------------------------
consensus_6441#2 ------------------------------------------------------------
consensus_6441#0 CCATTGGATCTACTGGTTGGCCAGCTTGACCGGTGTCGTGATGGTGCTGGTAGCACACGG 1076
consensus_6441#1 ------------------------------------------------------------
consensus_6441#2 ------------------------------------------------------------
consensus_6441#0 CCACTACACCGTCGACGTGCTGATAGCGTACTACGCCACGACGCGACTGTTCTGGACGTA 1136
consensus_6441#1 ------------------------------------------------------------
consensus_6441#2 ------------------------------------------------------------
consensus_6441#0 CCACACACTTGCCAACAACAGCTTGCTGCTAAAGCAAAACGGCAACAACTACATAGGACG 1196
consensus_6441#1 ------------------------------------------------------------
consensus_6441#2 ------------------------------------------------------------
consensus_6441#0 TGAGTGGTGGTACTTTGCCTTCCGCTACTTTGAGCGCAACGTGCGCGGCCCAATCCCGCT 1256
consensus_6441#1 ------------------------------------------------------------
consensus_6441#2 ------------------------------------------------------------
consensus_6441#0 CCAGTACGATTGTCCGCTGTCGCTACCCTCGTCCTGGACGAAAAAGTCGCCCAAACTGCC 1316
consensus_6441#1 ------------------------------------------------------------
consensus_6441#2 ------------------------------------------------------------
consensus_6441#0 GGGACGCGAAAGTTGATGCC 1336
consensus_6441#1 --------------------
consensus_6441#2 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||