cluster # 6474

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Anopheles gambiae
cluster # 6474 cluster # 6474 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6474#0 length = 699 sequences # 4

consensus_6474#1 length = 508 sequences # 1

consensusID : consensus_6474#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 699
fasta sequence

                              [CCGCACGAACCGCCGTATGGATCCGCGCGACGGTGTCACGCTGTGTGACGCAACCATTCGAGTTTGAGAAATAGCCCAGAACGGATGAGAGACGTTTGCTGCTGTGCTGGGATTGGCGTGCTGTTTTTTTGTTTGTTTGTTTGCCTCGCAGCACCAAAATTTTGACCCACACCCCGCGCCCGAACTGAACGGACGTGCCTGTCTGTTGGGTGGTTAAAGTGCGTGTGTGTGTGTGTGTGATAAACGTGACCTTTAAAAACCAAGTGCTTCAACATGTGAAGGACATCAACTCCGGTGTGGAGTGTGGAACGATCATGCCGTAGTCAATTCTTACGTTGAAGTGTCCTTCCAGAAGTTGGGTCAAAGTTGAGGACACACAAAAGTTCTTTCTCCCCGTTGGGAGGGCTAACCATCAACGTGATAAGAAGTGTGTGTGTGTGTGTGTGAGGGAGAGAAAAATTAAACACAGTGTCAAATTATCCATCAGGCCCGG-TTCGGCTCCGTTTGCTTAAGCGGTGTTTGTTCACACACCCTCCTTGACTCCACAACCCCCTCGGCTGGAAGGTAAACGGGACAATGTTTATCTTTCTACTGTTTGCCTCGGACGGTTGCCGAAATGTGTGCCAAATATTCTCCCCACGGGTTGGTGGCCCGGCTCCGCAAGCATCGGCGCAAACGGGGAGGATGGCAGCCCTTTCC]

[+] EMBL BM601368             [CCGCACGAACCGCCGTATGGATCCGCGCGACGGTGTCACGCTGTGTGACGCAACCATTCGAGTTTGAGAAATAGCCCAGAACGGATGAGAGACGTTTGCTGCTGTGCTGGGATTGGCGTGCTGTTTTTTTGTTTGTTTGTTTGCCTCGCAGCACCAAAATTTTAACCTACACCCCGCGCCCGAACGGAACAGACGTGCCTGCCTGTTGGGTGGTTAAAGT  GTGTGTGCGTGTGTGTGATAAACGTGACCTTTAAAAAGCAAGTGCTTCAACATGTGAAGGACATCAACTCCGGTGCGGAGTGTGGAACGATCATGCCGTAGTCAATTCTTACGTTGAAGTGTCCTTCCAGAAGTTGGGTCAAAGTTCAGGACACACAAAAGTTCTTTCTCCCCGTTGGGAGGGCAAACCATCAACGTGATAAGAA    GTGTGTGTGTGTGTGAGGGAGAGAAAAATTAAACACAGTGTCAAATTATCCATCAGGCCCGGTTTTGCCTGCGTTTGCTTAAGCGGTGTTTGTTCACACACCCTTCTTGACTCCACTCCCCCCTCGGCTGGAAGGTAAACGGGACAATGTTTATCTTTCTACTGTTTGCCTCGGACGGTTGCCGAAATGTGTGCCAAATATTCTCCCCACGGGTTGGTGGCCCGGCTCCGCAAGCATCGGCGCAAACGGGGAGGATGGCAGCCCTTTCC]
[+] EMBL BM597222             [                                                                                       ccggtCGTTTGCTGCTGTGCTGGGATTGGCGTGCTGTTTTTTTG TTGTTTGTTTGCCTCGCAGCACCAAAATTTTGACCCACACCCCGCGCCCGAACTGAACGGACGTGCCTGTCTGTTGGGTGGTTAAAGTGCGTGTGTGTGTGTGTGTGATAAACGTGACCTTTAAAAACCAAGTGCTTCAACATGTGAAGGACATCAACTCCGGTGTGGAGTGTGGAACGATCATGCCGTAGTCAATTCTTACGTTGAAGTGTCCTTCCAGAAGTTGGGTCAAAGTTGAGGACACACAAAAGTTCTTTCTCCCCGTTGGGAGGGCTAACCATCAACGTGATAAGAAGTGTGTGTGTGTGTGTGTGAGGGAGAGAAAAATTAAACACAGTGTCAAATTATCCAT                                                                                                                                                                                                                        ]
[+] EMBL BX622753             [                                                                                                                                               CCTCGCAGCACCAAAATTTTGACCCACACCCCGCGCCCGAACTGAACGGACGTGCCTGTCTGTTGGGTGGTTAAAGTGCGTGTGTGTGTGTGTGTGATAAACGTGACCTTTAAAAACCAAGTGCTTCAACATGTGAAGGACATCAACTCCGGTGTGGAGTGTGGAACGATCATGCCGTAGTCAATTCTTACGTTGAAGTGTCCTTCCAGAAGTTGGGTCAAAGTTGAGGACACACAAAAGTTCTTTCTCCCCGTTGGGAGGGCTAACCATCAACGTGATAAGAAGTGTGTGTGTGTGTGTGTGAGGGAGAGAAAAATTAAACACAGTGTCAAATTATCCATCAGGCCCGG TTCGGCTCCGTTTGCTTAAGCGGTGTTTGTTCACACACCCTCCTTGACTCCACAA                                                                                                                                                       ]
[+] EMBL BX614560             [                                                                                                                                                                                                                                                                                                                                                                              tcGAGGACACACAAAAGTTCTTTCTCCCCGTTGGGAGGGCTAACCATCAACGTGATAAGAAGTGTGTGTGTGTGTGTGTGAGGGAGAGAAAAATTAAACACAGTGTCAAATTATCCATCACGCCCGG TTCGGCTCCGTTTGCTTAAGCGGTGTTTGTTCACACACCCTCCTTGACTCCACAA                                                                                                                                                       ]




>consensus_6474#0
CCGCACGAACCGCCGTATGGATCCGCGCGACGGTGTCACGCTGTGTGACGCAACCATTCG
AGTTTGAGAAATAGCCCAGAACGGATGAGAGACGTTTGCTGCTGTGCTGGGATTGGCGTG
CTGTTTTTTTGTTTGTTTGTTTGCCTCGCAGCACCAAAATTTTGACCCACACCCCGCGCC
CGAACTGAACGGACGTGCCTGTCTGTTGGGTGGTTAAAGTGCGTGTGTGTGTGTGTGTGA
TAAACGTGACCTTTAAAAACCAAGTGCTTCAACATGTGAAGGACATCAACTCCGGTGTGG
AGTGTGGAACGATCATGCCGTAGTCAATTCTTACGTTGAAGTGTCCTTCCAGAAGTTGGG
TCAAAGTTGAGGACACACAAAAGTTCTTTCTCCCCGTTGGGAGGGCTAACCATCAACGTG
ATAAGAAGTGTGTGTGTGTGTGTGTGAGGGAGAGAAAAATTAAACACAGTGTCAAATTAT
CCATCAGGCCCGGTTCGGCTCCGTTTGCTTAAGCGGTGTTTGTTCACACACCCTCCTTGA
CTCCACAACCCCCTCGGCTGGAAGGTAAACGGGACAATGTTTATCTTTCTACTGTTTGCC
TCGGACGGTTGCCGAAATGTGTGCCAAATATTCTCCCCACGGGTTGGTGGCCCGGCTCCG
CAAGCATCGGCGCAAACGGGGAGGATGGCAGCCCTTTCC

consensusID : consensus_6474#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [AAGAGGCAAGCGGATGCTCAGCAGAATCGCCACGAGGTTAANTAAGCCCAGAACGGATGAGAGTCGCTTTGCTGCTGTGCTGGGATTGGCGTGCTGTGTCTTCTGTCNGTTTGTTTGCCTCGGCAGCACCAAAAGTTTTAGACCCACACCCCGCGCCCGAACTGAACGGACGTGCCATGATCATGTTGGGTGGTCTAAAGTGCGCTGTGATGTGTGTGTGTGATAAACGTGACCAGTATTAACGAAGCCGAAGGTGCTTCAACCAGTGTGCAAGGACAGTCCAAACTGTCACCGGATGNTGGGACGCTGTGGGCAGNACNGAAAGTCNATTGCCCGGATGAAGGGCAAAGGTGTCAGATTTAGCAGGTTGGAAACAGTGGGTTCGCCGTTTCCCGAGCACAGGNTTGTGGGGGGTACAAAAGAAGGGTCGTTGGAACGGGAAACGAACANCANGAGAGACGGTTGTCTGGTTTCGATCCCGCCCCGGGTGTATGGGGGAAGGGGGCGC]

[+] EMBL BX466538             [AAGAGGCAAGCGGATGCTCAGCAGAATCGCCACGAGGTTAANTAAGCCCAGAACGGATGAGAGTCGCTTTGCTGCTGTGCTGGGATTGGCGTGCTGTGTCTTCTGTCNGTTTGTTTGCCTCGGCAGCACCAAAAGTTTTAGACCCACACCCCGCGCCCGAACTGAACGGACGTGCCATGATCATGTTGGGTGGTCTAAAGTGCGCTGTGATGTGTGTGTGTGATAAACGTGACCAGTATTAACGAAGCCGAAGGTGCTTCAACCAGTGTGCAAGGACAGTCCAAACTGTCACCGGATGNTGGGACGCTGTGGGCAGNACNGAAAGTCNATTGCCCGGATGAAGGGCAAAGGTGTCAGATTTAGCAGGTTGGAAACAGTGGGTTCGCCGTTTCCCGAGCACAGGNTTGTGGGGGGTACAAAAGAAGGGTCGTTGGAACGGGAAACGAACANCANGAGAGACGGTTGTCTGGTTTCGATCCCGCCCCGGGTGTATGGGGGAAGGGGGCGC]




>consensus_6474#1
AAGAGGCAAGCGGATGCTCAGCAGAATCGCCACGAGGTTAANTAAGCCCAGAACGGATGA
GAGTCGCTTTGCTGCTGTGCTGGGATTGGCGTGCTGTGTCTTCTGTCNGTTTGTTTGCCT
CGGCAGCACCAAAAGTTTTAGACCCACACCCCGCGCCCGAACTGAACGGACGTGCCATGA
TCATGTTGGGTGGTCTAAAGTGCGCTGTGATGTGTGTGTGTGATAAACGTGACCAGTATT
AACGAAGCCGAAGGTGCTTCAACCAGTGTGCAAGGACAGTCCAAACTGTCACCGGATGNT
GGGACGCTGTGGGCAGNACNGAAAGTCNATTGCCCGGATGAAGGGCAAAGGTGTCAGATT
TAGCAGGTTGGAAACAGTGGGTTCGCCGTTTCCCGAGCACAGGNTTGTGGGGGGTACAAA
AGAAGGGTCGTTGGAACGGGAAACGAACANCANGAGAGACGGTTGTCTGGTTTCGATCCC
GCCCCGGGTGTATGGGGGAAGGGGGCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6474#0      CCGCACGAACCGCCGTATGGATCCGCGCGACGGTGTCACGCTGTGTGACGCAACCATTCG 60
consensus_6474#1      ------------------------AAGAGGCAAGCGGATGCTCAGCAGAATCGCCA--CG 34
                                                * * *      * ***  *        ***  **

consensus_6474#0      AGTTTGAGAAATAGCCCAGAACGGATGAGAGACG-TTTGCTGCTGTGCTGGGATTGGCGT 119
consensus_6474#1      AGGTTAANTAA--GCCCAGAACGGATGAGAGTCGCTTTGCTGCTGTGCTGGGATTGGCGT 92
                      ** ** *  **  ****************** ** *************************

consensus_6474#0      GCTGT-TTTTTTGTTTGTTTGTTTGCCTCG-CAGCACCAAAATTTT--GACCCACACCCC 175
consensus_6474#1      GCTGTGTCTTCTGTCNGTTTGTTTGCCTCGGCAGCACCAAAAGTTTTAGACCCACACCCC 152
                      ***** * ** ***  ************** *********** ***  ************

consensus_6474#0      GCGCCCGAACTGAACGGACGTGCCT--GTC-TGTTGGGTGGT-TAAAGTGCG-TGTG-TG 229
consensus_6474#1      GCGCCCGAACTGAACGGACGTGCCATGATCATGTTGGGTGGTCTAAAGTGCGCTGTGATG 212
                      ************************    ** *********** ********* **** **

consensus_6474#0      TGTGTGTGTGATAAACGTGACCTTTAAAAACCAAG-------TGCTTCAACATGTGAAGG 282
consensus_6474#1      TGTGTGTGTGATAAACGTGACCAGTATTAACGAAGCCGAAGGTGCTTCAACCAGTGTGCA 272
                      **********************  **  *** ***       *********  ***    

consensus_6474#0      ACATCAACTCCGGTGTGGAGTGTGGAACGATCATGCCGTAGTCAATTCTTACGTTGAAGT 342
consensus_6474#1      AGGACAG-TCCAAACTGTCACCGGATGNTGGGACGCTGTGGGCAGNACNGAAAGTCNATT 331
                      *   **  ***    **      *        * ** ** * **   *  *   *  * *

consensus_6474#0      GTCCTTCCAGAAGTTGGGTCAAAGTTGAGGACACACAAAAGTTCTTTCTCCCCGTTGGGA 402
consensus_6474#1      GCC----CGGATGAAGGGCAAAGGTGTCAGATTTA-GCAGGTTGGAAACAGTGGGTTCGC 386
                      * *    * ** *  ***  ** **    **   *   * ***          * *  * 

consensus_6474#0      GGGCTAACCATCAACGTGATAAGAAGTGTGTGTGTGTGTGTGTGAGGGAGAGAAAAATTA 462
consensus_6474#1      CGTTTCCCGAGCACAGGNTTGTGGGGGGTACAAAAGAAGGGTCGTTGGAACGGGAAAC-G 445
                       *  *  * * **  *   *  *  * **      *   *   *  ***  *  ***   

consensus_6474#0      AACACAGTGTCAAATTATCCATCAGGCCCGGTTCGGCTCCGTTTGCTTAAGCGGTGTTTG 522
consensus_6474#1      AACANCANGAGAGACGGTTGTCTGGTTTCGATCCCGCCCCGGGTGTATGGGGGAAGGGGG 505
                      ****    *  * *   *      *   ** * * ** ***  **  *  * *  *   *

consensus_6474#0      TTCACACACCCTCCTTGACTCCACAACCCCCTCGGCTGGAAGGTAAACGGGACAATGTTT 582
consensus_6474#1      CGC--------------------------------------------------------- 508
                        *                                                         

consensus_6474#0      ATCTTTCTACTGTTTGCCTCGGACGGTTGCCGAAATGTGTGCCAAATATTCTCCCCACGG 642
consensus_6474#1      ------------------------------------------------------------
                                                                                  

consensus_6474#0      GTTGGTGGCCCGGCTCCGCAAGCATCGGCGCAAACGGGGAGGATGGCAGCCCTTTCC 699
consensus_6474#1      ---------------------------------------------------------