cluster # 6464

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Anopheles gambiae
cluster # 6464 cluster # 6464 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6464#0 length = 846 sequences # 4

consensus_6464#1 length = 654 sequences # 1

consensusID : consensus_6464#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 846
fasta sequence

                              [CCGCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTGGATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCTGCCGTCCGACGGGACTTTCCACGACGCATCCGCATTTAAAATAATATATAGGCGCATGTGCGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGATCGAGCGAT------AGAGAGAGAG--------CGAGAAAGAGGGGGAAATAGAAGCGAGCGTGGTGCCACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAA--ACACACACACGAGCACCACCGGCAACCGCATCCAAAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGCGACG-AAACCGGACCAACCG-CCCCAGCCCACCGAAACAGCCAGTGTCAGTTCCTCCTCGAGGGATACGAAGCGAGAGGCCAGCTGGCCGTCGGTGCTGTTTTACATCCATCTCAACATTCTCGGCGTGTACGGAATTTTCGTTTTATTTTCTCACACCTCACTGATAACGTGTGTCTTCACATTCTTGCTCACATTGTTCGGCATCTTGGGCGTTACGGCCGGGGCCCACCGTCTA]

[+] EMBL BM602757             [CCGCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTGGATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCTGCCGTCCGACGGGACTTTCCACGACGCATCCGCATTTAAAATAATATATAGGCGCATGTGCGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGATCAAGCGAC      AGAGAGAGAG        CGAGAAAGAGGGGGACATAGAAGCGAGCGTGGTGCCACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAA  ACACACACACGAGCACCACCGGCAACCGCATCCAAAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGCGACG AAACCGGACCAACCG CCCCAGCCCACCGAAACAGCCAGTGTCAGTTCCTCCTCGAGGGATACGAAGCGAGAGGCCAGC                                                                                                                                                         ]
[+] EMBL BM657423             [                                            ccGTGTGAATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCTGCCGTCCGACGGGACTTTCCACGACGCATCCGCATTGAAAATAATATACAGGCGCATGTGCGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCAGTCGATCGAGCGATAGAGAGAGAGAGAGAG        CGAGAAAGAGGGGGAAATAGAAGCGAGCGTGGTGCCTCCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTAGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAAACACACACACACGAGCACCACCGGCAATCGCATCCACAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGCGACGAAAACCGGACCAACCGCCCCCAGCCCA                                                                                                                                                                                                              ]
[+] EMBL BX621567             [                                                                                                                                                                                  TCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGATCGAGCGAT      AGAGAGAGAGAGAGAGACCGAGAAAGAGGGGAAAATAGAAGCGAGCGTGGTGCCACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAA  ACACACACACGAGCACCACCGGCAACCGCATCCAAAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGCGACG AAACCGGACCAACCG CCCCAGCCCACCGAAACAGCCAGTGTCAGTTCCTCCTCGAGGGATACGAAGCGAGAGGCCAGCTGGCCGTCGGTGCTGTTTTACATCCATCTCAACATTCTCGGCGTGTACGGAATTTTCGTTTTATTTTCTCACACCTCACTGATAACGTGTGTCTTCACATTCTTGCTCACATTGTTCGGCATCTTGGGCGTTACGGCCGGGGCCCACCGTCTA]
[+] EMBL BX626712             [                                                                                                                                                                                  TCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGATCGAGCGAT      AGAGAGAGAGAGAGAGACCGAGAAAGAGGGGAAAATAGAAGCGAGCGTGGTGCCACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAA  ACACACACACGAGCACCACCGGCAACCGCATCCAAAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGCGACG AAACCGGACCAACCG CCCCAGCCCACCGAAACAGCCAGTGTCAGTTCCTCCTCGAGGGATACGAAGCGAGAGGGCAGCTGGNCGTCGGTGCTGTTTTACATCCATCTCAACATTCTCGGCGTGTACGGAATTTT                                                                                                 ]




>consensus_6464#0
CCGCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTGGATTTATGC
CCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCTGCCGTCCGA
CGGGACTTTCCACGACGCATCCGCATTTAAAATAATATATAGGCGCATGTGCGCTCGCTC
TGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAA
CCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGG
TCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGATCGAGCGATAGAGAGAGAGCGAGAA
AGAGGGGGAAATAGAAGCGAGCGTGGTGCCACCGTTTGACGACACAAGGAAGCGTCAGCA
TTAGAAGAGCAGGGTGGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACA
CCAAAAACTAACGTACTCCAAACACACACACGAGCACCACCGGCAACCGCATCCAAAATG
GCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGC
GGTGACGGGGCGACGAAACCGGACCAACCGCCCCAGCCCACCGAAACAGCCAGTGTCAGT
TCCTCCTCGAGGGATACGAAGCGAGAGGCCAGCTGGCCGTCGGTGCTGTTTTACATCCAT
CTCAACATTCTCGGCGTGTACGGAATTTTCGTTTTATTTTCTCACACCTCACTGATAACG
TGTGTCTTCACATTCTTGCTCACATTGTTCGGCATCTTGGGCGTTACGGCCGGGGCCCAC
CGTCTA

consensusID : consensus_6464#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [CCGCGGAGCTCTCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTGGATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCTGCCGTCCGACGGGACTTTCCACGACGCATCCGCATTGAAAATAATATATAGGCGCATGTGCGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGTTCGAGCGATAGAGAGAGAGAAAGAGAGAGAGAGGGAGAGAGCGAAAAAGAGGGGGACATAGAAGAGAGCGTGGTGCCACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAAACACACACACACGAGCACCACCGGCAATCGCATCCACAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGGCGACGAAACC]

[+] EMBL BM623449             [CCGCGGAGCTCTCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTGGATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCTGCCGTCCGACGGGACTTTCCACGACGCATCCGCATTGAAAATAATATATAGGCGCATGTGCGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACAGACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTAGCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGTTCGAGCGATAGAGAGAGAGAAAGAGAGAGAGAGGGAGAGAGCGAAAAAGAGGGGGACATAGAAGAGAGCGTGGTGCCACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACAGCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAAACACACACACACGAGCACCACCGGCAATCGCATCCACAATGGCCGATCATAATGAAAACTTTGCCCCGAGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGGCGACGAAACC]




>consensus_6464#1
CCGCGGAGCTCTCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTG
GATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCT
GCCGTCCGACGGGACTTTCCACGACGCATCCGCATTGAAAATAATATATAGGCGCATGTG
CGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACA
GACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTA
GCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGTTCGAGCGATAGAGAGA
GAGAAAGAGAGAGAGAGGGAGAGAGCGAAAAAGAGGGGGACATAGAAGAGAGCGTGGTGC
CACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACA
GCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAAACACACAC
ACACGAGCACCACCGGCAATCGCATCCACAATGGCCGATCATAATGAAAACTTTGCCCCG
AGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGGCGACGAAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6464#0      ---------CCGCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTG 51
consensus_6464#1      CCGCGGAGCTCTCGCAGTGTGTGCCTGCGTGCGTTTGTGTGTTTGTGTATGTGTGGTGTG 60
                                * ************************************************

consensus_6464#0      GATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCT 111
consensus_6464#1      GATTTATGCCCCTTAACCGGCGGTCCGAGTCAGCGTGTGAAGCGTTTTGCGCGTTTGCCT 120
                      ************************************************************

consensus_6464#0      GCCGTCCGACGGGACTTTCCACGACGCATCCGCATTTAAAATAATATATAGGCGCATGTG 171
consensus_6464#1      GCCGTCCGACGGGACTTTCCACGACGCATCCGCATTGAAAATAATATATAGGCGCATGTG 180
                      ************************************ ***********************

consensus_6464#0      CGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACA 231
consensus_6464#1      CGCTCGCTCTGCTGTCCAGAGCGCGGTGGCTCAACGGAACGGTGACTTGCGCGCTGCACA 240
                      ************************************************************

consensus_6464#0      GACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTA 291
consensus_6464#1      GACGACGAACCAGCGGATGGAATTCGTAGAATATCACTTCGTGATTGTCATCTGCCTCTA 300
                      ************************************************************

consensus_6464#0      GCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGATCGAGCGATAGAGAGA 351
consensus_6464#1      GCCAAACGGTCGCTGCGTTTAGCGGATAAACATTAGCCGGTCGTTCGAGCGATAGAGAGA 360
                      ******************************************* ****************

consensus_6464#0      GAG----------------------CGAGAAAGAGGGGGAAATAGAAGCGAGCGTGGTGC 389
consensus_6464#1      GAGAAAGAGAGAGAGAGGGAGAGAGCGAAAAAGAGGGGGACATAGAAGAGAGCGTGGTGC 420
                      ***                      *** *********** ******* ***********

consensus_6464#0      CACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACA 449
consensus_6464#1      CACCGTTTGACGACACAAGGAAGCGTCAGCATTAGAAGAGCAGGGTGGAGATAGAAAACA 480
                      ************************************************************

consensus_6464#0      GCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAAACACACAC 509
consensus_6464#1      GCATCACCCCTGCGAGCCCTGTGTTCATACACCAAAAACTAACGTACTCCAAACACACAC 540
                      ************************************************************

consensus_6464#0      AC--GAGCACCACCGGCAACCGCATCCAAAATGGCCGATCATAATGAAAACTTTGCCCCG 567
consensus_6464#1      ACACGAGCACCACCGGCAATCGCATCCACAATGGCCGATCATAATGAAAACTTTGCCCCG 600
                      **  *************** ******** *******************************

consensus_6464#0      AGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGG-CGACGAAACCGGACCA 626
consensus_6464#1      AGTGCGGAGCACCTGAAAGCGCAGCAGCCGAGCGGTGACGGGGGCGACGAAACC------ 654
                      ******************************************* **********      

consensus_6464#0      ACCGCCCCAGCCCACCGAAACAGCCAGTGTCAGTTCCTCCTCGAGGGATACGAAGCGAGA 686
consensus_6464#1      ------------------------------------------------------------
                                                                                  

consensus_6464#0      GGCCAGCTGGCCGTCGGTGCTGTTTTACATCCATCTCAACATTCTCGGCGTGTACGGAAT 746
consensus_6464#1      ------------------------------------------------------------
                                                                                  

consensus_6464#0      TTTCGTTTTATTTTCTCACACCTCACTGATAACGTGTGTCTTCACATTCTTGCTCACATT 806
consensus_6464#1      ------------------------------------------------------------
                                                                                  

consensus_6464#0      GTTCGGCATCTTGGGCGTTACGGCCGGGGCCCACCGTCTA 846
consensus_6464#1      ----------------------------------------