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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1126 fasta sequence
[GAAGCAGTATCAACTGAATCGGACAGGTACTCCTGCAGAGTACAGAGTAAAAAAGCTTTGAGTCGCCCCATTGCTTCATGCTACGGGAGGATTGTTAATACGATGCATAGAAGCTAGAGGGCCGCGAGGAAAACCTCTTTCAACCGAGTGCAACCTGAGGAATAGCTATTACCACGGCAAGTATGTAAGCGAGCAGAAAGCTAAAAGTTGCGTAAGAGTGTAAGCATAATAAGTAAATTTGCCGGAAAGAAGGGAATGAGAAACGAGCCAAAAATCATATCTTTATCAGTAAGAAAATTCTTAGCAAATATTAATACAAACGGAACAAATGACGAAAAGTGGAATAAAACACTGACACAACCAGACACACACATATACACACGTACACACATAACAAAACACAAACAAATGGAATAGGTACCAACAAATCAACATTATAGGATGCAGCACTTGTTTCGCTGAGTATCAGAAACGATAGGATTAGTTAGGAGCATGAAATAAAAGGATATCGTTCGAGTCCTGATTAACAAATTACGCTAAAAGTGTAACGTTGTTTATGCAAGAGTTGCAAACAAGTGAAGTAAGAGATAGAGCGAGAGAGAGTTAGGGAAGAGGCGTGCAATTGTAAATGATAAACGATCGCATTTTAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTATGCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGGTTGCAATCGCAATGGTGATACTGATCAAGCTCGATGTGCAAGAATTTATTCCAGAAGCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGTAATGAAATGGTTCATCTGTGTCCGTGGAAGGATTCAAATTGAGTTTTTGAAGCATATATTATTAGCAATCCAAATGTCATACATGCGTATTCTTCTCGTCAAACACCAACATTTGTGAGCTTTTTGAAAAGAACTATTGCATTTTGTTACGTTGAACCTGCACTATGGTTGAACTATGTTAGGTTGAACCAATAAAAAAGAATTAAAATTTTTGATTAATGATTTTCTTTTGATTTTGATTAATGTAGTTG]
[+] EMBL BM615465 [GAAGCAGTATCAACTGAATCGGACAGGTACTCCTGCAGAGTACAGAGTAAAAAAGCTTTGAGTCGCCCCATTGCTTCATGCTACGGGAGGATTGTTAATACGATGCATAGAAGCTAGAGGGCCGCGAGGAAAACCTCTTTCAACCGAGTGCAACCTGAGGAATAGCTATTACCACGGCAAGTATGTAAGCGAGCAGAAAGCTAAAAGTTGCGTAAGAGTGTAAGCATAATAAGTAAATTTGCCGGAAAGAAGGGAATGAGAAACGAGCCAAAAATCATATCTTTATCAGTAAGAAAATTCTTAGCAAATATTAATACAAACGGAACAAATGACGAAAAGTGGAATAAAACACTGACACAACCAGACACACACATATACACACGTACACACATAACAAAACACAAACAAATGGAATAGGTACCAACAAATCAACATTATAGGATGCAGCACTTGTTTCGCTGAGTATCAGAAACGATAGGATTAGTTAGG ]
[+] EMBL BM649722 [ ccgAAAAATCATATCTTTATCAGTAAGAAAATTCTTAGCAAATATTAATACAAACGGAACAAATGACGAAAAGTGGAATAAAACACTGACACAACCAGACACACACATACACACACGTACACACATAACAAAACACAAACAAATGGAATAGGTACCAACAAATCAACATTATAGGATGCAGCACTTGTTTCGCTGAGTATCAGAAACGATAGGATTAGTTAGGAGCATGAAATAAAAGGATATCGTTCGAGTCCTGATTAACAAATTACGCTAAAAGTGTAACGTTGTTTATGCAAGAGTTGCAAACAAGTGAAGTAAGAGATAGAGCGAGAGAGAGTTAGGGAAGAGGCGTGCAATTGTAAATGATAAACGATCGCATTTTAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTATGCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGGTTGCAATCGCAATGGTGATACTGATCAAGCTCGATGTGCAAGAATTTATTCCAGAAGCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGTAATGAAATGGTTCATCTGTGTCCGTGGAA ]
[+] EMBL BX610331 [ AGAGGCGTGCAATTGTAAATGATAAACGATCGCATTTTAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTATGCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGGTTGCAATCGCAATGGTGATACTGATCAAGCTCGATGTGCAAGAATTTATTCCAGAAGCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGTAATGAAATGGTTCATCTGTGTCCGTGGAAGGATTCAAATTGAGTTTTTGAAGCATATATTATTAGCAATCCAAATGTCATACATGCGTATTCTTCTCGTCAAACACCAACATTTGTGAGCTTTTTGAAAAGAACTATTGCATTTTGTTACGTTGAACCTGCACTATGGTTGAACTATGTTAGGTTGAACCAATAAAAAAGAATTAAAATTTTTGATTAATGATTTTCTTTTGATTTTGATTAATGTAGTTG]
consensusID : consensus_6467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1089 fasta sequence
[AGAATCCCCTGAGGTTAAACTCTTTGAACGAGTGCACCTGAGGAATAGCTATTACCACGGGCAAGTATGTAAGCGAGCAGAAAGCTAAAAGTTGCGTAAGAGTGTAAGCATAATAAGTAAATTTTGCCGGAAAGAAGGGAATGAGAAACTGATGCCAAAAATCATATCTTTATCAGTAAGAAAATTCTTAGCAACTATTAATACAAACGNGAACAAATGACGANANCCACGTGGCATAAAACACTTGACACAACCAGACACACACATACACACACGTACACACNTAACACAAANCCACCACAAACCAAAACTTGGGGCATTAAGCGGTACCCCAAACCANAATCCACACCCTCTACTAGGACNTGCCAGCCACCNACTGGTCCACCGCCTTGGANAGTACTCCACNCACNCAACCGGAATCAAGAGACTTCANGCTCNCAAGCGCANGCCATTGCAANANTACNCACANGTGCACTAATTCCGCATACGCCNGCAGGTCNCCCCTTGGAAGTTCACAAGCGCACACGCACTCTAGCGGGCCGTNAANACACGGGTTGCTCACACCCGGCTTGGGNTACNNTAACTTGGCCACAACGACGCNCTGGGCGCACNACCACAACNGTTGGCAANAGNGCGTTACACACGCCACGGACTTACACTGCACGACAGGGAAGCAACGGAAGCAAGTNTAACGTCGGTGGCAAAACACAGCAAAGNGGGGCCCCGTGCTTTGCCACACACAAACTATNGGCNTATACAAGCAAAGTTNGGAAGATTAANNAACAANCCGNGCAAATGCCCCGGGCCCACACTTTTCCTGNACAACACACGGCTGGCCTCTGGCGCGCAACCAANTTACCACAACTAACNCNCGCCACCCCACACNAGGGNGGCGGCAACACANGGTCTGCGACAGGCAACTATGGGACCACTAACCCAAACAGCACACACATTACCCCGAAAGNAAAAAGGCNACGTTTATAAACCTNGATCACATTTAGGNACCCCGGTATGCATATNGCTTNGGGGTCACACACCGGGCCATCATNCTTACATGGCCTCNNTCGGGGGTTCACAACGNCNANTCGA]
[+] EMBL AL692512 [AGAATCCCCTGAGGTTAAACTCTTTGAACGAGTGCACCTGAGGAATAGCTATTACCACGGGCAAGTATGTAAGCGAGCAGAAAGCTAAAAGTTGCGTAAGAGTGTAAGCATAATAAGTAAATTTTGCCGGAAAGAAGGGAATGAGAAACTGATGCCAAAAATCATATCTTTATCAGTAAGAAAATTCTTAGCAACTATTAATACAAACGNGAACAAATGACGANANCCACGTGGCATAAAACACTTGACACAACCAGACACACACATACACACACGTACACACNTAACACAAANCCACCACAAACCAAAACTTGGGGCATTAAGCGGTACCCCAAACCANAATCCACACCCTCTACTAGGACNTGCCAGCCACCNACTGGTCCACCGCCTTGGANAGTACTCCACNCACNCAACCGGAATCAAGAGACTTCANGCTCNCAAGCGCANGCCATTGCAANANTACNCACANGTGCACTAATTCCGCATACGCCNGCAGGTCNCCCCTTGGAAGTTCACAAGCGCACACGCACTCTAGCGGGCCGTNAANACACGGGTTGCTCACACCCGGCTTGGGNTACNNTAACTTGGCCACAACGACGCNCTGGGCGCACNACCACAACNGTTGGCAANAGNGCGTTACACACGCCACGGACTTACACTGCACGACAGGGAAGCAACGGAAGCAAGTNTAACGTCGGTGGCAAAACACAGCAAAGNGGGGCCCCGTGCTTTGCCACACACAAACTATNGGCNTATACAAGCAAAGTTNGGAAGATTAANNAACAANCCGNGCAAATGCCCCGGGCCCACACTTTTCCTGNACAACACACGGCTGGCCTCTGGCGCGCAACCAANTTACCACAACTAACNCNCGCCACCCCACACNAGGGNGGCGGCAACACANGGTCTGCGACAGGCAACTATGGGACCACTAACCCAAACAGCACACACATTACCCCGAAAGNAAAAAGGCNACGTTTATAAACCTNGATCACATTTAGGNACCCCGGTATGCATATNGCTTNGGGGTCACACACCGGGCCATCATNCTTACATGGCCTCNNTCGGGGGTTCACAACGNCNANTCGA]
consensusID : consensus_6467#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[AGAATCCCCCCGAGNTTAAAGAGAGTAGGGAAGAGGCGTGCAATTGTAAATGATAAACGATCGCATTTTAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTATGCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGGTTGCAATCGCAATGGTGATACTGATCAAGCTCGATGTGCAAGAATTTATTCCAGAAGCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGCTAACTGAAACTGGTTCATCTGTGTCCGNTGGCAAGGATTCAAATTGACGCTTCTNCTCGAACGCACTATANTTACTCTAGCAAATCCCAAATGGTCATACATGCGCTACTTCCTTCCTCGNTCAACACACCAAACACTTCNGCTGAGACTTACCGNACACACANGAACCTAATTGCCACTCTCACCGTATACGCTTGAAACCCCCTGCCCACCCTAACTGGCGCCTCTCGAACCCTAACTGCCTTCTCACGGCAGCTNTTGCANAACCCCCAAACTANCCCACAAAGGCACNACNTNTCAANCCACACTCTCCACTCTGGCANCNTCTCCACACCCGGCACCCTNTACCTCACCCATNC]
[+] EMBL AL692125 [AGAATCCCCCCGAGNTTAAAGAGAGTAGGGAAGAGGCGTGCAATTGTAAATGATAAACGATCGCATTTTAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTATGCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGGTTGCAATCGCAATGGTGATACTGATCAAGCTCGATGTGCAAGAATTTATTCCAGAAGCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGCTAACTGAAACTGGTTCATCTGTGTCCGNTGGCAAGGATTCAAATTGACGCTTCTNCTCGAACGCACTATANTTACTCTAGCAAATCCCAAATGGTCATACATGCGCTACTTCCTTCCTCGNTCAACACACCAAACACTTCNGCTGAGACTTACCGNACACACANGAACCTAATTGCCACTCTCACCGTATACGCTTGAAACCCCCTGCCCACCCTAACTGGCGCCTCTCGAACCCTAACTGCCTTCTCACGGCAGCTNTTGCANAACCCCCAAACTANCCCACAAAGGCACNACNTNTCAANCCACACTCTCCACTCTGGCANCNTCTCCACACCCGGCACCCTNTACCTCACCCATNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6467#0 GAAGCAGTATCAACTGAATCGGACAGGTACTCCTGCAGAGTACAGAGTAAAAAAGCTTTG 60
consensus_6467#2 ------------------------------------------------------------
consensus_6467#1 ------------------------------------------------------------
consensus_6467#0 AGTCGCCCCATTGCTTCATGCTACGGGAGGATTGTTAATACGATGCATAGAAGCTAGAGG 120
consensus_6467#2 ------------------------------------------------------------
consensus_6467#1 -------------------------------------------------------AGAAT 5
consensus_6467#0 GCCGCGAGGAAAACCTCTTTCAACCGAGTGCAACCTGAGGAATAGCTATTACCACGG-CA 179
consensus_6467#2 ------------------------------------------------------------
consensus_6467#1 CCCCTGAGGTTAAACTCTTTGAAC-GAGTGCA-CCTGAGGAATAGCTATTACCACGGGCA 63
consensus_6467#0 AGTATGTAAGCGAGCAGAAAGCTAAAAGTTGCGTAAGAGTGTAAGCATAATAAGTAAATT 239
consensus_6467#2 ------------------------------------------------------------
consensus_6467#1 AGTATGTAAGCGAGCAGAAAGCTAAAAGTTGCGTAAGAGTGTAAGCATAATAAGTAAATT 123
consensus_6467#0 T-GCCGGAAAGAAGGGAATGAGAAACGA--GCCAAAAATCATATCTTTATCAGTAAGAAA 296
consensus_6467#2 ------------------------------------------------------------
consensus_6467#1 TTGCCGGAAAGAAGGGAATGAGAAACTGATGCCAAAAATCATATCTTTATCAGTAAGAAA 183
consensus_6467#0 ATTCTTAGCAAATATTAATACAAACGG-AACAAATGACGAAAA----GTGGAATAAAACA 351
consensus_6467#2 ------------------------------------------------------------
consensus_6467#1 ATTCTTAGCAACTATTAATACAAACGNGAACAAATGACGANANCCACGTGGCATAAAACA 243
consensus_6467#0 CT-GACACAACCAGACACACACATATACACACGTACACACATAACAAAACACAAACAAAT 410
consensus_6467#2 ------------------------------------------------------------
consensus_6467#1 CTTGACACAACCAGACACACACATACACACACGTACACACNTAACACAAANCCACCACAA 303
consensus_6467#0 GGAATAGGTACCAACAAATCAACATTATAGGATGCAGCACTTGTTTCGCTGAGTATCAGA 470
consensus_6467#2 ------------------------------------------------------------
consensus_6467#1 ACCAAAACTTGGGGCATTAAGCGGTACCCCAAACCANAATCCACACCCTCTACTAGGACN 363
consensus_6467#0 AACGATAGGATTAGTTAGGAGCATGAAATAAAAGGATATCGTTCGAGTCCTGATTAACAA 530
consensus_6467#2 ------------------------------------------------------------
consensus_6467#1 TGCCAGCCACCNACTGGTCCACCGCCTTGGANAGTACTCCACNCACNCAACCGGAATCAA 423
consensus_6467#0 ATTACGCTAAAAGTGTAA-CGTTGTTTATGCAAGAGTTGCAAACAAGTGAAGTAAGAGAT 589
consensus_6467#2 --------------------------------------------------AGAATCCCCC 10
consensus_6467#1 GAGACTTCANGCTCNCAAGCGCANGCCATTGCAANANTACNCACANGTGCACTAATTCCG 483
* *
consensus_6467#0 AGAGCGAGAGAGAGTTAGGGA--AGAGGCGTGCAATTGTAAATGATAAACGATCGCATTT 647
consensus_6467#2 CGAGNTTAAAGAGAGTAGGGA--AGAGGCGTGCAATTGTAAATGATAAACGATCGCATTT 68
consensus_6467#1 CATACGCCNGCAGGTCNCCCCTTGGAAGTTCACAAGCGCACACGCACTCTAGCGGGCCGT 543
** * *** * * * * * *
consensus_6467#0 TAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTAT 707
consensus_6467#2 TAAGGTGCAAATCATCGCCAAGGGAAGTGAGATGAATCAAGAATCGAGAGCATTACGTAT 128
consensus_6467#1 NAANACACGGGTTGCTCACACCCGGCTTGGGNTACNNTAA----CTTGGCCACAACG--- 596
** * * ** * ** * * ** * * ** ***
consensus_6467#0 GCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGG-TTG 766
consensus_6467#2 GCGTGTGTGTTACGCTTTTGCTCTGGTTAGTTGCTTGAATCTTGGCGCGCTAACGG-TTG 187
consensus_6467#1 ACGCNCTGGGCGCACNACCACAACNGTTGGCAANAGNGCGTTACACACGCCACGGACTTA 656
** * * * * *** * * * *** * * **
consensus_6467#0 CAAT-CGCAATGGTGATACTG----ATCAAGCTCGATGT--GCAAGAATTTATTCCAGAA 819
consensus_6467#2 CAAT-CGCAATGGTGATACTG----ATCAAGCTCGATGT--GCAAGAATTTATTCCAGAA 240
consensus_6467#1 CACTGCACGACAGGGAAGCAACGGAAGCAAGTNTAACGTCGGTGGCAAAACACAGCA-AA 715
** * * * * * ** * * **** * ** * ** * ** **
consensus_6467#0 GCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGTAA-- 877
consensus_6467#2 GCCAAGCTGGTTGCTTAGTATCCTAAGCGTCTACACGGCTACACCATGCGGGACGCTAAC 300
consensus_6467#1 GNGGGGCCCCGTGCTTTGCCACACACA-AACTATNGGCNTATACAA---GCAAAGTTN-- 769
* ** ***** * * * *** * ** ** * * * *
consensus_6467#0 TGAAA-TGGTTCATCTGTGTCCGTGG--AAGGATTCAAATTGA-GTTTTTG-----AAGC 928
consensus_6467#2 TGAAACTGGTTCATCTGTGTCCGNTGGCAAGGATTCAAATTGACGCTTCTNCTCGAACGC 360
consensus_6467#1 -GGAA--GATTAANNAACAANCCGNGCAAATGCCCCGGGCCCACACTTTTCCTGNACAAC 826
* ** * ** * * * ** * * * ** * *
consensus_6467#0 A-TATATTA----TTAGCAA---TCCAAATG-TCATA-----CATGCG-TATTCTTCTCG 973
consensus_6467#2 ACTATANTTAC-TCTAGCAAAT-CCCAAATGGTCATA-----CATGCGCTACTTCCTTCC 413
consensus_6467#1 ACACGGCTGGCCTCTGGCGCGCAACCAANTTACCACAACTAACNCNCGCCACCCCACACN 886
* * * ** **** * ** * * ** * *
consensus_6467#0 TCAAACACCAACATTTGTGAGCTTTTTGAAAAGAACTATTG---CATTTTGTTACGTTGA 1030
consensus_6467#2 TCGN---TCAACACACCAAACACTTCNGCTGAGACTTACCG---NACACACANGAACCTA 467
consensus_6467#1 AGGGN-GGCGGCAACACANGGTCTGCGACAGGCAACTATGGGACCACTAACCCAAACAGC 945
* ** * * ** * *
consensus_6467#0 ACCTGCACTATGGTTGAACTATGTTAGGTTGAACCAATAAAAAAGAATTAAAATTTTT-G 1089
consensus_6467#2 ATTGCCACTCTCACCGTA-TACGCTTGAAACCCCCTGCCCACCCTAACTGGCGCCTCTCG 526
consensus_6467#1 ACACACATTACC-CCGAAAGNAAAAAGGCNACGTTTATAAACCTNGATCA-CATTTAGGN 1003
* ** * * * * * * *
consensus_6467#0 ATTAATGATTTTCTTTTGATTTTGATTAATGTAGTTG----------------------- 1126
consensus_6467#2 AACCCTAACTGCCTTCTCACGGCAGCTNTTGCANAACCCCCAAACTANCCCACAAAGGCA 586
consensus_6467#1 ACCCCGGTATGCATATNGCTTNGGGGTCACACACCGGGCC---ATCATNCTTACATGGCC 1060
* * * * *
consensus_6467#0 ------------------------------------------------------------
consensus_6467#2 CNACNTNTCAANCCACACTCTCCACTCTGGCANCNTCTCCACACCCGGCACCCTNTACCT 646
consensus_6467#1 TCNNTCGGGGGTTCACAACGNCNANTCGA------------------------------- 1089
consensus_6467#0 ---------
consensus_6467#2 CACCCATNC 655
consensus_6467#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||