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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6487#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 945 fasta sequence
[AGATCCCCGAGGTTAATTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGGTAACTAATGGCAACCAGCGACGTAAACCCGGTCGCCCAGCGGTTAGCGGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAGATGGAGATGGGATCGGTTGTTTGTTCAGTCTTCATCACTGTCCAACGATGCTTAGGATGGGAGACATAACGAACACGGGCACTCAGGTGGAAGGGTAGGGTGAAACACTCATCTAATGCTGGCACAATGTTTACTCACACTTTCATTGTCTGTGTTACTTACCACACATCCGTGTATCATATCAGGCACCATAACAACTACTTTAAACAAAAACATTGGCATTGGTTTGCNAATCNANACCAAACGTATTTTACACCACTTTACATGNTCCCAATTCNCTTTTANTTCACGGAACCAAATTTAATTTACCCAAAAAAAAACCCCNTTTTCCNCCTTTACAAACCTATTTTCGCGACCNTNAAGTGATTATACCAGACCNCGTGGAGNAGGGTCNCGGATTCTCATAACAGCGACGAGACATGGTAGTACACACAAGGGTACTACAAAACGCGAAGCCCCAAAATATNATCACGNGGGGCCATAATATTAGTGAATATCCCAAAAAACNCTTAAATCTTTACCCGANGGGACAGAGAGAGAACCCCCNGCGTTTNGCCGCCCCGGAGTCATCAACCACACAANGGGTGATCACAAGTGGAACAATTACACGAGCGNCAAAACGGCGTGAGTCTCCCGANCTCNCTTGGGGACANCACAAACGCGCAGNGNGAATCCTTNAACTTTGGGAATTGGCCTATCCTTNAAACGTACACTTACAC]
[+] EMBL AL695081 [AGATCCCCGAGGTTAATTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGGTAACTAATGGCAACCAGCGACGTAAACCCGGTCGCCCAGCGGTTAGCGGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAGATGGAGATGGGATCGGTTGTTTGTTCAGTCTTCATCACTGTCCAACGATGCTTAGGATGGGAGACATAACGAACACGGGCACTCAGGTGGAAGGGTAGGGTGAAACACTCATCTAATGCTGGCACAATGTTTACTCACACTTTCATTGTCTGTGTTACTTACCACACATCCGTGTATCATATCAGGCACCATAACAACTACTTTAAACAAAAACATTGGCATTGGTTTGCNAATCNANACCAAACGTATTTTACACCACTTTACATGNTCCCAATTCNCTTTTANTTCACGGAACCAAATTTAATTTACCCAAAAAAAAACCCCNTTTTCCNCCTTTACAAACCTATTTTCGCGACCNTNAAGTGATTATACCAGACCNCGTGGAGNAGGGTCNCGGATTCTCATAACAGCGACGAGACATGGTAGTACACACAAGGGTACTACAAAACGCGAAGCCCCAAAATATNATCACGNGGGGCCATAATATTAGTGAATATCCCAAAAAACNCTTAAATCTTTACCCGANGGGACAGAGAGAGAACCCCCNGCGTTTNGCCGCCCCGGAGTCATCAACCACACAANGGGTGATCACAAGTGGAACAATTACACGAGCGNCAAAACGGCGTGAGTCTCCCGANCTCNCTTGGGGACANCACAAACGCGCAGNGNGAATCCTTNAACTTTGGGAATTGGCCTATCCTTNAAACGTACACTTACAC]
consensusID : consensus_6487#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 751 fasta sequence
[CCCAGCAGCTAGCGGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAGATGGAGATGGGATCGGTTTTCTTGTTCAGTCTTCATCACTGTCCAACGATGCTTAGGATGGGATACATAACGAACACAGGCACTCAGGTGGAAGGGTAGGGTGAAACACTCATCTAATGTTGCCACAATGTTTACTCACACTTTCATTGTCTGTGTTACTTACCACACATCCGTGTATCATATCAGGCACCCATAACAACTACTATAAACAAAAACATTGGATTGGTTTGAAATCAAAACAAACTATTTTACACACTTTACATGCTCGAATTCATTTTATTTCACGAACAACTTTATTACAAACAAACCCTTTTTCACTTACAACATATCACGCACCTTAGGTATCAGTACTGTGAGGTTCGCTTCATAACGCAGCAGTGATCAACGATCAACCAGCCAAATACTTCTGGTTCTATATATGTATCCCAAACCTTACTTTCGTTTGCAGCGATCGCGTTCGCCGTAAAAAAGGGTCAGTGAGATCAGCGATCGCTGCTCGAGCTCTGGAACAAGCAGCGATCTACTTGAATGCCTATCTTTAAGTACATAACTATTTAATGTAGACACGTTTTGCTTAAGGACGCAAAACGCAGAAATGGTATTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCTTGGTGGAAATGATATTTTGTGCAGAAAAATTATGAA]
[+] EMBL BX626470 [CCCAGCAGCTAGCGGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAGATGGAGATGGGATCGGTTTTCTTGTTCAGTCTTCATCACTGTCCAACGATGCTTAGGATGGGATACATAACGAACACAGGCACTCAGGTGGAAGGGTAGGGTGAAACACTCATCTAATGTTGCCACAATGTTTACTCACACTTTCATTGTCTGTGTTACTTACCACACATCCGTGTATCATATCAGGCACCCATAACAACTACTATAAACAAAAACATTGGATTGGTTTGAAATCAAAACAAACTATTTTACACACTTTACATGCTCGAATTCATTTTATTTCACGAACAACTTTATTACAAACAAACCCTTTTTCACTTACAACATATCACGCACCTTAGGTATCAGTACTGTGAGGTTCGCTTCATAACGCAGCAGTGATCAACGATCAACCAGCCAAATACTTCTGGTTCTATATATGTATCCCAAACCTTACTTTCGTTTGCAGCGATCGCGTTCGCCGTAAAAAAGGGTCAGTGAGATCAGCGATCGCTGCTCGAGCTCTGGAACAAGCAGCGATCTACTTGAATGCCTATCTTTAAGTACATAACTATTTAATGTAGACACGTTTTGCTTAAGGACGCAAAACGCAGAAATGGTATTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCTTGGTGGAAATGATATTTTGTGCAGAAAAATTATGAA]
consensusID : consensus_6487#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 725 fasta sequence
[CCGACGATGTCAGCTCGGACAACATCGTGATCGTCGATGCGCAAACGCTGCTCGTACCCAACTTCAGCTACGATGGCGAAGCACCAGATGCCAAGTTTTGGGTGGGACGCGGGCCAGCACCGACATCGCAGGGTATTCGCATCCCAGACGAGAATGGCAAGGAGACACCGCTGCGTCGCTACGACAAGAAGACGATCGTTCTGACCCTGCCCGGTGATCTGACCGTGTTCGACATTGGTCACTTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGCGATCGCGTTCGCCGTAAAAAAGGGTCAGTGAGATCAGCGATCGCTGCTCGAGCTCTGGAACAAGCAGCGATCTACTTGAATGCCTATCTTTAAGTACATAACTATTTAATGTAGACACGTTTTGCTTAAGGACGCAAAACGCAGAAATGGTATTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCATGGTGGAAATGATATTTTGTGCAGAAAAATTATGAAAATTTTAAATTATCTCATTAATCTCGCATTGCAAAACAAAGCCAAATTTGTACTATTGTTCGAGAGCTACGAAATTGAAGAACATTTGAGAAGAGTCCCGTGACATCCTTTTAGGTTGTAAATAAAAATTCCACTACAAAAATGT]
[+] EMBL BM635516 [CCGACGATGTCAGCTCGGACAACATCGTGATCGTCGATGCGCAAACGCTGCTCGTACCCAACTTCAGCTACGATGGCGAAGCACCAGATGCCAAGTTTTGGGTGGGACGCGGGCCAGCACCGACATCGCAGGGTATTCGCATCCCAGACGAGAATGGCAAGGAGACACCGCTGCGTCGCTACGACAAGAAGACGATCGTTCTGACCCTGCCCGGTGATCTGACCGTGTTCGACATTGGTCACTTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGCGATCGCGTTCGCCGTAAAAAAGGGTCAGTGAGATCAGCGATCGCTGCTCGAGCTCTGGAACAAGCAGCGATCTACTTGAATGCCTATCTTTAAGTACATAACTATTTAATGTAGACACGTTTTGCTTAAGGACGCAAAACGCAGAAATGGTATTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCATGGTGGAAATGATATTTTGTGCAGAAAAATTATGAAAATTTTAAATTATCTCATTAATCTCGCATTGCAAAACAAAGC ]
[+] EMBL BM593572 [ ccgCTTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGCGATCGCGTTCGCCGTAAAAAAGGGTCAGTGAGATCAGCGATCGCTGCTCGAGCTCTGGAACAAGCAGCGATCTACTCGAATGCCTATCTTTAAGTACATAACTATTTAATGTAGACACGTTTTGCTTAAGGACGCAAAACGCAGAAATGGTATTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCTTGGTGGAAATGATATTTTGTGCAGAAAAATTATGAAAATTTTAAATTATCTCATTAATCTCGCATTGCAAAAAAAAAACAAATTTGTACTATTGTTCGAGAGCTACGAAATTGAAGAACATTTGAGAAGAGTCCCGTGACATCCTTTTAGGTTGTAAATAAAAATTCCACTACAAAAATGT]
consensusID : consensus_6487#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[TGCTCGAGCAGATCGCCAGAGGNNTNATTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGGTAACTAATGGCAACCAGCGACGTAAACCCGGTCGCCCAGCGGTTAGCGGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAATGGAGATGGGATCGGTTGTTTGTTCAGTCTTCATCACTGTCCAACGATGCTTAGGATGGGAGACATAACGAACACGGGCACTCAGGTGGAAGGGTANNGGTGAAACACTCATCTAATGCTGCCACAATGTTTACTCACACTTTCATTCGTCTGTGTTACTTACCACACATCCGTGTATCATATCAGGCACCCATAACAAACTACTTTACAAGCAACAACACCATTGGGANTTGGCTTTGACATTCAAAAACCAAAAGCTATTTATACCACNACTTTACACATTGCTCGAAATTCATTCTNCAACTTTCAACGAAACCAACCTTTTTATTACAAAACAAAACCACTTTAATCACCATTAACAA]
[+] EMBL AL696578 [TGCTCGAGCAGATCGCCAGAGGNNTNATTTGGTGTGTGGTGCGAGGCATTCACTGTCGACTTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGCATCAGCCCACAGGTAACTAATGGCAACCAGCGACGTAAACCCGGTCGCCCAGCGGTTAGCGGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAATGGAGATGGGATCGGTTGTTTGTTCAGTCTTCATCACTGTCCAACGATGCTTAGGATGGGAGACATAACGAACACGGGCACTCAGGTGGAAGGGTANNGGTGAAACACTCATCTAATGCTGCCACAATGTTTACTCACACTTTCATTCGTCTGTGTTACTTACCACACATCCGTGTATCATATCAGGCACCCATAACAAACTACTTTACAAGCAACAACACCATTGGGANTTGGCTTTGACATTCAAAAACCAAAAGCTATTTATACCACNACTTTACACATTGCTCGAAATTCATTCTNCAACTTTCAACGAAACCAACCTTTTTATTACAAAACAAAACCACTTTAATCACCATTAACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6487#0 ---------AGATCCCCGA--GGTTAATTTGGTGTGTGGTGCGAGGCATTCACTGTCGAC 49
consensus_6487#3 TGCTCGAGCAGATCGCCAGAGGNNTNATTTGGTGTGTGGTGCGAGGCATTCACTGTCGAC 60
consensus_6487#1 ------------------------------------------------------------
consensus_6487#2 ------------------------------------------------------------
consensus_6487#0 TTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGC 109
consensus_6487#3 TTTGGGCACGTGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTGGC 120
consensus_6487#1 ------------------------------------------------------------
consensus_6487#2 --------------CCGACGATGTCAGCTCGG-ACAACATCGTGATCGTCGATGCGCAAA 45
consensus_6487#0 ATCAGCCCACAGGTAACTAATGGCAACCAGCGACGTAAACCCGGTCGCCCAGCGGTTAGC 169
consensus_6487#3 ATCAGCCCACAGGTAACTAATGGCAACCAGCGACGTAAACCCGGTCGCCCAGCGGTTAGC 180
consensus_6487#1 -----------------------------------------------CCCAGCAGCTAGC 13
consensus_6487#2 CGCTGCTCGTACCCAACTTCAGCTA--CGATGGCGAAGCACCAGATGCCAAGTTTTGGGT 103
** ** *
consensus_6487#0 GGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAGATG 229
consensus_6487#3 GGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTA-ATG 239
consensus_6487#1 GGAAGCTCCGGCAGCTCTGGTGGGCTGCTGGACTACGTTGGCTCACTGCTGTTCTAGATG 73
consensus_6487#2 GGGACGCGGGCCAGCACCGACA--TCGCAGG-----GTATTCGCATCCCAGACGAGAATG 156
** * * **** * * ** ** ** * ** * * ***
consensus_6487#0 GAGATGGGAT-CGGTTGT-TTGTTCAGTCTTCATCACTGTC----CAACGATGCTTAGGA 283
consensus_6487#3 GAGATGGGAT-CGGTTGT-TTGTTCAGTCTTCATCACTGTC----CAACGATGCTTAGGA 293
consensus_6487#1 GAGATGGGAT-CGGTTTTCTTGTTCAGTCTTCATCACTGTC----CAACGATGCTTAGGA 128
consensus_6487#2 GCAAGGAGACACCGCTGCGTCGCTACGACAAGAAGACGATCGTTCTGACCCTGCCCGGTG 216
* * * ** * * * * * * * * * ** ** ** *** *
consensus_6487#0 TGGGAGACATAACGAACACGGG-CACTCAGGTGGAAGGGTAGGG-TGAAACACTCATCTA 341
consensus_6487#3 TGGGAGACATAACGAACACGGG-CACTCAGGTGGAAGGGTANNGGTGAAACACTCATCTA 352
consensus_6487#1 TGGGATACATAACGAACACAGG-CACTCAGGTGGAAGGGTAGGG-TGAAACACTCATCTA 186
consensus_6487#2 ATCTGACCGTGTTCGACATTGGTCACTTTGGTGTGTGGTGCGAG--GCATTCACTGTCGA 274
* * *** ** **** **** ** * * * ** *
consensus_6487#0 ATGCTGGCACAATGTTTACTCACACTTTCATT-GTCTGTGTTACTTACCACACATCCGTG 400
consensus_6487#3 ATGCTGCCACAATGTTTACTCACACTTTCATTCGTCTGTGTTACTTACCACACATCCGTG 412
consensus_6487#1 ATGTTGCCACAATGTTTACTCACACTTTCATT-GTCTGTGTTACTTACCACACATCCGTG 245
consensus_6487#2 CTTTGGGCACG-TGCGCATCCCGGACCAGATCAATGTGCCACCGTCGCTGAAGATGCTTG 333
* * *** ** * * ** * ** * * * ** * **
consensus_6487#0 -TATCATATCAGGCACC-ATAACAA-CTACTTTA-----AACAAAAACATTGGCATTGG- 451
consensus_6487#3 -TATCATATCAGGCACCCATAACAAACTACTTTACAAGCAACAACACCATTGGGANTTGG 471
consensus_6487#1 -TATCATATCAGGCACCCATAACAA-CTACTATA-----AACAAAAACATTGG-ATTGG- 296
consensus_6487#2 GCATCAGCCCA--CAGCGATCGCGT-TCGCCGTAA----AAAAGGGTCAGTGAGATCAGC 386
**** ** ** * ** * * ** ** * ** ** * *
consensus_6487#0 -TTTGCNAATCNANA-CCAAACGTATTTTA---CACCACTTTACA---TGNTCCCAATTC 503
consensus_6487#3 CTTTGACATTCAAAAACCAAAAGCTATTTATACCACNACTTTACACATTGCTCGAAATTC 531
consensus_6487#1 -TTTG-AAATCAAAA--CAAAC-TATTTTA---CAC-ACTTTACA---TGCTCG-AATTC 343
consensus_6487#2 GATCGCTGCTCGAGCTCTGGAA-CAAGCAGCGATCTACTTGAATGCCTATCTTTAAGTAC 445
* * ** * * * * * * * *
consensus_6487#0 NCTTTTAN---TTCACGGAACCAAATTTAATTTACCCAAAAAAAAACCCCNTTTTCCNCC 560
consensus_6487#3 ATTCTNCAACTTTCAACGAAACCAACCTTTTTATTACAAAACAAAACCACTTTAATCACC 591
consensus_6487#1 ATTTTAT----TTCACGAA---CAACTTTATT-----ACAAACAAACCCTTTT--TCACT 389
consensus_6487#2 ATAACTAT---TTAATGTAGACACGTTTTGCTTA---AGGACGCAAAACGCAGAAATGGT 499
** * * * * * * **
consensus_6487#0 TTTACAAACCTATTTTCGCGACCNTNAAGTGATTATACCAGACCNCGTGGAGNAGGGTCN 620
consensus_6487#3 ATTAACAA---------------------------------------------------- 599
consensus_6487#1 TACAACATATCACGCACCTTAGGTATCAGTACTGTGA--GGTTCGCTTCATAACGCAGCA 447
consensus_6487#2 ATTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCATGGTGGAAATGATAT 559
*
consensus_6487#0 CGGATTCTCATAACAGCGACGAGACATGGTAGTACACACAAGG---GTACTACAAAACGC 677
consensus_6487#3 ------------------------------------------------------------
consensus_6487#1 GTGATCAACGATCAACCAGCCAAATACTTCTGGTTCTATATAT---GTATCCCAAACCTT 504
consensus_6487#2 TTTGTGCAGAAAAATTATGAAAATTTTAAATTATCTCATTAATCTCGCATTGCAAAACAA 619
consensus_6487#0 GAAGCCCCAAAATATNATCACGNGGGGCCATAATATTAGTGAATATCCCAAAAAACNCTT 737
consensus_6487#3 ------------------------------------------------------------
consensus_6487#1 ACTTTCGTTTGCAGCGATCGCGTTCGCCGTAAAAAAGGGTCAGTG----AGATCAGCGAT 560
consensus_6487#2 AGCCAAATTTGTACTATTGTTCGAGAGCTACGAAATTGAAGAACATTTGAGAAGAGTCCC 679
consensus_6487#0 AAATCTTTACCCGANGGGACAGAGAGAGAACCCCCNGCGTTTNGCCGCCCCGGAGTCATC 797
consensus_6487#3 ------------------------------------------------------------
consensus_6487#1 CGCTGCTCGAGCTCTGGAACAAGCAGCGATCTACTTGAAT--GCCTATCTTTAAGTACAT 618
consensus_6487#2 GTGACATCCTTTTAGGTTGTAAATAAAAATTCCACTACAAAAATGT-------------- 725
consensus_6487#0 AACCACACAANGGGTGATCACAAGTGGAACAATTACACGAGCGNCAAAACGGCGTGAGTC 857
consensus_6487#3 ------------------------------------------------------------
consensus_6487#1 AACTATTTAATG--TAGACACGTTTTGCTTAAGGACGCAAAACGCAGAAATG-----GTA 671
consensus_6487#2 ------------------------------------------------------------
consensus_6487#0 TCCCGANCTCNCTTGGGGACANCACAAACGCGCAGNGNGAATCCTTNAACTTTGGGAATT 917
consensus_6487#3 ------------------------------------------------------------
consensus_6487#1 TTGTTAGTGTTACTGTACTTTCCGTAAACACGTGTGGGAGATCTTGG-----TGGAAATG 726
consensus_6487#2 ------------------------------------------------------------
consensus_6487#0 GGCCTATCCTTNAAACGTACACTTACAC 945
consensus_6487#3 ----------------------------
consensus_6487#1 ATATTTTGTGCAGAAAAATTATGAA--- 751
consensus_6487#2 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||